Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
14:30:05 (35965): wrapper (7.7.26015): starting
14:30:05 (35965): wrapper: running run_atlas (--nthreads 12)
[2024-06-12 14:30:05] Arguments: --nthreads 12
[2024-06-12 14:30:05] Threads: 12
[2024-06-12 14:30:05] Checking for CVMFS
[2024-06-12 14:30:06] Probing /cvmfs/atlas.cern.ch... OK
[2024-06-12 14:30:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-06-12 14:30:06] Running cvmfs_config stat atlas.cern.ch
[2024-06-12 14:30:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-06-12 14:30:06] 2.11.3.0 144541 221457 159280 133804 3 200 41728727 45568000 12736 130560 0 345229072 99.775 213657586 18948 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2024-06-12 14:30:06] CVMFS is ok
[2024-06-12 14:30:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-12 14:30:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-12 14:30:06] Further information can be found at the LHC@home message board.
[2024-06-12 14:30:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-12 14:30:06] Checking for apptainer binary...
[2024-06-12 14:30:06] Using apptainer found in PATH at /usr/bin/apptainer
[2024-06-12 14:30:06] Running /usr/bin/apptainer --version
[2024-06-12 14:30:06] apptainer version 1.1.8-1.el7
[2024-06-12 14:30:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-12 14:30:07] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0048.triumf.lcg
[2024-06-12 14:30:07] apptainer works
[2024-06-12 14:30:07] Set ATHENA_PROC_NUMBER=12
[2024-06-12 14:30:07] Set ATHENA_CORE_NUMBER=12
[2024-06-12 14:30:07] Starting ATLAS job with PandaID=6227563896
[2024-06-12 14:30:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-12 19:37:18]  *** The last 200 lines of the pilot log: ***
[2024-06-12 19:37:18] 2024-06-13 02:36:57,834 | INFO     | intersect: -31288026463.69734
[2024-06-12 19:37:18] 2024-06-13 02:36:57,834 | INFO     | chi2: 5.762514681455098
[2024-06-12 19:37:18] 2024-06-13 02:36:57,834 | INFO     | model: linear, x: [1718227843.0, 1718227904.0, 1718227965.0, 1718228026.0, 1718228087.0, 1718228148.0, 1718228209.0, 1718228270.0, 1718228331.0, 1718228392.0, 1718
[2024-06-12 19:37:18] 2024-06-13 02:36:57,834 | INFO     | sum of square deviations: 8123287828.693616
[2024-06-12 19:37:18] 2024-06-13 02:36:57,835 | INFO     | sum of deviations: 174707441372.182
[2024-06-12 19:37:18] 2024-06-13 02:36:57,835 | INFO     | mean x: 1718236871.5723906
[2024-06-12 19:37:18] 2024-06-13 02:36:57,836 | INFO     | mean y: 2695336.3636363638
[2024-06-12 19:37:18] 2024-06-13 02:36:57,836 | INFO     | -- intersect: -36951401801.91677
[2024-06-12 19:37:18] 2024-06-13 02:36:57,836 | INFO     | intersect: -36951401801.91677
[2024-06-12 19:37:18] 2024-06-13 02:36:57,836 | INFO     | chi2: 5.001348592276386
[2024-06-12 19:37:18] 2024-06-13 02:36:57,836 | INFO     | current chi2=5.001348592276386 (change=13.208922341287796 %)
[2024-06-12 19:37:18] 2024-06-13 02:36:57,836 | INFO     | right removable region: 296
[2024-06-12 19:37:18] 2024-06-13 02:36:57,836 | INFO     | model: linear, x: [1718228148.0, 1718228209.0, 1718228270.0, 1718228331.0, 1718228392.0, 1718228453.0, 1718228514.0, 1718228575.0, 1718228636.0, 1718228697.0, 1718
[2024-06-12 19:37:18] 2024-06-13 02:36:57,836 | INFO     | sum of square deviations: 8123184128.693616
[2024-06-12 19:37:18] 2024-06-13 02:36:57,838 | INFO     | sum of deviations: 70249094763.48482
[2024-06-12 19:37:18] 2024-06-13 02:36:57,838 | INFO     | mean x: 1718237176.5723906
[2024-06-12 19:37:18] 2024-06-13 02:36:57,838 | INFO     | mean y: 2719554.303030303
[2024-06-12 19:37:18] 2024-06-13 02:36:57,838 | INFO     | -- intersect: -14856552909.657278
[2024-06-12 19:37:18] 2024-06-13 02:36:57,838 | INFO     | intersect: -14856552909.657278
[2024-06-12 19:37:18] 2024-06-13 02:36:57,838 | INFO     | chi2: 3.1020743783760496
[2024-06-12 19:37:18] 2024-06-13 02:36:57,838 | INFO     | current chi2=3.1020743783760496 (change=46.168043816718885 %)
[2024-06-12 19:37:18] 2024-06-13 02:36:57,838 | INFO     | model: linear, x: [1718228453.0, 1718228514.0, 1718228575.0, 1718228636.0, 1718228697.0, 1718228758.0, 1718228819.0, 1718228880.0, 1718228941.0, 1718229002.0, 1718
[2024-06-12 19:37:18] 2024-06-13 02:36:57,838 | INFO     | sum of square deviations: 7719720062.027386
[2024-06-12 19:37:18] 2024-06-13 02:36:57,840 | INFO     | sum of deviations: 3917659476.164383
[2024-06-12 19:37:18] 2024-06-13 02:36:57,840 | INFO     | mean x: 1718237329.0821917
[2024-06-12 19:37:18] 2024-06-13 02:36:57,840 | INFO     | mean y: 2744629.243150685
[2024-06-12 19:37:18] 2024-06-13 02:36:57,840 | INFO     | -- intersect: -869238901.3112435
[2024-06-12 19:37:18] 2024-06-13 02:36:57,840 | INFO     | intersect: -869238901.3112435
[2024-06-12 19:37:18] 2024-06-13 02:36:57,840 | INFO     | chi2: 1.6021669756846117
[2024-06-12 19:37:18] 2024-06-13 02:36:57,840 | INFO     | current chi2=1.6021669756846117 (change=48.35175497876509 %)
[2024-06-12 19:37:18] 2024-06-13 02:36:57,840 | INFO     | model: linear, x: [1718228758.0, 1718228819.0, 1718228880.0, 1718228941.0, 1718229002.0, 1718229063.0, 1718229126.0, 1718229185.0, 1718229246.0, 1718229307.0, 1718
[2024-06-12 19:37:18] 2024-06-13 02:36:57,841 | INFO     | sum of square deviations: 7329837645.303137
[2024-06-12 19:37:18] 2024-06-13 02:36:57,842 | INFO     | sum of deviations: -35282379866.13237
[2024-06-12 19:37:18] 2024-06-13 02:36:57,842 | INFO     | mean x: 1718237481.5923345
[2024-06-12 19:37:18] 2024-06-13 02:36:57,842 | INFO     | mean y: 2759882.212543554
[2024-06-12 19:37:18] 2024-06-13 02:36:57,842 | INFO     | -- intersect: 8273544374.228422
[2024-06-12 19:37:18] 2024-06-13 02:36:57,842 | INFO     | intersect: 8273544374.228422
[2024-06-12 19:37:18] 2024-06-13 02:36:57,842 | INFO     | chi2: 0.8977457615618907
[2024-06-12 19:37:18] 2024-06-13 02:36:57,842 | INFO     | current chi2=0.8977457615618907 (change=43.96677904447003 %)
[2024-06-12 19:37:18] 2024-06-13 02:36:57,843 | INFO     | model: linear, x: [1718229063.0, 1718229126.0, 1718229185.0, 1718229246.0, 1718229307.0, 1718229368.0, 1718229430.0, 1718229490.0, 1718229551.0, 1718229613.0, 1718
[2024-06-12 19:37:18] 2024-06-13 02:36:57,843 | INFO     | sum of square deviations: 6953304316.017712
[2024-06-12 19:37:18] 2024-06-13 02:36:57,844 | INFO     | sum of deviations: -38726064649.25177
[2024-06-12 19:37:18] 2024-06-13 02:36:57,844 | INFO     | mean x: 1718237634.1028368
[2024-06-12 19:37:18] 2024-06-13 02:36:57,844 | INFO     | mean y: 2761241.939716312
[2024-06-12 19:37:18] 2024-06-13 02:36:57,844 | INFO     | -- intersect: 9572395861.232908
[2024-06-12 19:37:18] 2024-06-13 02:36:57,844 | INFO     | intersect: 9572395861.232908
[2024-06-12 19:37:18] 2024-06-13 02:36:57,844 | INFO     | chi2: 0.8608613617068807
[2024-06-12 19:37:18] 2024-06-13 02:36:57,844 | INFO     | current chi2=0.8608613617068807 (change=4.108557392778869 %)
[2024-06-12 19:37:18] 2024-06-13 02:36:57,844 | INFO     | left removable region: 40
[2024-06-12 19:37:18] 2024-06-13 02:36:57,845 | INFO     | model: linear, x: [1718230283.0, 1718230344.0, 1718230405.0, 1718230466.0, 1718230528.0, 1718230588.0, 1718230649.0, 1718230710.0, 1718230774.0, 1718230832.0, 1718
[2024-06-12 19:37:18] 2024-06-13 02:36:57,845 | INFO     | sum of square deviations: 5201795106.746094
[2024-06-12 19:37:18] 2024-06-13 02:36:57,846 | INFO     | sum of deviations: 5877426972.136719
[2024-06-12 19:37:18] 2024-06-13 02:36:57,846 | INFO     | mean x: 1718238061.1289062
[2024-06-12 19:37:18] 2024-06-13 02:36:57,846 | INFO     | mean y: 2758997.23828125
[2024-06-12 19:37:18] 2024-06-13 02:36:57,846 | INFO     | -- intersect: -1938651327.0426574
[2024-06-12 19:37:18] 2024-06-13 02:36:57,846 | INFO     | intersect: -1938651327.0426574
[2024-06-12 19:37:18] 2024-06-13 02:36:57,846 | INFO     | chi2: 0.011200487941579951
[2024-06-12 19:37:18] 2024-06-13 02:36:57,846 | INFO     | -- intersect: -1938651327.0426574
[2024-06-12 19:37:18] 2024-06-13 02:36:57,846 | INFO     | current memory leak: 1.13 B/s (using 256 data points, chi2=0.01)
[2024-06-12 19:37:18] 2024-06-13 02:36:57,847 | INFO     | ..............................
[2024-06-12 19:37:18] 2024-06-13 02:36:57,847 | INFO     | . Timing measurements:
[2024-06-12 19:37:18] 2024-06-13 02:36:57,847 | INFO     | . get job = 0 s
[2024-06-12 19:37:18] 2024-06-13 02:36:57,847 | INFO     | . initial setup = 1 s
[2024-06-12 19:37:18] 2024-06-13 02:36:57,847 | INFO     | . payload setup = 5 s
[2024-06-12 19:37:18] 2024-06-13 02:36:57,847 | INFO     | . stage-in = 0 s
[2024-06-12 19:37:18] 2024-06-13 02:36:57,847 | INFO     | . payload execution = 18370 s
[2024-06-12 19:37:18] 2024-06-13 02:36:57,847 | INFO     | . stage-out = 2 s
[2024-06-12 19:37:18] 2024-06-13 02:36:57,847 | INFO     | . log creation = 0 s
[2024-06-12 19:37:18] 2024-06-13 02:36:57,847 | INFO     | ..............................
[2024-06-12 19:37:18] 2024-06-13 02:36:58,372 | INFO     | 
[2024-06-12 19:37:18] 2024-06-13 02:36:58,373 | INFO     | job summary report
[2024-06-12 19:37:18] 2024-06-13 02:36:58,373 | INFO     | --------------------------------------------------
[2024-06-12 19:37:18] 2024-06-13 02:36:58,373 | INFO     | PanDA job id: 6227563896
[2024-06-12 19:37:18] 2024-06-13 02:36:58,373 | INFO     | task id: 38921007
[2024-06-12 19:37:18] 2024-06-13 02:36:58,373 | INFO     | errors: (none)
[2024-06-12 19:37:18] 2024-06-13 02:36:58,373 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-12 19:37:18] 2024-06-13 02:36:58,374 | INFO     | pilot state: finished 
[2024-06-12 19:37:18] 2024-06-13 02:36:58,374 | INFO     | transexitcode: 0
[2024-06-12 19:37:18] 2024-06-13 02:36:58,374 | INFO     | exeerrorcode: 0
[2024-06-12 19:37:18] 2024-06-13 02:36:58,374 | INFO     | exeerrordiag: 
[2024-06-12 19:37:18] 2024-06-13 02:36:58,374 | INFO     | exitcode: 0
[2024-06-12 19:37:18] 2024-06-13 02:36:58,374 | INFO     | exitmsg: OK
[2024-06-12 19:37:18] 2024-06-13 02:36:58,374 | INFO     | cpuconsumptiontime: 96310 s
[2024-06-12 19:37:18] 2024-06-13 02:36:58,374 | INFO     | nevents: 400
[2024-06-12 19:37:18] 2024-06-13 02:36:58,374 | INFO     | neventsw: 0
[2024-06-12 19:37:18] 2024-06-13 02:36:58,374 | INFO     | pid: 46747
[2024-06-12 19:37:18] 2024-06-13 02:36:58,374 | INFO     | pgrp: 46747
[2024-06-12 19:37:18] 2024-06-13 02:36:58,375 | INFO     | corecount: 12
[2024-06-12 19:37:18] 2024-06-13 02:36:58,375 | INFO     | event service: False
[2024-06-12 19:37:18] 2024-06-13 02:36:58,375 | INFO     | sizes: {0: 2393368, 4: 2393574, 11: 2393602, 18380: 2425795, 18382: 2434749, 18383: 2434805, 18387: 2435103}
[2024-06-12 19:37:18] 2024-06-13 02:36:58,375 | INFO     | --------------------------------------------------
[2024-06-12 19:37:18] 2024-06-13 02:36:58,375 | INFO     | 
[2024-06-12 19:37:18] 2024-06-13 02:36:58,375 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-06-12 19:37:18] 2024-06-13 02:36:58,400 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-12 19:37:18] 2024-06-13 02:36:58,400 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-12 19:37:18] 2024-06-13 02:36:58,400 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-12 19:37:18] 2024-06-13 02:36:58,401 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-12 19:37:18] 2024-06-13 02:36:58,401 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-12 19:37:18] 2024-06-13 02:36:58,401 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-12 19:37:18] 2024-06-13 02:36:58,401 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-12 19:37:18] 2024-06-13 02:36:58,401 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-12 19:37:18] 2024-06-13 02:36:58,401 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-12 19:37:18] 2024-06-13 02:36:58,401 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-12 19:37:18] 2024-06-13 02:36:58,401 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-12 19:37:18] 2024-06-13 02:36:58,401 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-12 19:37:18] 2024-06-13 02:36:58,401 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-12 19:37:18] 2024-06-13 02:36:58,401 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-12 19:37:18] 2024-06-13 02:36:58,401 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-12 19:37:18] 2024-06-13 02:36:58,401 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-12 19:37:18] 2024-06-13 02:36:58,401 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-12 19:37:18] 2024-06-13 02:36:58,401 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-12 19:37:18] 2024-06-13 02:36:58,401 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-12 19:37:18] 2024-06-13 02:36:58,402 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-12 19:37:18] 2024-06-13 02:36:58,402 | INFO     | job 6227563896 has completed (purged errors)
[2024-06-12 19:37:18] 2024-06-13 02:36:58,402 | INFO     | overall cleanup function is called
[2024-06-12 19:37:18] 2024-06-13 02:36:59,408 | INFO     | --- collectZombieJob: --- 10, [46747]
[2024-06-12 19:37:18] 2024-06-13 02:36:59,408 | INFO     | zombie collector waiting for pid 46747
[2024-06-12 19:37:18] 2024-06-13 02:36:59,409 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-12 19:37:18] 2024-06-13 02:37:00,413 | INFO     | collected zombie processes
[2024-06-12 19:37:18] 2024-06-13 02:37:00,413 | INFO     | will now attempt to kill all subprocesses of pid=46747
[2024-06-12 19:37:18] 2024-06-13 02:37:00,535 | INFO     | process IDs to be killed: [46747] (in reverse order)
[2024-06-12 19:37:18] 2024-06-13 02:37:00,616 | WARNING  | found no corresponding commands to process id(s)
[2024-06-12 19:37:18] 2024-06-13 02:37:00,616 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-12 19:37:18] 2024-06-13 02:37:00,620 | INFO     | did not find any defunct processes belonging to 46747
[2024-06-12 19:37:18] 2024-06-13 02:37:00,624 | INFO     | did not find any defunct processes belonging to 46747
[2024-06-12 19:37:18] 2024-06-13 02:37:00,624 | INFO     | ready for new job
[2024-06-12 19:37:18] 2024-06-13 02:37:00,624 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-12 19:37:18] 2024-06-13 02:37:00,626 | INFO     | *************************************
[2024-06-12 19:37:18] 2024-06-13 02:37:00,626 | INFO     | ***  PanDA Pilot version 3.7.6.8  ***
[2024-06-12 19:37:18] 2024-06-13 02:37:00,626 | INFO     | *************************************
[2024-06-12 19:37:18] 2024-06-13 02:37:00,627 | INFO     | 
[2024-06-12 19:37:18] 2024-06-13 02:37:00,629 | INFO     | architecture information:
[2024-06-12 19:37:18] 2024-06-13 02:37:00,629 | INFO     | executing command: cat /etc/os-release
[2024-06-12 19:37:18] 2024-06-13 02:37:00,643 | INFO     | cat /etc/os-release:
[2024-06-12 19:37:18] NAME="CentOS Linux"
[2024-06-12 19:37:18] VERSION="7 (Core)"
[2024-06-12 19:37:18] ID="centos"
[2024-06-12 19:37:18] ID_LIKE="rhel fedora"
[2024-06-12 19:37:18] VERSION_ID="7"
[2024-06-12 19:37:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-12 19:37:18] ANSI_COLOR="0;31"
[2024-06-12 19:37:18] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-12 19:37:18] HOME_URL="https://www.centos.org/"
[2024-06-12 19:37:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-12 19:37:18] 
[2024-06-12 19:37:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-12 19:37:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-12 19:37:18] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-12 19:37:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-12 19:37:18] 
[2024-06-12 19:37:18] 2024-06-13 02:37:00,643 | INFO     | *************************************
[2024-06-12 19:37:18] 2024-06-13 02:37:01,146 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-06-12 19:37:18] 2024-06-13 02:37:01,170 | INFO     | sufficient remaining disk space (1862250004480 B)
[2024-06-12 19:37:18] 2024-06-13 02:37:01,170 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-12 19:37:18] 2024-06-13 02:37:01,171 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-12 19:37:18] 2024-06-13 02:37:01,171 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-12 19:37:18] 2024-06-13 02:37:01,171 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-12 19:37:18] 2024-06-13 02:37:01,172 | INFO     | aborting loop
[2024-06-12 19:37:18] 2024-06-13 02:37:01,325 | INFO     | all data control threads have been joined
[2024-06-12 19:37:18] 2024-06-13 02:37:01,336 | INFO     | found 0 job(s) in 20 queues
[2024-06-12 19:37:18] 2024-06-13 02:37:01,337 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-12 19:37:18] 2024-06-13 02:37:01,337 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-12 19:37:18] 2024-06-13 02:37:01,423 | INFO     | all payload control threads have been joined
[2024-06-12 19:37:18] 2024-06-13 02:37:02,176 | INFO     | [job] retrieve thread has finished
[2024-06-12 19:37:18] 2024-06-13 02:37:02,177 | INFO     | [job] job monitor thread has finished
[2024-06-12 19:37:18] 2024-06-13 02:37:02,185 | INFO     | [job] validate thread has finished
[2024-06-12 19:37:18] 2024-06-13 02:37:02,326 | INFO     | [data] control thread has finished
[2024-06-12 19:37:18] 2024-06-13 02:37:02,408 | INFO     | [payload] execute_payloads thread has finished
[2024-06-12 19:37:18] 2024-06-13 02:37:02,425 | INFO     | [payload] control thread has finished
[2024-06-12 19:37:18] 2024-06-13 02:37:02,831 | INFO     | all job control threads have been joined
[2024-06-12 19:37:18] 2024-06-13 02:37:02,904 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-12 19:37:18] 2024-06-13 02:37:03,174 | INFO     | [data] copytool_out thread has finished
[2024-06-12 19:37:18] 2024-06-13 02:37:03,274 | INFO     | [job] create_data_payload thread has finished
[2024-06-12 19:37:18] 2024-06-13 02:37:03,280 | INFO     | [payload] validate_post thread has finished
[2024-06-12 19:37:18] 2024-06-13 02:37:03,367 | INFO     | [payload] validate_pre thread has finished
[2024-06-12 19:37:18] 2024-06-13 02:37:03,397 | INFO     | [payload] failed_post thread has finished
[2024-06-12 19:37:18] 2024-06-13 02:37:03,456 | INFO     | [data] copytool_in thread has finished
[2024-06-12 19:37:18] 2024-06-13 02:37:03,836 | INFO     | [job] control thread has finished
[2024-06-12 19:37:18] 2024-06-13 02:37:03,908 | INFO     | [job] queue monitor thread has finished
[2024-06-12 19:37:18] 2024-06-13 02:37:04,278 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-12 19:37:18] 2024-06-13 02:37:08,283 | INFO     | [data] queue_monitor thread has finished
[2024-06-12 19:37:18] 2024-06-13 02:37:11,510 | INFO     | job.realtimelogging is not enabled
[2024-06-12 19:37:18] 2024-06-13 02:37:12,511 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-12 19:37:18] 2024-06-13 02:37:12,623 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140286480844608)>', '<ExcThread(monitor, started 140286197995264)>']
[2024-06-12 19:37:18] 2024-06-13 02:37:13,375 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-12 19:37:18] 2024-06-13 02:37:13,376 | INFO     | [monitor] control thread has ended
[2024-06-12 19:37:18] 2024-06-13 02:37:17,648 | INFO     | all workflow threads have been joined
[2024-06-12 19:37:18] 2024-06-13 02:37:17,649 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-12 19:37:18] 2024-06-13 02:37:17,649 | INFO     | traces error code: 0
[2024-06-12 19:37:18] 2024-06-13 02:37:17,650 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-12 19:37:18] 2024-06-13 02:37:17,784 [wrapper] ==== pilot stdout END ====
[2024-06-12 19:37:18] 2024-06-13 02:37:17,787 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-12 19:37:18] 2024-06-13 02:37:17,789 [wrapper] pilotpid: 40261
[2024-06-12 19:37:18] 2024-06-13 02:37:17,792 [wrapper] Pilot exit status: 0
[2024-06-12 19:37:18] 2024-06-13 02:37:17,801 [wrapper] pandaids: 6227563896
[2024-06-12 19:37:18] 2024-06-13 02:37:17,862 [wrapper] cleanup supervisor_pilot 225235 40262
[2024-06-12 19:37:18] 2024-06-13 02:37:17,866 [wrapper] Test setup, not cleaning
[2024-06-12 19:37:18] 2024-06-13 02:37:17,869 [wrapper] ==== wrapper stdout END ====
[2024-06-12 19:37:18] 2024-06-13 02:37:17,871 [wrapper] ==== wrapper stderr END ====
[2024-06-12 19:37:18] 2024-06-13 02:37:17,876 [wrapper] apfmon messages muted
[2024-06-12 19:37:18]  *** Error codes and diagnostics ***
[2024-06-12 19:37:18]     "exeErrorCode": 0,
[2024-06-12 19:37:18]     "exeErrorDiag": "",
[2024-06-12 19:37:18]     "pilotErrorCode": 0,
[2024-06-12 19:37:18]     "pilotErrorDiag": "",
[2024-06-12 19:37:18]  *** Listing of results directory ***
[2024-06-12 19:37:18] total 929644
[2024-06-12 19:37:18] -rw-r--r-- 1 boinc boinc    469443 Jun 11 08:34 pilot3.tar.gz
[2024-06-12 19:37:18] -rw-r--r-- 1 boinc boinc      5654 Jun 11 08:42 queuedata.json
[2024-06-12 19:37:18] -rwx------ 1 boinc boinc     32308 Jun 11 08:45 runpilot2-wrapper.sh
[2024-06-12 19:37:18] -rw-r--r-- 1 boinc boinc       100 Jun 12 14:30 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-12 19:37:18] -rwxr-xr-x 1 boinc boinc      7986 Jun 12 14:30 run_atlas
[2024-06-12 19:37:18] -rw-r--r-- 1 boinc boinc       105 Jun 12 14:30 job.xml
[2024-06-12 19:37:18] -rw-r--r-- 2 boinc boinc 584799541 Jun 12 14:30 EVNT.38776201._000839.pool.root.1
[2024-06-12 19:37:18] -rw-r--r-- 1 boinc boinc      6629 Jun 12 14:30 init_data.xml
[2024-06-12 19:37:18] -rw-r--r-- 2 boinc boinc     17537 Jun 12 14:30 start_atlas.sh
[2024-06-12 19:37:18] drwxrwx--x 2 boinc boinc      4096 Jun 12 14:30 shared
[2024-06-12 19:37:18] -rw-r--r-- 2 boinc boinc    482050 Jun 12 14:30 input.tar.gz
[2024-06-12 19:37:18] -rw-r--r-- 1 boinc boinc         0 Jun 12 14:30 boinc_lockfile
[2024-06-12 19:37:18] -rw-r--r-- 1 boinc boinc      2631 Jun 12 14:30 pandaJob.out
[2024-06-12 19:37:18] -rw------- 1 boinc boinc       424 Jun 12 14:30 setup.sh.local
[2024-06-12 19:37:18] -rw------- 1 boinc boinc   1026722 Jun 12 14:30 agis_schedconf.cvmfs.json
[2024-06-12 19:37:18] -rw------- 1 boinc boinc   1324173 Jun 12 14:30 cric_ddmendpoints.json
[2024-06-12 19:37:18] drwx------ 4 boinc boinc      4096 Jun 12 14:30 pilot3
[2024-06-12 19:37:18] -rw------- 1 boinc boinc 358957576 Jun 12 19:36 HITS.38921007._033450.pool.root.1
[2024-06-12 19:37:18] -rw-r--r-- 1 boinc boinc       531 Jun 12 19:36 boinc_task_state.xml
[2024-06-12 19:37:18] -rw------- 1 boinc boinc        95 Jun 12 19:36 pilot_heartbeat.json
[2024-06-12 19:37:18] -rw------- 1 boinc boinc      1067 Jun 12 19:36 memory_monitor_summary.json
[2024-06-12 19:37:18] -rw------- 1 boinc boinc         0 Jun 12 19:36 agis_ddmendpoints.agis.ALL.json
[2024-06-12 19:37:18] -rw------- 1 boinc boinc    515471 Jun 12 19:36 log.38921007._033450.job.log.tgz.1
[2024-06-12 19:37:18] -rw-r--r-- 1 boinc boinc        28 Jun 12 19:36 wrapper_checkpoint.txt
[2024-06-12 19:37:18] -rw-r--r-- 1 boinc boinc      8192 Jun 12 19:36 boinc_mmap_file
[2024-06-12 19:37:18] -rw------- 1 boinc boinc      7790 Jun 12 19:36 heartbeat.json
[2024-06-12 19:37:18] -rw------- 1 boinc boinc      4282 Jun 12 19:37 pilotlog.txt
[2024-06-12 19:37:18] -rw------- 1 boinc boinc   1812158 Jun 12 19:37 log.38921007._033450.job.log.1
[2024-06-12 19:37:18] -rw------- 1 boinc boinc       357 Jun 12 19:37 output.list
[2024-06-12 19:37:18] -rw-r--r-- 1 boinc boinc       620 Jun 12 19:37 runtime_log
[2024-06-12 19:37:18] -rw------- 1 boinc boinc   2344960 Jun 12 19:37 result.tar.gz
[2024-06-12 19:37:18] -rw-r--r-- 1 boinc boinc     11287 Jun 12 19:37 runtime_log.err
[2024-06-12 19:37:18] -rw------- 1 boinc boinc       659 Jun 12 19:37 nIaMDmerIb5n7Olcko1bjSoqABFKDmABFKDmOtvXDmMlnKDmjEsD2m.diag
[2024-06-12 19:37:18] -rw-r--r-- 1 boinc boinc     21866 Jun 12 19:37 stderr.txt
[2024-06-12 19:37:18] HITS file was successfully produced:
[2024-06-12 19:37:18] -rw------- 1 boinc boinc 358957576 Jun 12 19:36 shared/HITS.pool.root.1
[2024-06-12 19:37:18]  *** Contents of shared directory: ***
[2024-06-12 19:37:18] total 924436
[2024-06-12 19:37:18] -rw-r--r-- 2 boinc boinc 584799541 Jun 12 14:30 ATLAS.root_0
[2024-06-12 19:37:18] -rw-r--r-- 2 boinc boinc     17537 Jun 12 14:30 start_atlas.sh
[2024-06-12 19:37:18] -rw-r--r-- 2 boinc boinc    482050 Jun 12 14:30 input.tar.gz
[2024-06-12 19:37:18] -rw------- 1 boinc boinc 358957576 Jun 12 19:36 HITS.pool.root.1
[2024-06-12 19:37:18] -rw------- 1 boinc boinc   2344960 Jun 12 19:37 result.tar.gz
19:37:20 (35965): run_atlas exited; CPU time 95931.332943
19:37:20 (35965): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN