Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:27:36 (2844895): wrapper (7.7.26015): starting
09:27:36 (2844895): wrapper: running run_atlas (--nthreads 4)
[2024-06-13 09:27:36] Arguments: --nthreads 4
[2024-06-13 09:27:36] Threads: 4
[2024-06-13 09:27:36] Checking for CVMFS
[2024-06-13 09:27:36] No cvmfs_config command found, will try listing directly
[2024-06-13 09:27:36] CVMFS is ok
[2024-06-13 09:27:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-13 09:27:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-13 09:27:36] Further information can be found at the LHC@home message board.
[2024-06-13 09:27:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-13 09:27:36] Checking for apptainer binary...
[2024-06-13 09:27:36] which: no apptainer in ((null))
[2024-06-13 09:27:36] apptainer is not installed, using version from CVMFS
[2024-06-13 09:27:36] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-13 09:27:37] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot64/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut07.grid.cesnet.cz
[2024-06-13 09:27:37] apptainer works
[2024-06-13 09:27:37] Set ATHENA_PROC_NUMBER=4
[2024-06-13 09:27:37] Set ATHENA_CORE_NUMBER=4
[2024-06-13 09:27:37] Starting ATLAS job with PandaID=6227118165
[2024-06-13 09:27:37] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot64/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-13 15:41:21]  *** The last 200 lines of the pilot log: ***
[2024-06-13 15:41:21] 2024-06-13 13:41:06,507 | INFO     | intersect: -18511048057.58452
[2024-06-13 15:41:21] 2024-06-13 13:41:06,508 | INFO     | chi2: 4.02123982052123
[2024-06-13 15:41:21] 2024-06-13 13:41:06,508 | INFO     | model: linear, x: [1718263688.0, 1718263749.0, 1718263810.0, 1718263871.0, 1718263932.0, 1718263993.0, 1718264054.0, 1718264115.0, 1718264176.0, 1718264237.0, 1718
[2024-06-13 15:41:21] 2024-06-13 13:41:06,508 | INFO     | sum of square deviations: 14709598590.5
[2024-06-13 15:41:21] 2024-06-13 13:41:06,510 | INFO     | sum of deviations: 162730978041.49997
[2024-06-13 15:41:21] 2024-06-13 13:41:06,510 | INFO     | mean x: 1718274698.5
[2024-06-13 15:41:21] 2024-06-13 13:41:06,510 | INFO     | mean y: 2324671.8038674034
[2024-06-13 15:41:21] 2024-06-13 13:41:06,510 | INFO     | -- intersect: -19006795156.35073
[2024-06-13 15:41:21] 2024-06-13 13:41:06,510 | INFO     | intersect: -19006795156.35073
[2024-06-13 15:41:21] 2024-06-13 13:41:06,511 | INFO     | chi2: 4.022024131531372
[2024-06-13 15:41:21] 2024-06-13 13:41:06,511 | INFO     | current chi2=4.022024131531372 (change=-0.019504208780064116 %)
[2024-06-13 15:41:21] 2024-06-13 13:41:06,511 | INFO     | right removable region: 361
[2024-06-13 15:41:21] 2024-06-13 13:41:06,511 | INFO     | model: linear, x: [1718263993.0, 1718264054.0, 1718264115.0, 1718264176.0, 1718264237.0, 1718264298.0, 1718264359.0, 1718264420.0, 1718264481.0, 1718264542.0, 1718
[2024-06-13 15:41:21] 2024-06-13 13:41:06,511 | INFO     | sum of square deviations: 14709598590.5
[2024-06-13 15:41:21] 2024-06-13 13:41:06,513 | INFO     | sum of deviations: 79202875037.49997
[2024-06-13 15:41:21] 2024-06-13 13:41:06,513 | INFO     | mean x: 1718275003.5
[2024-06-13 15:41:21] 2024-06-13 13:41:06,513 | INFO     | mean y: 2346442.5220994474
[2024-06-13 15:41:21] 2024-06-13 13:41:06,513 | INFO     | -- intersect: -9249593339.856718
[2024-06-13 15:41:21] 2024-06-13 13:41:06,513 | INFO     | intersect: -9249593339.856718
[2024-06-13 15:41:21] 2024-06-13 13:41:06,514 | INFO     | chi2: 1.5880988720439155
[2024-06-13 15:41:21] 2024-06-13 13:41:06,514 | INFO     | current chi2=1.5880988720439155 (change=60.50723301954004 %)
[2024-06-13 15:41:21] 2024-06-13 13:41:06,514 | INFO     | model: linear, x: [1718264298.0, 1718264359.0, 1718264420.0, 1718264481.0, 1718264542.0, 1718264603.0, 1718264664.0, 1718264725.0, 1718264786.0, 1718264847.0, 1718
[2024-06-13 15:41:21] 2024-06-13 13:41:06,514 | INFO     | sum of square deviations: 14108461738.0
[2024-06-13 15:41:21] 2024-06-13 13:41:06,517 | INFO     | sum of deviations: 8564323139.999999
[2024-06-13 15:41:21] 2024-06-13 13:41:06,517 | INFO     | mean x: 1718275156.0
[2024-06-13 15:41:21] 2024-06-13 13:41:06,517 | INFO     | mean y: 2364362.845938375
[2024-06-13 15:41:21] 2024-06-13 13:41:06,517 | INFO     | -- intersect: -1040687952.3318334
[2024-06-13 15:41:21] 2024-06-13 13:41:06,517 | INFO     | intersect: -1040687952.3318334
[2024-06-13 15:41:21] 2024-06-13 13:41:06,517 | INFO     | chi2: 0.08009618076600869
[2024-06-13 15:41:21] 2024-06-13 13:41:06,517 | INFO     | current chi2=0.08009618076600869 (change=94.95647392136716 %)
[2024-06-13 15:41:21] 2024-06-13 13:41:06,518 | INFO     | model: linear, x: [1718264603.0, 1718264664.0, 1718264725.0, 1718264786.0, 1718264847.0, 1718264908.0, 1718264969.0, 1718265030.0, 1718265091.0, 1718265152.0, 1718
[2024-06-13 15:41:21] 2024-06-13 13:41:06,518 | INFO     | sum of square deviations: 13523929848.0
[2024-06-13 15:41:21] 2024-06-13 13:41:06,520 | INFO     | sum of deviations: -3569031859.0000014
[2024-06-13 15:41:21] 2024-06-13 13:41:06,520 | INFO     | mean x: 1718275308.5
[2024-06-13 15:41:21] 2024-06-13 13:41:06,520 | INFO     | mean y: 2367517.710227273
[2024-06-13 15:41:21] 2024-06-13 13:41:06,520 | INFO     | -- intersect: 455828855.3166537
[2024-06-13 15:41:21] 2024-06-13 13:41:06,520 | INFO     | intersect: 455828855.3166537
[2024-06-13 15:41:21] 2024-06-13 13:41:06,520 | INFO     | chi2: 0.019696603576227524
[2024-06-13 15:41:21] 2024-06-13 13:41:06,521 | INFO     | current chi2=0.019696603576227524 (change=75.40881052272795 %)
[2024-06-13 15:41:21] 2024-06-13 13:41:06,521 | INFO     | model: linear, x: [1718264908.0, 1718264969.0, 1718265030.0, 1718265091.0, 1718265152.0, 1718265213.0, 1718265274.0, 1718265335.0, 1718265396.0, 1718265457.0, 1718
[2024-06-13 15:41:21] 2024-06-13 13:41:06,521 | INFO     | sum of square deviations: 12955770358.0
[2024-06-13 15:41:21] 2024-06-13 13:41:06,523 | INFO     | sum of deviations: -3538811543.999996
[2024-06-13 15:41:21] 2024-06-13 13:41:06,523 | INFO     | mean x: 1718275461.0
[2024-06-13 15:41:21] 2024-06-13 13:41:06,523 | INFO     | mean y: 2367507.939481268
[2024-06-13 15:41:21] 2024-06-13 13:41:06,523 | INFO     | -- intersect: 471706873.26745653
[2024-06-13 15:41:21] 2024-06-13 13:41:06,523 | INFO     | intersect: 471706873.26745653
[2024-06-13 15:41:21] 2024-06-13 13:41:06,523 | INFO     | chi2: 0.0194977882425771
[2024-06-13 15:41:21] 2024-06-13 13:41:06,523 | INFO     | current chi2=0.0194977882425771 (change=1.0093889176425397 %)
[2024-06-13 15:41:21] 2024-06-13 13:41:06,524 | INFO     | left removable region: 40
[2024-06-13 15:41:21] 2024-06-13 13:41:06,524 | INFO     | model: linear, x: [1718266128.0, 1718266189.0, 1718266250.0, 1718266311.0, 1718266372.0, 1718266433.0, 1718266494.0, 1718266555.0, 1718266616.0, 1718266677.0, 1718
[2024-06-13 15:41:21] 2024-06-13 13:41:06,524 | INFO     | sum of square deviations: 10256266720.0
[2024-06-13 15:41:21] 2024-06-13 13:41:06,525 | INFO     | sum of deviations: 5950280074.999999
[2024-06-13 15:41:21] 2024-06-13 13:41:06,526 | INFO     | mean x: 1718275888.0
[2024-06-13 15:41:21] 2024-06-13 13:41:06,526 | INFO     | mean y: 2364601.152647975
[2024-06-13 15:41:21] 2024-06-13 13:41:06,526 | INFO     | -- intersect: -994511070.9456425
[2024-06-13 15:41:21] 2024-06-13 13:41:06,526 | INFO     | intersect: -994511070.9456425
[2024-06-13 15:41:21] 2024-06-13 13:41:06,526 | INFO     | chi2: 0.01011845908229431
[2024-06-13 15:41:21] 2024-06-13 13:41:06,526 | INFO     | -- intersect: -994511070.9456425
[2024-06-13 15:41:21] 2024-06-13 13:41:06,526 | INFO     | current memory leak: 0.58 B/s (using 321 data points, chi2=0.01)
[2024-06-13 15:41:21] 2024-06-13 13:41:06,527 | INFO     | ..............................
[2024-06-13 15:41:21] 2024-06-13 13:41:06,527 | INFO     | . Timing measurements:
[2024-06-13 15:41:21] 2024-06-13 13:41:06,527 | INFO     | . get job = 0 s
[2024-06-13 15:41:21] 2024-06-13 13:41:06,527 | INFO     | . initial setup = 1 s
[2024-06-13 15:41:21] 2024-06-13 13:41:06,527 | INFO     | . payload setup = 4 s
[2024-06-13 15:41:21] 2024-06-13 13:41:06,527 | INFO     | . stage-in = 0 s
[2024-06-13 15:41:21] 2024-06-13 13:41:06,527 | INFO     | . payload execution = 22371 s
[2024-06-13 15:41:21] 2024-06-13 13:41:06,527 | INFO     | . stage-out = 1 s
[2024-06-13 15:41:21] 2024-06-13 13:41:06,527 | INFO     | . log creation = 0 s
[2024-06-13 15:41:21] 2024-06-13 13:41:06,527 | INFO     | ..............................
[2024-06-13 15:41:21] 2024-06-13 13:41:06,584 | INFO     | 
[2024-06-13 15:41:21] 2024-06-13 13:41:06,584 | INFO     | job summary report
[2024-06-13 15:41:21] 2024-06-13 13:41:06,584 | INFO     | --------------------------------------------------
[2024-06-13 15:41:21] 2024-06-13 13:41:06,584 | INFO     | PanDA job id: 6227118165
[2024-06-13 15:41:21] 2024-06-13 13:41:06,584 | INFO     | task id: 38920987
[2024-06-13 15:41:21] 2024-06-13 13:41:06,584 | INFO     | errors: (none)
[2024-06-13 15:41:21] 2024-06-13 13:41:06,584 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-13 15:41:21] 2024-06-13 13:41:06,584 | INFO     | pilot state: finished 
[2024-06-13 15:41:21] 2024-06-13 13:41:06,584 | INFO     | transexitcode: 0
[2024-06-13 15:41:21] 2024-06-13 13:41:06,584 | INFO     | exeerrorcode: 0
[2024-06-13 15:41:21] 2024-06-13 13:41:06,584 | INFO     | exeerrordiag: 
[2024-06-13 15:41:21] 2024-06-13 13:41:06,584 | INFO     | exitcode: 0
[2024-06-13 15:41:21] 2024-06-13 13:41:06,584 | INFO     | exitmsg: OK
[2024-06-13 15:41:21] 2024-06-13 13:41:06,584 | INFO     | cpuconsumptiontime: 86563 s
[2024-06-13 15:41:21] 2024-06-13 13:41:06,584 | INFO     | nevents: 400
[2024-06-13 15:41:21] 2024-06-13 13:41:06,584 | INFO     | neventsw: 0
[2024-06-13 15:41:21] 2024-06-13 13:41:06,584 | INFO     | pid: 2856251
[2024-06-13 15:41:21] 2024-06-13 13:41:06,584 | INFO     | pgrp: 2856251
[2024-06-13 15:41:21] 2024-06-13 13:41:06,585 | INFO     | corecount: 4
[2024-06-13 15:41:21] 2024-06-13 13:41:06,585 | INFO     | event service: False
[2024-06-13 15:41:21] 2024-06-13 13:41:06,585 | INFO     | sizes: {0: 2393249, 1: 2393420, 4: 2393654, 11: 2393682, 22379: 2428115, 22380: 2428114, 22381: 2437280, 22384: 2437336, 22387: 2437506}
[2024-06-13 15:41:21] 2024-06-13 13:41:06,585 | INFO     | --------------------------------------------------
[2024-06-13 15:41:21] 2024-06-13 13:41:06,585 | INFO     | 
[2024-06-13 15:41:21] 2024-06-13 13:41:06,585 | INFO     | executing command: ls -lF /scratch/boinc/var/slot64/slots/0
[2024-06-13 15:41:21] 2024-06-13 13:41:06,602 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-13 15:41:21] 2024-06-13 13:41:06,602 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-13 15:41:21] 2024-06-13 13:41:06,603 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-13 15:41:21] 2024-06-13 13:41:06,603 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-13 15:41:21] 2024-06-13 13:41:06,603 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-13 15:41:21] 2024-06-13 13:41:06,603 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-13 15:41:21] 2024-06-13 13:41:06,603 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-13 15:41:21] 2024-06-13 13:41:06,603 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-13 15:41:21] 2024-06-13 13:41:06,603 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-13 15:41:21] 2024-06-13 13:41:06,603 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-13 15:41:21] 2024-06-13 13:41:06,603 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-13 15:41:21] 2024-06-13 13:41:06,603 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-13 15:41:21] 2024-06-13 13:41:06,603 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-13 15:41:21] 2024-06-13 13:41:06,603 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-13 15:41:21] 2024-06-13 13:41:06,603 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-13 15:41:21] 2024-06-13 13:41:06,603 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-13 15:41:21] 2024-06-13 13:41:06,603 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-13 15:41:21] 2024-06-13 13:41:06,603 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-13 15:41:21] 2024-06-13 13:41:06,603 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-13 15:41:21] 2024-06-13 13:41:06,603 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-13 15:41:21] 2024-06-13 13:41:06,604 | INFO     | job 6227118165 has completed (purged errors)
[2024-06-13 15:41:21] 2024-06-13 13:41:06,604 | INFO     | overall cleanup function is called
[2024-06-13 15:41:21] 2024-06-13 13:41:07,611 | INFO     | --- collectZombieJob: --- 10, [2856251]
[2024-06-13 15:41:21] 2024-06-13 13:41:07,611 | INFO     | zombie collector waiting for pid 2856251
[2024-06-13 15:41:21] 2024-06-13 13:41:07,611 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-13 15:41:21] 2024-06-13 13:41:08,616 | INFO     | collected zombie processes
[2024-06-13 15:41:21] 2024-06-13 13:41:08,616 | INFO     | will now attempt to kill all subprocesses of pid=2856251
[2024-06-13 15:41:21] 2024-06-13 13:41:08,763 | INFO     | process IDs to be killed: [2856251] (in reverse order)
[2024-06-13 15:41:21] 2024-06-13 13:41:08,866 | WARNING  | found no corresponding commands to process id(s)
[2024-06-13 15:41:21] 2024-06-13 13:41:08,867 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-13 15:41:21] 2024-06-13 13:41:08,874 | INFO     | did not find any defunct processes belonging to 2856251
[2024-06-13 15:41:21] 2024-06-13 13:41:08,881 | INFO     | did not find any defunct processes belonging to 2856251
[2024-06-13 15:41:21] 2024-06-13 13:41:08,881 | INFO     | ready for new job
[2024-06-13 15:41:21] 2024-06-13 13:41:08,881 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-13 15:41:21] 2024-06-13 13:41:08,883 | INFO     | *************************************
[2024-06-13 15:41:21] 2024-06-13 13:41:08,883 | INFO     | ***  PanDA Pilot version 3.7.6.8  ***
[2024-06-13 15:41:21] 2024-06-13 13:41:08,883 | INFO     | *************************************
[2024-06-13 15:41:21] 2024-06-13 13:41:08,883 | INFO     | 
[2024-06-13 15:41:21] 2024-06-13 13:41:08,886 | INFO     | architecture information:
[2024-06-13 15:41:21] 2024-06-13 13:41:08,887 | INFO     | executing command: cat /etc/os-release
[2024-06-13 15:41:21] 2024-06-13 13:41:08,904 | INFO     | cat /etc/os-release:
[2024-06-13 15:41:21] NAME="CentOS Linux"
[2024-06-13 15:41:21] VERSION="7 (Core)"
[2024-06-13 15:41:21] ID="centos"
[2024-06-13 15:41:21] ID_LIKE="rhel fedora"
[2024-06-13 15:41:21] VERSION_ID="7"
[2024-06-13 15:41:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-13 15:41:21] ANSI_COLOR="0;31"
[2024-06-13 15:41:21] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-13 15:41:21] HOME_URL="https://www.centos.org/"
[2024-06-13 15:41:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-13 15:41:21] 
[2024-06-13 15:41:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-13 15:41:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-13 15:41:21] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-13 15:41:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-13 15:41:21] 
[2024-06-13 15:41:21] 2024-06-13 13:41:08,904 | INFO     | *************************************
[2024-06-13 15:41:21] 2024-06-13 13:41:09,407 | INFO     | executing command: df -mP /scratch/boinc/var/slot64/slots/0
[2024-06-13 15:41:21] 2024-06-13 13:41:09,426 | INFO     | sufficient remaining disk space (627548618752 B)
[2024-06-13 15:41:21] 2024-06-13 13:41:09,427 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-13 15:41:21] 2024-06-13 13:41:09,427 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-13 15:41:21] 2024-06-13 13:41:09,427 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-06-13 15:41:21] 2024-06-13 13:41:09,428 | INFO     | found 0 job(s) in 20 queues
[2024-06-13 15:41:21] 2024-06-13 13:41:09,427 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-13 15:41:21] 2024-06-13 13:41:09,428 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-13 15:41:21] 2024-06-13 13:41:09,427 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-13 15:41:21] 2024-06-13 13:41:09,428 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-13 15:41:21] 2024-06-13 13:41:09,428 | INFO     | aborting loop
[2024-06-13 15:41:21] 2024-06-13 13:41:09,670 | INFO     | all data control threads have been joined
[2024-06-13 15:41:21] 2024-06-13 13:41:10,425 | INFO     | all payload control threads have been joined
[2024-06-13 15:41:21] 2024-06-13 13:41:10,432 | INFO     | [job] retrieve thread has finished
[2024-06-13 15:41:21] 2024-06-13 13:41:10,434 | INFO     | [job] job monitor thread has finished
[2024-06-13 15:41:21] 2024-06-13 13:41:10,456 | INFO     | [data] copytool_in thread has finished
[2024-06-13 15:41:21] 2024-06-13 13:41:10,560 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-13 15:41:21] 2024-06-13 13:41:10,576 | INFO     | [job] validate thread has finished
[2024-06-13 15:41:21] 2024-06-13 13:41:10,671 | INFO     | [payload] failed_post thread has finished
[2024-06-13 15:41:21] 2024-06-13 13:41:10,675 | INFO     | [data] control thread has finished
[2024-06-13 15:41:21] 2024-06-13 13:41:10,677 | INFO     | [job] create_data_payload thread has finished
[2024-06-13 15:41:21] 2024-06-13 13:41:11,061 | INFO     | all job control threads have been joined
[2024-06-13 15:41:21] 2024-06-13 13:41:11,209 | INFO     | [payload] validate_post thread has finished
[2024-06-13 15:41:21] 2024-06-13 13:41:11,212 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-13 15:41:21] 2024-06-13 13:41:11,430 | INFO     | [payload] control thread has finished
[2024-06-13 15:41:21] 2024-06-13 13:41:11,515 | INFO     | [payload] validate_pre thread has finished
[2024-06-13 15:41:21] 2024-06-13 13:41:11,593 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-13 15:41:21] 2024-06-13 13:41:11,614 | INFO     | [payload] execute_payloads thread has finished
[2024-06-13 15:41:21] 2024-06-13 13:41:12,066 | INFO     | [job] control thread has finished
[2024-06-13 15:41:21] 2024-06-13 13:41:12,566 | INFO     | [data] copytool_out thread has finished
[2024-06-13 15:41:21] 2024-06-13 13:41:12,598 | INFO     | [job] queue monitor thread has finished
[2024-06-13 15:41:21] 2024-06-13 13:41:13,434 | INFO     | [data] queue_monitor thread has finished
[2024-06-13 15:41:21] 2024-06-13 13:41:15,414 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47285155353664)>', '<ExcThread(monitor, started 47285326604032)>']
[2024-06-13 15:41:21] 2024-06-13 13:41:15,458 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-13 15:41:21] 2024-06-13 13:41:15,458 | INFO     | [monitor] control thread has ended
[2024-06-13 15:41:21] 2024-06-13 13:41:20,439 | INFO     | all workflow threads have been joined
[2024-06-13 15:41:21] 2024-06-13 13:41:20,439 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-13 15:41:21] 2024-06-13 13:41:20,439 | INFO     | traces error code: 0
[2024-06-13 15:41:21] 2024-06-13 13:41:20,439 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-13 15:41:21] 2024-06-13 13:41:20,521 [wrapper] ==== pilot stdout END ====
[2024-06-13 15:41:21] 2024-06-13 13:41:20,524 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-13 15:41:21] 2024-06-13 13:41:20,525 [wrapper] pilotpid: 2849230
[2024-06-13 15:41:21] 2024-06-13 13:41:20,527 [wrapper] Pilot exit status: 0
[2024-06-13 15:41:21] 2024-06-13 13:41:20,535 [wrapper] pandaids: 6227118165
[2024-06-13 15:41:21] 2024-06-13 13:41:20,598 [wrapper] cleanup supervisor_pilot 3672678 2849231
[2024-06-13 15:41:21] 2024-06-13 13:41:20,601 [wrapper] Test setup, not cleaning
[2024-06-13 15:41:21] 2024-06-13 13:41:20,602 [wrapper] ==== wrapper stdout END ====
[2024-06-13 15:41:21] 2024-06-13 13:41:20,604 [wrapper] ==== wrapper stderr END ====
[2024-06-13 15:41:21] 2024-06-13 13:41:20,608 [wrapper] apfmon messages muted
[2024-06-13 15:41:21]  *** Error codes and diagnostics ***
[2024-06-13 15:41:21]     "exeErrorCode": 0,
[2024-06-13 15:41:21]     "exeErrorDiag": "",
[2024-06-13 15:41:21]     "pilotErrorCode": 0,
[2024-06-13 15:41:21]     "pilotErrorDiag": "",
[2024-06-13 15:41:21]  *** Listing of results directory ***
[2024-06-13 15:41:21] total 957116
[2024-06-13 15:41:21] -rwx------ 1 boinc boinc     32308 Jun 11 11:20 runpilot2-wrapper.sh
[2024-06-13 15:41:21] -rw-r--r-- 1 boinc boinc      5654 Jun 11 11:20 queuedata.json
[2024-06-13 15:41:21] -rw-r--r-- 1 boinc boinc    469443 Jun 11 11:20 pilot3.tar.gz
[2024-06-13 15:41:21] -rw-r--r-- 1 boinc boinc       100 Jun 13 09:27 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-13 15:41:21] -rwxr-xr-x 1 boinc boinc      7986 Jun 13 09:27 run_atlas
[2024-06-13 15:41:21] -rw-r--r-- 1 boinc boinc       105 Jun 13 09:27 job.xml
[2024-06-13 15:41:21] -rw-r--r-- 1 boinc boinc      6662 Jun 13 09:27 init_data.xml
[2024-06-13 15:41:21] -rw-r--r-- 2 boinc boinc 636478964 Jun 13 09:27 EVNT.38776170._000779.pool.root.1
[2024-06-13 15:41:21] -rw-r--r-- 2 boinc boinc     17537 Jun 13 09:27 start_atlas.sh
[2024-06-13 15:41:21] drwxrwx--x 2 boinc boinc      4096 Jun 13 09:27 shared
[2024-06-13 15:41:21] -rw-r--r-- 2 boinc boinc    482045 Jun 13 09:27 input.tar.gz
[2024-06-13 15:41:21] -rw-r--r-- 1 boinc boinc         0 Jun 13 09:27 boinc_lockfile
[2024-06-13 15:41:21] -rw-r--r-- 1 boinc boinc      2619 Jun 13 09:27 pandaJob.out
[2024-06-13 15:41:21] -rw------- 1 boinc boinc       424 Jun 13 09:27 setup.sh.local
[2024-06-13 15:41:21] -rw------- 1 boinc boinc   1021890 Jun 13 09:27 agis_schedconf.cvmfs.json
[2024-06-13 15:41:21] -rw------- 1 boinc boinc   1324173 Jun 13 09:27 cric_ddmendpoints.json
[2024-06-13 15:41:21] drwx------ 4 boinc boinc      4096 Jun 13 09:27 pilot3
[2024-06-13 15:41:21] -rw------- 1 boinc boinc 334350759 Jun 13 15:40 HITS.38920987._054567.pool.root.1
[2024-06-13 15:41:21] -rw-r--r-- 1 boinc boinc       532 Jun 13 15:40 boinc_task_state.xml
[2024-06-13 15:41:21] -rw------- 1 boinc boinc        95 Jun 13 15:40 pilot_heartbeat.json
[2024-06-13 15:41:21] -rw------- 1 boinc boinc      1052 Jun 13 15:40 memory_monitor_summary.json
[2024-06-13 15:41:21] -rw------- 1 boinc boinc         0 Jun 13 15:40 agis_ddmendpoints.agis.ALL.json
[2024-06-13 15:41:21] -rw------- 1 boinc boinc    429437 Jun 13 15:40 log.38920987._054567.job.log.tgz.1
[2024-06-13 15:41:21] -rw------- 1 boinc boinc      7781 Jun 13 15:41 heartbeat.json
[2024-06-13 15:41:21] -rw-r--r-- 1 boinc boinc      8192 Jun 13 15:41 boinc_mmap_file
[2024-06-13 15:41:21] -rw-r--r-- 1 boinc boinc        28 Jun 13 15:41 wrapper_checkpoint.txt
[2024-06-13 15:41:21] -rw------- 1 boinc boinc      4344 Jun 13 15:41 pilotlog.txt
[2024-06-13 15:41:21] -rw------- 1 boinc boinc   2433016 Jun 13 15:41 log.38920987._054567.job.log.1
[2024-06-13 15:41:21] -rw------- 1 boinc boinc       357 Jun 13 15:41 output.list
[2024-06-13 15:41:21] -rw-r--r-- 1 boinc boinc       620 Jun 13 15:41 runtime_log
[2024-06-13 15:41:21] -rw------- 1 boinc boinc   2877440 Jun 13 15:41 result.tar.gz
[2024-06-13 15:41:21] -rw-r--r-- 1 boinc boinc     11410 Jun 13 15:41 runtime_log.err
[2024-06-13 15:41:21] -rw------- 1 boinc boinc       658 Jun 13 15:41 Sz7MDmCrCb5nsSi4ap6QjLDmwznN0nGgGQJmpmIZDmddaKDmbgkSZn.diag
[2024-06-13 15:41:21] -rw-r--r-- 1 boinc boinc     21377 Jun 13 15:41 stderr.txt
[2024-06-13 15:41:21] HITS file was successfully produced:
[2024-06-13 15:41:21] -rw------- 1 boinc boinc 334350759 Jun 13 15:40 shared/HITS.pool.root.1
[2024-06-13 15:41:21]  *** Contents of shared directory: ***
[2024-06-13 15:41:21] total 951392
[2024-06-13 15:41:21] -rw-r--r-- 2 boinc boinc 636478964 Jun 13 09:27 ATLAS.root_0
[2024-06-13 15:41:21] -rw-r--r-- 2 boinc boinc     17537 Jun 13 09:27 start_atlas.sh
[2024-06-13 15:41:21] -rw-r--r-- 2 boinc boinc    482045 Jun 13 09:27 input.tar.gz
[2024-06-13 15:41:21] -rw------- 1 boinc boinc 334350759 Jun 13 15:40 HITS.pool.root.1
[2024-06-13 15:41:21] -rw------- 1 boinc boinc   2877440 Jun 13 15:41 result.tar.gz
15:41:23 (2844895): run_atlas exited; CPU time 86069.409086
15:41:23 (2844895): called boinc_finish(0)

</stderr_txt>
]]>

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