Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
07:12:39 (108938): wrapper (7.7.26015): starting
07:12:39 (108938): wrapper: running run_atlas (--nthreads 12)
[2024-06-12 07:12:39] Arguments: --nthreads 12
[2024-06-12 07:12:39] Threads: 12
[2024-06-12 07:12:39] Checking for CVMFS
[2024-06-12 07:12:40] Probing /cvmfs/atlas.cern.ch... OK
[2024-06-12 07:12:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-06-12 07:12:40] Running cvmfs_config stat atlas.cern.ch
[2024-06-12 07:12:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-06-12 07:12:40] 2.11.3.0 144541 221020 166932 133791 0 595 36868456 45568000 9465 130560 0 343170901 99.775 212365991 19092 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2024-06-12 07:12:40] CVMFS is ok
[2024-06-12 07:12:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-12 07:12:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-12 07:12:40] Further information can be found at the LHC@home message board.
[2024-06-12 07:12:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-12 07:12:40] Checking for apptainer binary...
[2024-06-12 07:12:40] Using apptainer found in PATH at /usr/bin/apptainer
[2024-06-12 07:12:40] Running /usr/bin/apptainer --version
[2024-06-12 07:12:40] apptainer version 1.1.8-1.el7
[2024-06-12 07:12:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-12 07:12:41] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0048.triumf.lcg
[2024-06-12 07:12:41] apptainer works
[2024-06-12 07:12:41] Set ATHENA_PROC_NUMBER=12
[2024-06-12 07:12:41] Set ATHENA_CORE_NUMBER=12
[2024-06-12 07:12:41] Starting ATLAS job with PandaID=6227184411
[2024-06-12 07:12:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-12 14:29:58]  *** The last 200 lines of the pilot log: ***
[2024-06-12 14:29:58] 2024-06-12 21:29:42,242 | INFO     | -- intersect: -20223077981.839977
[2024-06-12 14:29:58] 2024-06-12 21:29:42,242 | INFO     | intersect: -20223077981.839977
[2024-06-12 14:29:58] 2024-06-12 21:29:42,242 | INFO     | chi2: 6.62280869265067
[2024-06-12 14:29:58] 2024-06-12 21:29:42,242 | INFO     | model: linear, x: [1718201593.0, 1718201654.0, 1718201715.0, 1718201776.0, 1718201837.0, 1718201898.0, 1718201959.0, 1718202020.0, 1718202081.0, 1718202142.0, 1718
[2024-06-12 14:29:58] 2024-06-12 21:29:42,243 | INFO     | sum of square deviations: 23806805823.519905
[2024-06-12 14:29:58] 2024-06-12 21:29:42,245 | INFO     | sum of deviations: 317857919218.2396
[2024-06-12 14:29:58] 2024-06-12 21:29:42,245 | INFO     | mean x: 1718214526.76
[2024-06-12 14:29:58] 2024-06-12 21:29:42,245 | INFO     | mean y: 2715471.0023529413
[2024-06-12 14:29:58] 2024-06-12 21:29:42,245 | INFO     | -- intersect: -22938123308.25629
[2024-06-12 14:29:58] 2024-06-12 21:29:42,245 | INFO     | intersect: -22938123308.25629
[2024-06-12 14:29:58] 2024-06-12 21:29:42,246 | INFO     | chi2: 5.860131500353226
[2024-06-12 14:29:58] 2024-06-12 21:29:42,246 | INFO     | current chi2=5.860131500353226 (change=11.515917606736648 %)
[2024-06-12 14:29:58] 2024-06-12 21:29:42,246 | INFO     | right removable region: 424
[2024-06-12 14:29:58] 2024-06-12 21:29:42,246 | INFO     | model: linear, x: [1718201898.0, 1718201959.0, 1718202020.0, 1718202081.0, 1718202142.0, 1718202203.0, 1718202264.0, 1718202325.0, 1718202386.0, 1718202447.0, 1718
[2024-06-12 14:29:58] 2024-06-12 21:29:42,246 | INFO     | sum of square deviations: 23806349543.519905
[2024-06-12 14:29:58] 2024-06-12 21:29:42,249 | INFO     | sum of deviations: 164500348563.08017
[2024-06-12 14:29:58] 2024-06-12 21:29:42,249 | INFO     | mean x: 1718214831.76
[2024-06-12 14:29:58] 2024-06-12 21:29:42,249 | INFO     | mean y: 2733101.3341176473
[2024-06-12 14:29:58] 2024-06-12 21:29:42,249 | INFO     | -- intersect: -11870021191.131975
[2024-06-12 14:29:58] 2024-06-12 21:29:42,249 | INFO     | intersect: -11870021191.131975
[2024-06-12 14:29:58] 2024-06-12 21:29:42,249 | INFO     | chi2: 3.8653724726014
[2024-06-12 14:29:58] 2024-06-12 21:29:42,250 | INFO     | current chi2=3.8653724726014 (change=41.63545027518607 %)
[2024-06-12 14:29:58] 2024-06-12 21:29:42,250 | INFO     | model: linear, x: [1718202203.0, 1718202264.0, 1718202325.0, 1718202386.0, 1718202447.0, 1718202508.0, 1718202569.0, 1718202630.0, 1718202691.0, 1718202752.0, 1718
[2024-06-12 14:29:58] 2024-06-12 21:29:42,250 | INFO     | sum of square deviations: 22975836052.847443
[2024-06-12 14:29:58] 2024-06-12 21:29:42,253 | INFO     | sum of deviations: 52829592893.3762
[2024-06-12 14:29:58] 2024-06-12 21:29:42,253 | INFO     | mean x: 1718214984.2809525
[2024-06-12 14:29:58] 2024-06-12 21:29:42,253 | INFO     | mean y: 2753609.2595238094
[2024-06-12 14:29:58] 2024-06-12 21:29:42,253 | INFO     | -- intersect: -3948031812.1750913
[2024-06-12 14:29:58] 2024-06-12 21:29:42,253 | INFO     | intersect: -3948031812.1750913
[2024-06-12 14:29:58] 2024-06-12 21:29:42,253 | INFO     | chi2: 1.8322091560325284
[2024-06-12 14:29:58] 2024-06-12 21:29:42,253 | INFO     | current chi2=1.8322091560325284 (change=52.59941521755989 %)
[2024-06-12 14:29:58] 2024-06-12 21:29:42,253 | INFO     | model: linear, x: [1718202508.0, 1718202569.0, 1718202630.0, 1718202691.0, 1718202752.0, 1718202813.0, 1718202874.0, 1718202935.0, 1718202996.0, 1718203057.0, 1718
[2024-06-12 14:29:58] 2024-06-12 21:29:42,253 | INFO     | sum of square deviations: 22164857811.797592
[2024-06-12 14:29:58] 2024-06-12 21:29:42,256 | INFO     | sum of deviations: -17534443458.28675
[2024-06-12 14:29:58] 2024-06-12 21:29:42,256 | INFO     | mean x: 1718215136.8024096
[2024-06-12 14:29:58] 2024-06-12 21:29:42,256 | INFO     | mean y: 2766802.886746988
[2024-06-12 14:29:58] 2024-06-12 21:29:42,256 | INFO     | -- intersect: 1362033188.4982178
[2024-06-12 14:29:58] 2024-06-12 21:29:42,256 | INFO     | intersect: 1362033188.4982178
[2024-06-12 14:29:58] 2024-06-12 21:29:42,257 | INFO     | chi2: 0.8540516177253675
[2024-06-12 14:29:58] 2024-06-12 21:29:42,257 | INFO     | current chi2=0.8540516177253675 (change=53.3867836587645 %)
[2024-06-12 14:29:58] 2024-06-12 21:29:42,257 | INFO     | model: linear, x: [1718202813.0, 1718202874.0, 1718202935.0, 1718202996.0, 1718203057.0, 1718203118.0, 1718203179.0, 1718203240.0, 1718203301.0, 1718203362.0, 1718
[2024-06-12 14:29:58] 2024-06-12 21:29:42,257 | INFO     | sum of square deviations: 21373182257.856155
[2024-06-12 14:29:58] 2024-06-12 21:29:42,259 | INFO     | sum of deviations: -28350005929.44391
[2024-06-12 14:29:58] 2024-06-12 21:29:42,259 | INFO     | mean x: 1718215289.3243902
[2024-06-12 14:29:58] 2024-06-12 21:29:42,260 | INFO     | mean y: 2768874.424390244
[2024-06-12 14:29:58] 2024-06-12 21:29:42,260 | INFO     | -- intersect: 2281859234.1438823
[2024-06-12 14:29:58] 2024-06-12 21:29:42,260 | INFO     | intersect: 2281859234.1438823
[2024-06-12 14:29:58] 2024-06-12 21:29:42,260 | INFO     | chi2: 0.8102846093182221
[2024-06-12 14:29:58] 2024-06-12 21:29:42,260 | INFO     | current chi2=0.8102846093182221 (change=5.124632691840334 %)
[2024-06-12 14:29:58] 2024-06-12 21:29:42,260 | INFO     | left removable region: 40
[2024-06-12 14:29:58] 2024-06-12 21:29:42,260 | INFO     | model: linear, x: [1718204033.0, 1718204094.0, 1718204155.0, 1718204216.0, 1718204277.0, 1718204338.0, 1718204399.0, 1718204460.0, 1718204521.0, 1718204582.0, 1718
[2024-06-12 14:29:58] 2024-06-12 21:29:42,260 | INFO     | sum of square deviations: 17559178850.958344
[2024-06-12 14:29:58] 2024-06-12 21:29:42,263 | INFO     | sum of deviations: 2668250155.145833
[2024-06-12 14:29:58] 2024-06-12 21:29:42,263 | INFO     | mean x: 1718215716.4479167
[2024-06-12 14:29:58] 2024-06-12 21:29:42,263 | INFO     | mean y: 2774414.0572916665
[2024-06-12 14:29:58] 2024-06-12 21:29:42,263 | INFO     | -- intersect: -258321471.51345885
[2024-06-12 14:29:58] 2024-06-12 21:29:42,263 | INFO     | intersect: -258321471.51345885
[2024-06-12 14:29:58] 2024-06-12 21:29:42,263 | INFO     | chi2: 0.012633036303107772
[2024-06-12 14:29:58] 2024-06-12 21:29:42,263 | INFO     | -- intersect: -258321471.51345885
[2024-06-12 14:29:58] 2024-06-12 21:29:42,263 | INFO     | current memory leak: 0.15 B/s (using 384 data points, chi2=0.01)
[2024-06-12 14:29:58] 2024-06-12 21:29:42,264 | INFO     | ..............................
[2024-06-12 14:29:58] 2024-06-12 21:29:42,264 | INFO     | . Timing measurements:
[2024-06-12 14:29:58] 2024-06-12 21:29:42,264 | INFO     | . get job = 0 s
[2024-06-12 14:29:58] 2024-06-12 21:29:42,264 | INFO     | . initial setup = 1 s
[2024-06-12 14:29:58] 2024-06-12 21:29:42,264 | INFO     | . payload setup = 4 s
[2024-06-12 14:29:58] 2024-06-12 21:29:42,264 | INFO     | . stage-in = 0 s
[2024-06-12 14:29:58] 2024-06-12 21:29:42,264 | INFO     | . payload execution = 26178 s
[2024-06-12 14:29:58] 2024-06-12 21:29:42,264 | INFO     | . stage-out = 1 s
[2024-06-12 14:29:58] 2024-06-12 21:29:42,264 | INFO     | . log creation = 0 s
[2024-06-12 14:29:58] 2024-06-12 21:29:42,264 | INFO     | ..............................
[2024-06-12 14:29:58] 2024-06-12 21:29:42,807 | INFO     | 
[2024-06-12 14:29:58] 2024-06-12 21:29:42,808 | INFO     | job summary report
[2024-06-12 14:29:58] 2024-06-12 21:29:42,808 | INFO     | --------------------------------------------------
[2024-06-12 14:29:58] 2024-06-12 21:29:42,808 | INFO     | PanDA job id: 6227184411
[2024-06-12 14:29:58] 2024-06-12 21:29:42,808 | INFO     | task id: 38921001
[2024-06-12 14:29:58] 2024-06-12 21:29:42,808 | INFO     | errors: (none)
[2024-06-12 14:29:58] 2024-06-12 21:29:42,809 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-12 14:29:58] 2024-06-12 21:29:42,809 | INFO     | pilot state: finished 
[2024-06-12 14:29:58] 2024-06-12 21:29:42,809 | INFO     | transexitcode: 0
[2024-06-12 14:29:58] 2024-06-12 21:29:42,809 | INFO     | exeerrorcode: 0
[2024-06-12 14:29:58] 2024-06-12 21:29:42,809 | INFO     | exeerrordiag: 
[2024-06-12 14:29:58] 2024-06-12 21:29:42,809 | INFO     | exitcode: 0
[2024-06-12 14:29:58] 2024-06-12 21:29:42,809 | INFO     | exitmsg: OK
[2024-06-12 14:29:58] 2024-06-12 21:29:42,809 | INFO     | cpuconsumptiontime: 88507 s
[2024-06-12 14:29:58] 2024-06-12 21:29:42,809 | INFO     | nevents: 400
[2024-06-12 14:29:58] 2024-06-12 21:29:42,809 | INFO     | neventsw: 0
[2024-06-12 14:29:58] 2024-06-12 21:29:42,809 | INFO     | pid: 119796
[2024-06-12 14:29:58] 2024-06-12 21:29:42,809 | INFO     | pgrp: 119796
[2024-06-12 14:29:58] 2024-06-12 21:29:42,810 | INFO     | corecount: 12
[2024-06-12 14:29:58] 2024-06-12 21:29:42,810 | INFO     | event service: False
[2024-06-12 14:29:58] 2024-06-12 21:29:42,810 | INFO     | sizes: {0: 2393486, 4: 2393692, 11: 2393720, 26187: 2428703, 26190: 2437657, 26191: 2437713, 26197: 2438011}
[2024-06-12 14:29:58] 2024-06-12 21:29:42,810 | INFO     | --------------------------------------------------
[2024-06-12 14:29:58] 2024-06-12 21:29:42,810 | INFO     | 
[2024-06-12 14:29:58] 2024-06-12 21:29:42,810 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-06-12 14:29:58] 2024-06-12 21:29:42,840 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-12 14:29:58] 2024-06-12 21:29:42,841 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-12 14:29:58] 2024-06-12 21:29:42,841 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-12 14:29:58] 2024-06-12 21:29:42,841 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-12 14:29:58] 2024-06-12 21:29:42,841 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-12 14:29:58] 2024-06-12 21:29:42,841 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-12 14:29:58] 2024-06-12 21:29:42,841 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-12 14:29:58] 2024-06-12 21:29:42,841 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-12 14:29:58] 2024-06-12 21:29:42,842 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-12 14:29:58] 2024-06-12 21:29:42,842 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-12 14:29:58] 2024-06-12 21:29:42,842 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-12 14:29:58] 2024-06-12 21:29:42,842 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-12 14:29:58] 2024-06-12 21:29:42,842 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-12 14:29:58] 2024-06-12 21:29:42,842 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-12 14:29:58] 2024-06-12 21:29:42,842 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-12 14:29:58] 2024-06-12 21:29:42,842 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-12 14:29:58] 2024-06-12 21:29:42,842 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-12 14:29:58] 2024-06-12 21:29:42,842 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-12 14:29:58] 2024-06-12 21:29:42,843 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-12 14:29:58] 2024-06-12 21:29:42,843 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-12 14:29:58] 2024-06-12 21:29:42,843 | INFO     | job 6227184411 has completed (purged errors)
[2024-06-12 14:29:58] 2024-06-12 21:29:42,843 | INFO     | overall cleanup function is called
[2024-06-12 14:29:58] 2024-06-12 21:29:43,851 | INFO     | --- collectZombieJob: --- 10, [119796]
[2024-06-12 14:29:58] 2024-06-12 21:29:43,852 | INFO     | zombie collector waiting for pid 119796
[2024-06-12 14:29:58] 2024-06-12 21:29:43,852 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-12 14:29:58] 2024-06-12 21:29:44,853 | INFO     | collected zombie processes
[2024-06-12 14:29:58] 2024-06-12 21:29:44,854 | INFO     | will now attempt to kill all subprocesses of pid=119796
[2024-06-12 14:29:58] 2024-06-12 21:29:45,022 | INFO     | process IDs to be killed: [119796] (in reverse order)
[2024-06-12 14:29:58] 2024-06-12 21:29:45,146 | WARNING  | found no corresponding commands to process id(s)
[2024-06-12 14:29:58] 2024-06-12 21:29:45,146 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-12 14:29:58] 2024-06-12 21:29:45,156 | INFO     | did not find any defunct processes belonging to 119796
[2024-06-12 14:29:58] 2024-06-12 21:29:45,166 | INFO     | did not find any defunct processes belonging to 119796
[2024-06-12 14:29:58] 2024-06-12 21:29:45,166 | INFO     | ready for new job
[2024-06-12 14:29:58] 2024-06-12 21:29:45,166 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-12 14:29:58] 2024-06-12 21:29:45,169 | INFO     | *************************************
[2024-06-12 14:29:58] 2024-06-12 21:29:45,169 | INFO     | ***  PanDA Pilot version 3.7.6.8  ***
[2024-06-12 14:29:58] 2024-06-12 21:29:45,169 | INFO     | *************************************
[2024-06-12 14:29:58] 2024-06-12 21:29:45,169 | INFO     | 
[2024-06-12 14:29:58] 2024-06-12 21:29:45,174 | INFO     | architecture information:
[2024-06-12 14:29:58] 2024-06-12 21:29:45,174 | INFO     | executing command: cat /etc/os-release
[2024-06-12 14:29:58] 2024-06-12 21:29:45,194 | INFO     | cat /etc/os-release:
[2024-06-12 14:29:58] NAME="CentOS Linux"
[2024-06-12 14:29:58] VERSION="7 (Core)"
[2024-06-12 14:29:58] ID="centos"
[2024-06-12 14:29:58] ID_LIKE="rhel fedora"
[2024-06-12 14:29:58] VERSION_ID="7"
[2024-06-12 14:29:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-12 14:29:58] ANSI_COLOR="0;31"
[2024-06-12 14:29:58] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-12 14:29:58] HOME_URL="https://www.centos.org/"
[2024-06-12 14:29:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-12 14:29:58] 
[2024-06-12 14:29:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-12 14:29:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-12 14:29:58] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-12 14:29:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-12 14:29:58] 
[2024-06-12 14:29:58] 2024-06-12 21:29:45,194 | INFO     | *************************************
[2024-06-12 14:29:58] 2024-06-12 21:29:45,698 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-06-12 14:29:58] 2024-06-12 21:29:45,718 | INFO     | sufficient remaining disk space (1895083016192 B)
[2024-06-12 14:29:58] 2024-06-12 21:29:45,719 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-12 14:29:58] 2024-06-12 21:29:45,719 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-12 14:29:58] 2024-06-12 21:29:45,761 | INFO     | all payload control threads have been joined
[2024-06-12 14:29:58] 2024-06-12 21:29:45,856 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-12 14:29:58] 2024-06-12 21:29:45,856 | INFO     | aborting loop
[2024-06-12 14:29:58] 2024-06-12 21:29:45,862 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-12 14:29:58] 2024-06-12 21:29:45,869 | INFO     | all job control threads have been joined
[2024-06-12 14:29:58] 2024-06-12 21:29:45,939 | INFO     | found 0 job(s) in 20 queues
[2024-06-12 14:29:58] 2024-06-12 21:29:45,939 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-12 14:29:58] 2024-06-12 21:29:45,939 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-12 14:29:58] 2024-06-12 21:29:46,197 | INFO     | all data control threads have been joined
[2024-06-12 14:29:58] 2024-06-12 21:29:46,724 | INFO     | [job] retrieve thread has finished
[2024-06-12 14:29:58] 2024-06-12 21:29:46,748 | INFO     | [payload] execute_payloads thread has finished
[2024-06-12 14:29:58] 2024-06-12 21:29:46,767 | INFO     | [payload] control thread has finished
[2024-06-12 14:29:58] 2024-06-12 21:29:46,862 | INFO     | [job] job monitor thread has finished
[2024-06-12 14:29:58] 2024-06-12 21:29:46,871 | INFO     | [job] control thread has finished
[2024-06-12 14:29:58] 2024-06-12 21:29:46,966 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-12 14:29:58] 2024-06-12 21:29:47,047 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-12 14:29:58] 2024-06-12 21:29:47,203 | INFO     | [data] control thread has finished
[2024-06-12 14:29:58] 2024-06-12 21:29:47,324 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-12 14:29:58] 2024-06-12 21:29:47,458 | INFO     | [job] validate thread has finished
[2024-06-12 14:29:58] 2024-06-12 21:29:47,723 | INFO     | [payload] validate_post thread has finished
[2024-06-12 14:29:58] 2024-06-12 21:29:47,807 | INFO     | [payload] validate_pre thread has finished
[2024-06-12 14:29:58] 2024-06-12 21:29:47,868 | INFO     | [data] copytool_out thread has finished
[2024-06-12 14:29:58] 2024-06-12 21:29:47,919 | INFO     | [job] create_data_payload thread has finished
[2024-06-12 14:29:58] 2024-06-12 21:29:48,139 | INFO     | [data] copytool_in thread has finished
[2024-06-12 14:29:58] 2024-06-12 21:29:48,220 | INFO     | [payload] failed_post thread has finished
[2024-06-12 14:29:58] 2024-06-12 21:29:48,329 | INFO     | [job] queue monitor thread has finished
[2024-06-12 14:29:58] 2024-06-12 21:29:50,973 | INFO     | [data] queue_monitor thread has finished
[2024-06-12 14:29:58] 2024-06-12 21:29:52,524 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140070128645952)>', '<ExcThread(monitor, started 140069847410432)>']
[2024-06-12 14:29:58] 2024-06-12 21:29:52,968 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-12 14:29:58] 2024-06-12 21:29:52,969 | INFO     | [monitor] control thread has ended
[2024-06-12 14:29:58] 2024-06-12 21:29:57,550 | INFO     | all workflow threads have been joined
[2024-06-12 14:29:58] 2024-06-12 21:29:57,550 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-12 14:29:58] 2024-06-12 21:29:57,551 | INFO     | traces error code: 0
[2024-06-12 14:29:58] 2024-06-12 21:29:57,551 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-12 14:29:58] 2024-06-12 21:29:57,660 [wrapper] ==== pilot stdout END ====
[2024-06-12 14:29:58] 2024-06-12 21:29:57,663 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-12 14:29:58] 2024-06-12 21:29:57,666 [wrapper] pilotpid: 113095
[2024-06-12 14:29:58] 2024-06-12 21:29:57,669 [wrapper] Pilot exit status: 0
[2024-06-12 14:29:58] 2024-06-12 21:29:57,680 [wrapper] pandaids: 6227184411
[2024-06-12 14:29:58] 2024-06-12 21:29:57,766 [wrapper] cleanup supervisor_pilot  32034 113096
[2024-06-12 14:29:58] 2024-06-12 21:29:57,770 [wrapper] Test setup, not cleaning
[2024-06-12 14:29:58] 2024-06-12 21:29:57,773 [wrapper] ==== wrapper stdout END ====
[2024-06-12 14:29:58] 2024-06-12 21:29:57,776 [wrapper] ==== wrapper stderr END ====
[2024-06-12 14:29:58] 2024-06-12 21:29:57,782 [wrapper] apfmon messages muted
[2024-06-12 14:29:58]  *** Error codes and diagnostics ***
[2024-06-12 14:29:58]     "exeErrorCode": 0,
[2024-06-12 14:29:58]     "exeErrorDiag": "",
[2024-06-12 14:29:58]     "pilotErrorCode": 0,
[2024-06-12 14:29:58]     "pilotErrorDiag": "",
[2024-06-12 14:29:58]  *** Listing of results directory ***
[2024-06-12 14:29:58] total 958904
[2024-06-12 14:29:58] -rw-r--r-- 1 boinc boinc    469443 Jun 11 02:29 pilot3.tar.gz
[2024-06-12 14:29:58] -rwx------ 1 boinc boinc     32308 Jun 11 03:02 runpilot2-wrapper.sh
[2024-06-12 14:29:58] -rw-r--r-- 1 boinc boinc      5654 Jun 11 03:02 queuedata.json
[2024-06-12 14:29:58] -rw-r--r-- 1 boinc boinc       100 Jun 12 07:12 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-12 14:29:58] -rwxr-xr-x 1 boinc boinc      7986 Jun 12 07:12 run_atlas
[2024-06-12 14:29:58] -rw-r--r-- 1 boinc boinc       105 Jun 12 07:12 job.xml
[2024-06-12 14:29:58] -rw-r--r-- 1 boinc boinc      6629 Jun 12 07:12 init_data.xml
[2024-06-12 14:29:58] -rw-r--r-- 2 boinc boinc 612736407 Jun 12 07:12 EVNT.38776190._000663.pool.root.1
[2024-06-12 14:29:58] -rw-r--r-- 2 boinc boinc     17537 Jun 12 07:12 start_atlas.sh
[2024-06-12 14:29:58] drwxrwx--x 2 boinc boinc      4096 Jun 12 07:12 shared
[2024-06-12 14:29:58] -rw-r--r-- 2 boinc boinc    482050 Jun 12 07:12 input.tar.gz
[2024-06-12 14:29:58] -rw-r--r-- 1 boinc boinc         0 Jun 12 07:12 boinc_lockfile
[2024-06-12 14:29:58] -rw-r--r-- 1 boinc boinc      2652 Jun 12 07:12 pandaJob.out
[2024-06-12 14:29:58] -rw------- 1 boinc boinc       424 Jun 12 07:12 setup.sh.local
[2024-06-12 14:29:58] -rw------- 1 boinc boinc   1025412 Jun 12 07:12 agis_schedconf.cvmfs.json
[2024-06-12 14:29:58] -rw------- 1 boinc boinc   1324173 Jun 12 07:12 cric_ddmendpoints.json
[2024-06-12 14:29:58] drwx------ 4 boinc boinc      4096 Jun 12 07:12 pilot3
[2024-06-12 14:29:58] -rw------- 1 boinc boinc 359746813 Jun 12 14:28 HITS.38921001._052541.pool.root.1
[2024-06-12 14:29:58] -rw-r--r-- 1 boinc boinc       532 Jun 12 14:28 boinc_task_state.xml
[2024-06-12 14:29:58] -rw-r--r-- 1 boinc boinc      8192 Jun 12 14:29 boinc_mmap_file
[2024-06-12 14:29:58] -rw-r--r-- 1 boinc boinc        28 Jun 12 14:29 wrapper_checkpoint.txt
[2024-06-12 14:29:58] -rw------- 1 boinc boinc      1072 Jun 12 14:29 memory_monitor_summary.json
[2024-06-12 14:29:58] -rw------- 1 boinc boinc        95 Jun 12 14:29 pilot_heartbeat.json
[2024-06-12 14:29:58] -rw------- 1 boinc boinc         0 Jun 12 14:29 agis_ddmendpoints.agis.ALL.json
[2024-06-12 14:29:58] -rw------- 1 boinc boinc    555284 Jun 12 14:29 log.38921001._052541.job.log.tgz.1
[2024-06-12 14:29:58] -rw------- 1 boinc boinc      7791 Jun 12 14:29 heartbeat.json
[2024-06-12 14:29:58] -rw------- 1 boinc boinc      4210 Jun 12 14:29 pilotlog.txt
[2024-06-12 14:29:58] -rw------- 1 boinc boinc   2391069 Jun 12 14:29 log.38921001._052541.job.log.1
[2024-06-12 14:29:58] -rw------- 1 boinc boinc       357 Jun 12 14:29 output.list
[2024-06-12 14:29:58] -rw-r--r-- 1 boinc boinc       620 Jun 12 14:29 runtime_log
[2024-06-12 14:29:58] -rw------- 1 boinc boinc   2969600 Jun 12 14:29 result.tar.gz
[2024-06-12 14:29:58] -rw------- 1 boinc boinc       659 Jun 12 14:29 sLlKDmmVDb5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDmggaKDmuF4VXm.diag
[2024-06-12 14:29:58] -rw-r--r-- 1 boinc boinc     11287 Jun 12 14:29 runtime_log.err
[2024-06-12 14:29:58] -rw-r--r-- 1 boinc boinc     21875 Jun 12 14:29 stderr.txt
[2024-06-12 14:29:58] HITS file was successfully produced:
[2024-06-12 14:29:58] -rw------- 1 boinc boinc 359746813 Jun 12 14:28 shared/HITS.pool.root.1
[2024-06-12 14:29:58]  *** Contents of shared directory: ***
[2024-06-12 14:29:58] total 953092
[2024-06-12 14:29:58] -rw-r--r-- 2 boinc boinc 612736407 Jun 12 07:12 ATLAS.root_0
[2024-06-12 14:29:58] -rw-r--r-- 2 boinc boinc     17537 Jun 12 07:12 start_atlas.sh
[2024-06-12 14:29:58] -rw-r--r-- 2 boinc boinc    482050 Jun 12 07:12 input.tar.gz
[2024-06-12 14:29:58] -rw------- 1 boinc boinc 359746813 Jun 12 14:28 HITS.pool.root.1
[2024-06-12 14:29:58] -rw------- 1 boinc boinc   2969600 Jun 12 14:29 result.tar.gz
14:30:00 (108938): run_atlas exited; CPU time 88036.550139
14:30:00 (108938): called boinc_finish(0)

</stderr_txt>
]]>

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