Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2024-06-12 12:16:46 (18428): Detected: vboxwrapper 26206
2024-06-12 12:16:46 (18428): Detected: BOINC client v7.24.1
2024-06-12 12:16:47 (18428): Detected: VirtualBox VboxManage Interface (Version: 6.1.46)
2024-06-12 12:16:48 (18428): Successfully copied 'init_data.xml' to the shared directory.
2024-06-12 12:16:48 (18428): Create VM. (boinc_ae1ddb2c96388e7c, slot#0)
2024-06-12 12:16:49 (18428): Setting Memory Size for VM. (4400MB)
2024-06-12 12:16:49 (18428): Setting CPU Count for VM. (4)
2024-06-12 12:16:49 (18428): Setting Chipset Options for VM.
2024-06-12 12:16:50 (18428): Setting Graphics Controller Options for VM.
2024-06-12 12:16:50 (18428): Setting Boot Options for VM.
2024-06-12 12:16:50 (18428): Setting Network Configuration for NAT.
2024-06-12 12:16:50 (18428): Enabling VM Network Access.
2024-06-12 12:16:51 (18428): Disabling USB Support for VM.
2024-06-12 12:16:51 (18428): Disabling COM Port Support for VM.
2024-06-12 12:16:51 (18428): Disabling LPT Port Support for VM.
2024-06-12 12:16:52 (18428): Disabling Audio Support for VM.
2024-06-12 12:16:52 (18428): Disabling Clipboard Support for VM.
2024-06-12 12:16:52 (18428): Disabling Drag and Drop Support for VM.
2024-06-12 12:16:52 (18428): Adding storage controller(s) to VM.
2024-06-12 12:16:53 (18428): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-06-12 12:16:53 (18428): Adding VirtualBox Guest Additions to VM.
2024-06-12 12:16:53 (18428): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-06-12 12:16:54 (18428): forwarding host port 54728 to guest port 80
2024-06-12 12:16:54 (18428): Enabling remote desktop for VM.
2024-06-12 12:16:54 (18428): Enabling shared directory for VM.
2024-06-12 12:16:55 (18428): Starting VM using VBoxManage interface. (boinc_ae1ddb2c96388e7c, slot#0)
2024-06-12 12:17:00 (18428): Successfully started VM. (PID = '19628')
2024-06-12 12:17:00 (18428): Reporting VM Process ID to BOINC.
2024-06-12 12:17:00 (18428): Guest Log: BIOS: VirtualBox 6.1.46
2024-06-12 12:17:00 (18428): Guest Log: CPUID EDX: 0x178bfbff
2024-06-12 12:17:00 (18428): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-06-12 12:17:00 (18428): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-06-12 12:17:00 (18428): VM state change detected. (old = 'poweredoff', new = 'running')
2024-06-12 12:17:00 (18428): Detected: Web Application Enabled (http://localhost:54728)
2024-06-12 12:17:00 (18428): Detected: Remote Desktop Enabled (localhost:54729)
2024-06-12 12:17:00 (18428): Preference change detected
2024-06-12 12:17:00 (18428): Setting CPU throttle for VM. (60%)
2024-06-12 12:17:00 (18428): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-06-12 12:17:02 (18428): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-06-12 12:17:02 (18428): Guest Log: BIOS: Booting from Hard Disk...
2024-06-12 12:17:06 (18428): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-06-12 12:17:06 (18428): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-06-12 12:17:06 (18428): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-06-12 12:17:06 (18428): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-06-12 12:17:06 (18428): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-06-12 12:17:06 (18428): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-06-12 12:17:06 (18428): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-06-12 12:17:06 (18428): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-06-12 12:17:06 (18428): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-06-12 12:17:06 (18428): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-06-12 12:17:06 (18428): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-06-12 12:17:06 (18428): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-06-12 12:17:06 (18428): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-06-12 12:17:06 (18428): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-06-12 12:17:06 (18428): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-06-12 12:17:06 (18428): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-06-12 12:17:06 (18428): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-06-12 12:17:06 (18428): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-06-12 12:17:06 (18428): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-06-12 12:17:06 (18428): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-06-12 12:17:06 (18428): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-06-12 12:17:06 (18428): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-06-12 12:17:06 (18428): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-06-12 12:17:06 (18428): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-06-12 12:17:06 (18428): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-06-12 12:17:06 (18428): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-06-12 12:17:06 (18428): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-06-12 12:17:06 (18428): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-06-12 12:17:06 (18428): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-06-12 12:17:06 (18428): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-06-12 12:17:06 (18428): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-06-12 12:17:06 (18428): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-06-12 12:17:13 (18428): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-06-12 12:17:13 (18428): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-06-12 12:17:23 (18428): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-06-12 12:17:23 (18428): Guest Log: 00:00:00.000166 main     Log opened 2024-06-12T12:17:21.895585000Z
2024-06-12 12:17:23 (18428): Guest Log: 00:00:00.000268 main     OS Product: Linux
2024-06-12 12:17:23 (18428): Guest Log: 00:00:00.000315 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-06-12 12:17:23 (18428): Guest Log: 00:00:00.000337 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-06-12 12:17:23 (18428): Guest Log: 00:00:00.000371 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-06-12 12:17:23 (18428): Guest Log: 00:00:00.000371 main     Process ID: 1238
2024-06-12 12:17:23 (18428): Guest Log: 00:00:00.000372 main     Package type: LINUX_64BITS_GENERIC
2024-06-12 12:17:23 (18428): Guest Log: 00:00:00.001189 main     5.2.32 r132073 started. Verbose level = 0
2024-06-12 12:17:23 (18428): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-06-12 12:17:23 (18428): Guest Log: [INFO] Mounting shared directory
2024-06-12 12:17:23 (18428): Guest Log: [INFO] Checking for init_data.xml
2024-06-12 12:17:26 (18428): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-06-12 12:17:26 (18428): Guest Log: [INFO] Detected branch: prod
2024-06-12 12:17:26 (18428): Guest Log: This is the prod version of the ATLAS job wrapper
2024-06-12 12:17:26 (18428): Guest Log: Copying input files
2024-06-12 12:17:33 (18428): Guest Log: 00:00:10.007611 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 975 022 000ns (GuestNow=1 718 187 452 923 482 000 ns GuestLast=1 718 194 641 898 504 000 ns fSetTimeLastLoop=true )
2024-06-12 12:17:33 (18428): Guest Log: Copied input files into RunAtlas.
2024-06-12 12:17:33 (18428): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-06-12 12:17:33 (18428): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-06-12 12:17:33 (18428): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-06-12 12:17:33 (18428): Guest Log: Further information can be found at the LHC@home message board.
2024-06-12 12:17:42 (18428): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-06-12 12:17:43 (18428): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-06-12 12:17:43 (18428): Guest Log: 2.6.3.0 1515 0 30332 133787 4 1 3119736 4096000 0 65024 0 0 n/a 1141 1083 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-06-12 12:17:44 (18428): Guest Log: copied the webapp to /var/www
2024-06-12 12:17:44 (18428): Guest Log: ATHENA_PROC_NUMBER=4
2024-06-12 12:17:44 (18428): Guest Log: ATHENA_CORE_NUMBER=4
2024-06-12 12:17:44 (18428): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-06-12 12:17:44 (18428): Guest Log:  *** Starting ATLAS job. (PandaID=6227184349 taskID=38921007) ***
2024-06-12 13:57:07 (18428): Status Report: Elapsed Time: '6000.000000'
2024-06-12 13:57:07 (18428): Status Report: CPU Time: '11977.578125'
2024-06-12 15:37:13 (18428): Status Report: Elapsed Time: '12000.000000'
2024-06-12 15:37:13 (18428): Status Report: CPU Time: '26387.031250'
2024-06-12 17:17:19 (18428): Status Report: Elapsed Time: '18000.000000'
2024-06-12 17:17:19 (18428): Status Report: CPU Time: '40782.968750'
2024-06-12 18:57:25 (18428): Status Report: Elapsed Time: '24000.000000'
2024-06-12 18:57:25 (18428): Status Report: CPU Time: '55181.250000'
2024-06-12 20:37:31 (18428): Status Report: Elapsed Time: '30000.000000'
2024-06-12 20:37:31 (18428): Status Report: CPU Time: '69585.265625'
2024-06-12 22:17:38 (18428): Status Report: Elapsed Time: '36000.000000'
2024-06-12 22:17:38 (18428): Status Report: CPU Time: '84003.750000'
2024-06-12 22:56:49 (18428): Guest Log:  *** Job finished ***
2024-06-12 22:56:49 (18428): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-06-12 22:56:49 (18428): Guest Log: 2024-06-12 20:56:35,331 | INFO     | [data] queue_monitor thread has finished
2024-06-12 22:56:49 (18428): Guest Log: 2024-06-12 20:56:40,261 | INFO     | job.realtimelogging is not enabled
2024-06-12 22:56:49 (18428): Guest Log: 2024-06-12 20:56:41,264 | INFO     | [payload] run_realtimelog thread has finished
2024-06-12 22:56:49 (18428): Guest Log: 2024-06-12 20:56:41,426 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139937533536064)>', '<ExcThread(monitor, started 139936711816960)>']
2024-06-12 22:56:49 (18428): Guest Log: 2024-06-12 20:56:42,265 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-06-12 22:56:49 (18428): Guest Log: 2024-06-12 20:56:42,266 | INFO     | [monitor] control thread has ended
2024-06-12 22:56:49 (18428): Guest Log: 2024-06-12 20:56:46,480 | INFO     | all workflow threads have been joined
2024-06-12 22:56:49 (18428): Guest Log: 2024-06-12 20:56:46,480 | INFO     | end of generic workflow (traces error code: 0)
2024-06-12 22:56:49 (18428): Guest Log: 2024-06-12 20:56:46,480 | INFO     | traces error code: 0
2024-06-12 22:56:49 (18428): Guest Log: 2024-06-12 20:56:46,480 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-06-12 22:56:49 (18428): Guest Log: 2024-06-12 20:56:46,545 [wrapper] ==== pilot stdout END ====
2024-06-12 22:56:49 (18428): Guest Log: 2024-06-12 20:56:46,548 [wrapper] ==== wrapper stdout RESUME ====
2024-06-12 22:56:49 (18428): Guest Log: 2024-06-12 20:56:46,553 [wrapper] pilotpid: 6393
2024-06-12 22:56:49 (18428): Guest Log: 2024-06-12 20:56:46,557 [wrapper] Pilot exit status: 0
2024-06-12 22:56:49 (18428): Guest Log: 2024-06-12 20:56:46,654 [wrapper] pandaids: 6227184349
2024-06-12 22:56:49 (18428): Guest Log: 2024-06-12 20:56:46,682 [wrapper] cleanup supervisor_pilot  9018 6394
2024-06-12 22:56:49 (18428): Guest Log: 2024-06-12 20:56:46,687 [wrapper] Test setup, not cleaning
2024-06-12 22:56:49 (18428): Guest Log: 2024-06-12 20:56:46,691 [wrapper] ==== wrapper stdout END ====
2024-06-12 22:56:49 (18428): Guest Log: 2024-06-12 20:56:46,695 [wrapper] ==== wrapper stderr END ====
2024-06-12 22:56:49 (18428): Guest Log: 2024-06-12 20:56:46,702 [wrapper] apfmon messages muted
2024-06-12 22:56:49 (18428): Guest Log:  *** Error codes and diagnostics ***
2024-06-12 22:56:49 (18428): Guest Log:     "exeErrorCode": 0,
2024-06-12 22:56:49 (18428): Guest Log:     "exeErrorDiag": "",
2024-06-12 22:56:49 (18428): Guest Log:     "pilotErrorCode": 0,
2024-06-12 22:56:49 (18428): Guest Log:     "pilotErrorDiag": "",
2024-06-12 22:56:49 (18428): Guest Log:  *** Listing of results directory ***
2024-06-12 22:56:49 (18428): Guest Log: total 358704
2024-06-12 22:56:49 (18428): Guest Log: -rw-r--r--. 1 atlas atlas    469443 Jun 11 09:29 pilot3.tar.gz
2024-06-12 22:56:49 (18428): Guest Log: -rw-r--r--. 1 atlas atlas      5654 Jun 11 09:57 queuedata.json
2024-06-12 22:56:49 (18428): Guest Log: -rwx------. 1 atlas atlas     32308 Jun 11 09:59 runpilot2-wrapper.sh
2024-06-12 22:56:49 (18428): Guest Log: -rwxr-xr-x. 1 atlas atlas      9167 Jun 12 10:17 init_data.xml
2024-06-12 22:56:49 (18428): Guest Log: -rwxr-xr-x. 1 atlas atlas    482028 Jun 12 10:17 input.tar.gz
2024-06-12 22:56:49 (18428): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 Jun 12 10:17 start_atlas.sh
2024-06-12 22:56:49 (18428): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun 12 10:17 EVNT.38776201._000793.pool.root.1 -> /data/./ATLAS.root_0
2024-06-12 22:56:49 (18428): Guest Log: -rw-r--r--. 1 atlas atlas      2631 Jun 12 10:17 pandaJob.out
2024-06-12 22:56:49 (18428): Guest Log: -rw-------. 1 atlas atlas       424 Jun 12 10:18 setup.sh.local
2024-06-12 22:56:49 (18428): Guest Log: -rw-------. 1 atlas atlas   1026188 Jun 12 10:19 agis_schedconf.cvmfs.json
2024-06-12 22:56:49 (18428): Guest Log: -rw-------. 1 atlas atlas   1324173 Jun 12 10:19 cric_ddmendpoints.json
2024-06-12 22:56:49 (18428): Guest Log: drwx------. 4 atlas atlas      4096 Jun 12 10:19 pilot3
2024-06-12 22:56:49 (18428): Guest Log: -rw-------. 1 atlas atlas 357790910 Jun 12 20:55 HITS.38921007._032197.pool.root.1
2024-06-12 22:56:49 (18428): Guest Log: -rw-------. 1 atlas atlas      1025 Jun 12 20:56 memory_monitor_summary.json
2024-06-12 22:56:49 (18428): Guest Log: -rw-------. 1 atlas atlas         0 Jun 12 20:56 agis_ddmendpoints.agis.ALL.json
2024-06-12 22:56:49 (18428): Guest Log: -rw-------. 1 atlas atlas    450109 Jun 12 20:56 log.38921007._032197.job.log.tgz.1
2024-06-12 22:56:49 (18428): Guest Log: -rw-------. 1 atlas atlas      7702 Jun 12 20:56 heartbeat.json
2024-06-12 22:56:49 (18428): Guest Log: -rw-------. 1 atlas atlas        95 Jun 12 20:56 pilot_heartbeat.json
2024-06-12 22:56:49 (18428): Guest Log: -rw-------. 1 atlas atlas      4529 Jun 12 20:56 pilotlog.txt
2024-06-12 22:56:49 (18428): Guest Log: -rw-------. 1 atlas atlas   2572999 Jun 12 20:56 log.38921007._032197.job.log.1
2024-06-12 22:56:49 (18428): Guest Log: -rw-------. 1 atlas atlas       357 Jun 12 20:56 output.list
2024-06-12 22:56:49 (18428): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun 12 20:56 runtime_log
2024-06-12 22:56:49 (18428): Guest Log: -rw-------. 1 atlas atlas   3041280 Jun 12 20:56 result.tar.gz
2024-06-12 22:56:49 (18428): Guest Log: -rw-r--r--. 1 atlas atlas     10913 Jun 12 20:56 runtime_log.err
2024-06-12 22:56:49 (18428): Guest Log: -rw-------. 1 atlas atlas       644 Jun 12 20:56 faFODmhSDb5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDmXgaKDmSu5ILm.diag
2024-06-12 22:56:49 (18428): Guest Log: Looking for outputfile HITS.38921007._032197.pool.root.1
2024-06-12 22:56:49 (18428): Guest Log: HITS file was successfully produced
2024-06-12 22:56:49 (18428): Guest Log: -rw-------. 1 atlas atlas 357790910 Jun 12 20:55 /home/atlas/RunAtlas/HITS.38921007._032197.pool.root.1
2024-06-12 22:56:52 (18428): Guest Log: Successfully finished the ATLAS job!
2024-06-12 22:56:52 (18428): Guest Log: Copying the results back to the shared directory!
2024-06-12 22:56:52 (18428): Guest Log:  *** Contents of shared directory: ***
2024-06-12 22:56:52 (18428): Guest Log: total 923744
2024-06-12 22:56:52 (18428): Guest Log: -rwxrwxrwx. 1 root root 584560511 Jun 12 10:16 ATLAS.root_0
2024-06-12 22:56:52 (18428): Guest Log: -rwxrwxrwx. 1 root root 357790910 Jun 12 20:56 HITS.pool.root.1
2024-06-12 22:56:52 (18428): Guest Log: -rwxrwxrwx. 1 root root      9167 Jun 12 10:16 init_data.xml
2024-06-12 22:56:52 (18428): Guest Log: -rwxrwxrwx. 1 root root    482028 Jun 11 14:45 input.tar.gz
2024-06-12 22:56:52 (18428): Guest Log: -rwxrwxrwx. 1 root root   3041280 Jun 12 20:56 result.tar.gz
2024-06-12 22:56:52 (18428): Guest Log: -rwxrwxrwx. 1 root root     17537 Jun 11 14:45 start_atlas.sh
2024-06-12 22:56:52 (18428): Guest Log:  *** Success! Shutting down the machine. ***
2024-06-12 22:56:52 (18428): VM Completion File Detected.
2024-06-12 22:56:52 (18428): Powering off VM.
2024-06-12 22:56:53 (18428): Successfully stopped VM.
2024-06-12 22:56:53 (18428): Deregistering VM. (boinc_ae1ddb2c96388e7c, slot#0)
2024-06-12 22:56:53 (18428): Removing network bandwidth throttle group from VM.
2024-06-12 22:56:53 (18428): Removing VM from VirtualBox.
22:56:58 (18428): called boinc_finish(0)

</stderr_txt>
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