Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:01:41 (1573707): wrapper (7.7.26015): starting
20:01:41 (1573707): wrapper: running run_atlas (--nthreads 4)
[2024-06-10 20:01:41] Arguments: --nthreads 4
[2024-06-10 20:01:41] Threads: 4
[2024-06-10 20:01:41] Checking for CVMFS
[2024-06-10 20:01:41] No cvmfs_config command found, will try listing directly
[2024-06-10 20:01:41] CVMFS is ok
[2024-06-10 20:01:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-06-10 20:01:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-06-10 20:01:41] Further information can be found at the LHC@home message board.
[2024-06-10 20:01:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-06-10 20:01:41] Checking for apptainer binary...
[2024-06-10 20:01:41] which: no apptainer in ((null))
[2024-06-10 20:01:41] apptainer is not installed, using version from CVMFS
[2024-06-10 20:01:41] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-06-10 20:01:42] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot64/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2024-06-10 20:01:42] apptainer works
[2024-06-10 20:01:42] Set ATHENA_PROC_NUMBER=4
[2024-06-10 20:01:42] Set ATHENA_CORE_NUMBER=4
[2024-06-10 20:01:42] Starting ATLAS job with PandaID=6222761996
[2024-06-10 20:01:42] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot64/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-06-11 05:48:14]  *** The last 200 lines of the pilot log: ***
[2024-06-11 05:48:14] 2024-06-11 03:47:53,028 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-06-11 05:48:14] 2024-06-11 03:47:53,039 | INFO     | fitting pss+swap vs Time
[2024-06-11 05:48:14] 2024-06-11 03:47:53,039 | INFO     | model: linear, x: [1718042554.0, 1718042615.0, 1718042676.0, 1718042737.0, 1718042798.0, 1718042859.0, 1718042920.0, 1718042981.0, 1718043042.0, 1718043103.0, 1718
[2024-06-11 05:48:14] 2024-06-11 03:47:53,040 | INFO     | sum of square deviations: 59257669200.0
[2024-06-11 05:48:14] 2024-06-11 03:47:53,048 | INFO     | sum of deviations: 284049619052.00006
[2024-06-11 05:48:14] 2024-06-11 03:47:53,048 | INFO     | mean x: 1718060091.5
[2024-06-11 05:48:14] 2024-06-11 03:47:53,048 | INFO     | mean y: 2318483.7256944445
[2024-06-11 05:48:14] 2024-06-11 03:47:53,048 | INFO     | -- intersect: -8233144049.434812
[2024-06-11 05:48:14] 2024-06-11 03:47:53,048 | INFO     | intersect: -8233144049.434812
[2024-06-11 05:48:14] 2024-06-11 03:47:53,049 | INFO     | chi2: 4.958504221482468
[2024-06-11 05:48:14] 2024-06-11 03:47:53,049 | INFO     | model: linear, x: [1718042554.0, 1718042615.0, 1718042676.0, 1718042737.0, 1718042798.0, 1718042859.0, 1718042920.0, 1718042981.0, 1718043042.0, 1718043103.0, 1718
[2024-06-11 05:48:14] 2024-06-11 03:47:53,050 | INFO     | sum of square deviations: 57727854470.0
[2024-06-11 05:48:14] 2024-06-11 03:47:53,057 | INFO     | sum of deviations: 319256260894.99994
[2024-06-11 05:48:14] 2024-06-11 03:47:53,058 | INFO     | mean x: 1718059939.0
[2024-06-11 05:48:14] 2024-06-11 03:47:53,058 | INFO     | mean y: 2321966.7705779336
[2024-06-11 05:48:14] 2024-06-11 03:47:53,058 | INFO     | -- intersect: -9499181201.057646
[2024-06-11 05:48:14] 2024-06-11 03:47:53,058 | INFO     | intersect: -9499181201.057646
[2024-06-11 05:48:14] 2024-06-11 03:47:53,059 | INFO     | chi2: 4.111294601594514
[2024-06-11 05:48:14] 2024-06-11 03:47:53,059 | INFO     | current chi2=4.111294601594514 (change=17.08599170325321 %)
[2024-06-11 05:48:14] 2024-06-11 03:47:53,059 | INFO     | right removable region: 570
[2024-06-11 05:48:14] 2024-06-11 03:47:53,059 | INFO     | model: linear, x: [1718042859.0, 1718042920.0, 1718042981.0, 1718043042.0, 1718043103.0, 1718043164.0, 1718043225.0, 1718043286.0, 1718043347.0, 1718043408.0, 1718
[2024-06-11 05:48:14] 2024-06-11 03:47:53,060 | INFO     | sum of square deviations: 57727854470.0
[2024-06-11 05:48:14] 2024-06-11 03:47:53,067 | INFO     | sum of deviations: 148895972807.0
[2024-06-11 05:48:14] 2024-06-11 03:47:53,067 | INFO     | mean x: 1718060244.0
[2024-06-11 05:48:14] 2024-06-11 03:47:53,067 | INFO     | mean y: 2331941.761821366
[2024-06-11 05:48:14] 2024-06-11 03:47:53,067 | INFO     | -- intersect: -4429016732.461854
[2024-06-11 05:48:14] 2024-06-11 03:47:53,068 | INFO     | intersect: -4429016732.461854
[2024-06-11 05:48:14] 2024-06-11 03:47:53,068 | INFO     | chi2: 2.55555684718623
[2024-06-11 05:48:14] 2024-06-11 03:47:53,068 | INFO     | current chi2=2.55555684718623 (change=48.46113398241329 %)
[2024-06-11 05:48:14] 2024-06-11 03:47:53,069 | INFO     | model: linear, x: [1718043164.0, 1718043225.0, 1718043286.0, 1718043347.0, 1718043408.0, 1718043469.0, 1718043530.0, 1718043591.0, 1718043652.0, 1718043713.0, 1718
[2024-06-11 05:48:14] 2024-06-11 03:47:53,069 | INFO     | sum of square deviations: 56224598377.5
[2024-06-11 05:48:14] 2024-06-11 03:47:53,077 | INFO     | sum of deviations: 34561649162.499985
[2024-06-11 05:48:14] 2024-06-11 03:47:53,077 | INFO     | mean x: 1718060396.5
[2024-06-11 05:48:14] 2024-06-11 03:47:53,077 | INFO     | mean y: 2343542.464664311
[2024-06-11 05:48:14] 2024-06-11 03:47:53,077 | INFO     | -- intersect: -1053760055.9130335
[2024-06-11 05:48:14] 2024-06-11 03:47:53,077 | INFO     | intersect: -1053760055.9130335
[2024-06-11 05:48:14] 2024-06-11 03:47:53,078 | INFO     | chi2: 0.9748226990335682
[2024-06-11 05:48:14] 2024-06-11 03:47:53,078 | INFO     | current chi2=0.9748226990335682 (change=61.8547832302425 %)
[2024-06-11 05:48:14] 2024-06-11 03:47:53,078 | INFO     | model: linear, x: [1718043469.0, 1718043530.0, 1718043591.0, 1718043652.0, 1718043713.0, 1718043774.0, 1718043835.0, 1718043896.0, 1718043957.0, 1718044018.0, 1718
[2024-06-11 05:48:14] 2024-06-11 03:47:53,079 | INFO     | sum of square deviations: 54747668360.0
[2024-06-11 05:48:14] 2024-06-11 03:47:53,086 | INFO     | sum of deviations: 11025920861.0
[2024-06-11 05:48:14] 2024-06-11 03:47:53,086 | INFO     | mean x: 1718060549.0
[2024-06-11 05:48:14] 2024-06-11 03:47:53,086 | INFO     | mean y: 2345963.871657754
[2024-06-11 05:48:14] 2024-06-11 03:47:53,086 | INFO     | -- intersect: -343663285.7481961
[2024-06-11 05:48:14] 2024-06-11 03:47:53,086 | INFO     | intersect: -343663285.7481961
[2024-06-11 05:48:14] 2024-06-11 03:47:53,087 | INFO     | chi2: 0.8708526499482573
[2024-06-11 05:48:14] 2024-06-11 03:47:53,088 | INFO     | current chi2=0.8708526499482573 (change=10.665534274939027 %)
[2024-06-11 05:48:14] 2024-06-11 03:47:53,088 | INFO     | left removable region: 30
[2024-06-11 05:48:14] 2024-06-11 03:47:53,088 | INFO     | model: linear, x: [1718044384.0, 1718044445.0, 1718044506.0, 1718044567.0, 1718044628.0, 1718044689.0, 1718044750.0, 1718044811.0, 1718044872.0, 1718044933.0, 1718
[2024-06-11 05:48:14] 2024-06-11 03:47:53,088 | INFO     | sum of square deviations: 48826794555.0
[2024-06-11 05:48:14] 2024-06-11 03:47:53,095 | INFO     | sum of deviations: 37603729746.000015
[2024-06-11 05:48:14] 2024-06-11 03:47:53,095 | INFO     | mean x: 1718060823.5
[2024-06-11 05:48:14] 2024-06-11 03:47:53,096 | INFO     | mean y: 2350855.251851852
[2024-06-11 05:48:14] 2024-06-11 03:47:53,096 | INFO     | -- intersect: -1320805732.906124
[2024-06-11 05:48:14] 2024-06-11 03:47:53,096 | INFO     | intersect: -1320805732.906124
[2024-06-11 05:48:14] 2024-06-11 03:47:53,096 | INFO     | chi2: 0.001725117814444177
[2024-06-11 05:48:14] 2024-06-11 03:47:53,097 | INFO     | -- intersect: -1320805732.906124
[2024-06-11 05:48:14] 2024-06-11 03:47:53,097 | INFO     | current memory leak: 0.77 B/s (using 540 data points, chi2=0.00)
[2024-06-11 05:48:14] 2024-06-11 03:47:53,097 | INFO     | ..............................
[2024-06-11 05:48:14] 2024-06-11 03:47:53,097 | INFO     | . Timing measurements:
[2024-06-11 05:48:14] 2024-06-11 03:47:53,097 | INFO     | . get job = 0 s
[2024-06-11 05:48:14] 2024-06-11 03:47:53,098 | INFO     | . initial setup = 1 s
[2024-06-11 05:48:14] 2024-06-11 03:47:53,098 | INFO     | . payload setup = 8 s
[2024-06-11 05:48:14] 2024-06-11 03:47:53,098 | INFO     | . stage-in = 0 s
[2024-06-11 05:48:14] 2024-06-11 03:47:53,098 | INFO     | . payload execution = 35116 s
[2024-06-11 05:48:14] 2024-06-11 03:47:53,098 | INFO     | . stage-out = 1 s
[2024-06-11 05:48:14] 2024-06-11 03:47:53,098 | INFO     | . log creation = 0 s
[2024-06-11 05:48:14] 2024-06-11 03:47:53,098 | INFO     | ..............................
[2024-06-11 05:48:14] 2024-06-11 03:47:53,178 | INFO     | 
[2024-06-11 05:48:14] 2024-06-11 03:47:53,178 | INFO     | job summary report
[2024-06-11 05:48:14] 2024-06-11 03:47:53,178 | INFO     | --------------------------------------------------
[2024-06-11 05:48:14] 2024-06-11 03:47:53,178 | INFO     | PanDA job id: 6222761996
[2024-06-11 05:48:14] 2024-06-11 03:47:53,178 | INFO     | task id: 38921007
[2024-06-11 05:48:14] 2024-06-11 03:47:53,178 | INFO     | errors: (none)
[2024-06-11 05:48:14] 2024-06-11 03:47:53,178 | INFO     | status: LOG_TRANSFER = DONE 
[2024-06-11 05:48:14] 2024-06-11 03:47:53,178 | INFO     | pilot state: finished 
[2024-06-11 05:48:14] 2024-06-11 03:47:53,179 | INFO     | transexitcode: 0
[2024-06-11 05:48:14] 2024-06-11 03:47:53,179 | INFO     | exeerrorcode: 0
[2024-06-11 05:48:14] 2024-06-11 03:47:53,179 | INFO     | exeerrordiag: 
[2024-06-11 05:48:14] 2024-06-11 03:47:53,179 | INFO     | exitcode: 0
[2024-06-11 05:48:14] 2024-06-11 03:47:53,179 | INFO     | exitmsg: OK
[2024-06-11 05:48:14] 2024-06-11 03:47:53,179 | INFO     | cpuconsumptiontime: 137541 s
[2024-06-11 05:48:14] 2024-06-11 03:47:53,179 | INFO     | nevents: 400
[2024-06-11 05:48:14] 2024-06-11 03:47:53,179 | INFO     | neventsw: 0
[2024-06-11 05:48:14] 2024-06-11 03:47:53,179 | INFO     | pid: 1588875
[2024-06-11 05:48:14] 2024-06-11 03:47:53,179 | INFO     | pgrp: 1588875
[2024-06-11 05:48:14] 2024-06-11 03:47:53,179 | INFO     | corecount: 4
[2024-06-11 05:48:14] 2024-06-11 03:47:53,179 | INFO     | event service: False
[2024-06-11 05:48:14] 2024-06-11 03:47:53,179 | INFO     | sizes: {0: 2392473, 1: 2393408, 9: 2393614, 12: 2393642, 35128: 2433430, 35129: 2442412, 35131: 2442596, 35135: 2442766}
[2024-06-11 05:48:14] 2024-06-11 03:47:53,180 | INFO     | --------------------------------------------------
[2024-06-11 05:48:14] 2024-06-11 03:47:53,180 | INFO     | 
[2024-06-11 05:48:14] 2024-06-11 03:47:53,180 | INFO     | executing command: ls -lF /scratch/boinc/var/slot64/slots/0
[2024-06-11 05:48:14] 2024-06-11 03:47:53,207 | INFO     | queue jobs had 0 job(s) [purged]
[2024-06-11 05:48:14] 2024-06-11 03:47:53,207 | INFO     | queue payloads had 0 job(s) [purged]
[2024-06-11 05:48:14] 2024-06-11 03:47:53,207 | INFO     | queue data_in had 0 job(s) [purged]
[2024-06-11 05:48:14] 2024-06-11 03:47:53,208 | INFO     | queue data_out had 0 job(s) [purged]
[2024-06-11 05:48:14] 2024-06-11 03:47:53,208 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-06-11 05:48:14] 2024-06-11 03:47:53,208 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-06-11 05:48:14] 2024-06-11 03:47:53,208 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-06-11 05:48:14] 2024-06-11 03:47:53,208 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-06-11 05:48:14] 2024-06-11 03:47:53,208 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-06-11 05:48:14] 2024-06-11 03:47:53,208 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-06-11 05:48:14] 2024-06-11 03:47:53,208 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-06-11 05:48:14] 2024-06-11 03:47:53,208 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-06-11 05:48:14] 2024-06-11 03:47:53,208 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-06-11 05:48:14] 2024-06-11 03:47:53,208 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-06-11 05:48:14] 2024-06-11 03:47:53,209 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-06-11 05:48:14] 2024-06-11 03:47:53,209 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-06-11 05:48:14] 2024-06-11 03:47:53,209 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-06-11 05:48:14] 2024-06-11 03:47:53,209 | INFO     | queue completed_jobids has 1 job(s)
[2024-06-11 05:48:14] 2024-06-11 03:47:53,209 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-06-11 05:48:14] 2024-06-11 03:47:53,209 | INFO     | queue messages had 0 job(s) [purged]
[2024-06-11 05:48:14] 2024-06-11 03:47:53,209 | INFO     | job 6222761996 has completed (purged errors)
[2024-06-11 05:48:14] 2024-06-11 03:47:53,209 | INFO     | overall cleanup function is called
[2024-06-11 05:48:14] 2024-06-11 03:47:54,217 | INFO     | --- collectZombieJob: --- 10, [1588875]
[2024-06-11 05:48:14] 2024-06-11 03:47:54,217 | INFO     | zombie collector waiting for pid 1588875
[2024-06-11 05:48:14] 2024-06-11 03:47:54,217 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-06-11 05:48:14] 2024-06-11 03:47:55,218 | INFO     | collected zombie processes
[2024-06-11 05:48:14] 2024-06-11 03:47:55,218 | INFO     | will now attempt to kill all subprocesses of pid=1588875
[2024-06-11 05:48:14] 2024-06-11 03:47:55,518 | INFO     | process IDs to be killed: [1588875] (in reverse order)
[2024-06-11 05:48:14] 2024-06-11 03:47:55,707 | WARNING  | found no corresponding commands to process id(s)
[2024-06-11 05:48:14] 2024-06-11 03:47:55,707 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-06-11 05:48:14] 2024-06-11 03:47:55,722 | INFO     | did not find any defunct processes belonging to 1588875
[2024-06-11 05:48:14] 2024-06-11 03:47:55,731 | INFO     | did not find any defunct processes belonging to 1588875
[2024-06-11 05:48:14] 2024-06-11 03:47:55,732 | INFO     | ready for new job
[2024-06-11 05:48:14] 2024-06-11 03:47:55,732 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-06-11 05:48:14] 2024-06-11 03:47:55,735 | INFO     | *************************************
[2024-06-11 05:48:14] 2024-06-11 03:47:55,735 | INFO     | ***  PanDA Pilot version 3.7.6.8  ***
[2024-06-11 05:48:14] 2024-06-11 03:47:55,735 | INFO     | *************************************
[2024-06-11 05:48:14] 2024-06-11 03:47:55,735 | INFO     | 
[2024-06-11 05:48:14] 2024-06-11 03:47:55,742 | INFO     | architecture information:
[2024-06-11 05:48:14] 2024-06-11 03:47:55,742 | INFO     | executing command: cat /etc/os-release
[2024-06-11 05:48:14] 2024-06-11 03:47:55,753 | INFO     | cat /etc/os-release:
[2024-06-11 05:48:14] NAME="CentOS Linux"
[2024-06-11 05:48:14] VERSION="7 (Core)"
[2024-06-11 05:48:14] ID="centos"
[2024-06-11 05:48:14] ID_LIKE="rhel fedora"
[2024-06-11 05:48:14] VERSION_ID="7"
[2024-06-11 05:48:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-06-11 05:48:14] ANSI_COLOR="0;31"
[2024-06-11 05:48:14] CPE_NAME="cpe:/o:centos:centos:7"
[2024-06-11 05:48:14] HOME_URL="https://www.centos.org/"
[2024-06-11 05:48:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-06-11 05:48:14] 
[2024-06-11 05:48:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-06-11 05:48:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-06-11 05:48:14] REDHAT_SUPPORT_PRODUCT="centos"
[2024-06-11 05:48:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-06-11 05:48:14] 
[2024-06-11 05:48:14] 2024-06-11 03:47:55,754 | INFO     | *************************************
[2024-06-11 05:48:14] 2024-06-11 03:47:55,994 | INFO     | 35157s have passed since pilot start
[2024-06-11 05:48:14] 2024-06-11 03:47:56,256 | INFO     | executing command: df -mP /scratch/boinc/var/slot64/slots/0
[2024-06-11 05:48:14] 2024-06-11 03:47:56,282 | INFO     | sufficient remaining disk space (3049608183808 B)
[2024-06-11 05:48:14] 2024-06-11 03:47:56,282 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-06-11 05:48:14] 2024-06-11 03:47:56,282 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-06-11 05:48:14] 2024-06-11 03:47:56,581 | INFO     | all data control threads have been joined
[2024-06-11 05:48:14] 2024-06-11 03:47:56,692 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-06-11 05:48:14] 2024-06-11 03:47:56,692 | INFO     | aborting loop
[2024-06-11 05:48:14] 2024-06-11 03:47:56,999 | INFO     | found 0 job(s) in 20 queues
[2024-06-11 05:48:14] 2024-06-11 03:47:56,999 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-06-11 05:48:14] 2024-06-11 03:47:56,999 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-06-11 05:48:14] 2024-06-11 03:47:57,287 | INFO     | [job] retrieve thread has finished
[2024-06-11 05:48:14] 2024-06-11 03:47:57,337 | INFO     | all payload control threads have been joined
[2024-06-11 05:48:14] 2024-06-11 03:47:57,475 | INFO     | [data] copytool_in thread has finished
[2024-06-11 05:48:14] 2024-06-11 03:47:57,559 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-06-11 05:48:14] 2024-06-11 03:47:57,586 | INFO     | [data] control thread has finished
[2024-06-11 05:48:14] 2024-06-11 03:47:57,624 | INFO     | [payload] failed_post thread has finished
[2024-06-11 05:48:14] 2024-06-11 03:47:57,697 | INFO     | [job] job monitor thread has finished
[2024-06-11 05:48:14] 2024-06-11 03:47:57,846 | INFO     | [job] validate thread has finished
[2024-06-11 05:48:14] 2024-06-11 03:47:57,950 | INFO     | all job control threads have been joined
[2024-06-11 05:48:14] 2024-06-11 03:47:58,179 | INFO     | [payload] validate_post thread has finished
[2024-06-11 05:48:14] 2024-06-11 03:47:58,187 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-06-11 05:48:14] 2024-06-11 03:47:58,214 | INFO     | [payload] validate_pre thread has finished
[2024-06-11 05:48:14] 2024-06-11 03:47:58,240 | INFO     | [job] create_data_payload thread has finished
[2024-06-11 05:48:14] 2024-06-11 03:47:58,342 | INFO     | [payload] control thread has finished
[2024-06-11 05:48:14] 2024-06-11 03:47:58,714 | INFO     | [payload] execute_payloads thread has finished
[2024-06-11 05:48:14] 2024-06-11 03:47:58,955 | INFO     | [job] control thread has finished
[2024-06-11 05:48:14] 2024-06-11 03:47:59,192 | INFO     | [job] queue monitor thread has finished
[2024-06-11 05:48:14] 2024-06-11 03:47:59,204 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-06-11 05:48:14] 2024-06-11 03:47:59,565 | INFO     | [data] copytool_out thread has finished
[2024-06-11 05:48:14] 2024-06-11 03:48:03,209 | INFO     | [data] queue_monitor thread has finished
[2024-06-11 05:48:14] 2024-06-11 03:48:06,712 | INFO     | job.realtimelogging is not enabled
[2024-06-11 05:48:14] 2024-06-11 03:48:07,717 | INFO     | [payload] run_realtimelog thread has finished
[2024-06-11 05:48:14] 2024-06-11 03:48:08,932 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47470312145984)>', '<ExcThread(monitor, started 47470483396352)>']
[2024-06-11 05:48:14] 2024-06-11 03:48:09,062 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-06-11 05:48:14] 2024-06-11 03:48:09,062 | INFO     | [monitor] control thread has ended
[2024-06-11 05:48:14] 2024-06-11 03:48:13,957 | INFO     | all workflow threads have been joined
[2024-06-11 05:48:14] 2024-06-11 03:48:13,957 | INFO     | end of generic workflow (traces error code: 0)
[2024-06-11 05:48:14] 2024-06-11 03:48:13,957 | INFO     | traces error code: 0
[2024-06-11 05:48:14] 2024-06-11 03:48:13,958 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-06-11 05:48:14] 2024-06-11 03:48:14,061 [wrapper] ==== pilot stdout END ====
[2024-06-11 05:48:14] 2024-06-11 03:48:14,064 [wrapper] ==== wrapper stdout RESUME ====
[2024-06-11 05:48:14] 2024-06-11 03:48:14,067 [wrapper] pilotpid: 1578399
[2024-06-11 05:48:14] 2024-06-11 03:48:14,069 [wrapper] Pilot exit status: 0
[2024-06-11 05:48:14] 2024-06-11 03:48:14,084 [wrapper] pandaids: 6222761996
[2024-06-11 05:48:14] 2024-06-11 03:48:14,230 [wrapper] cleanup supervisor_pilot 4086226 1578400
[2024-06-11 05:48:14] 2024-06-11 03:48:14,233 [wrapper] Test setup, not cleaning
[2024-06-11 05:48:14] 2024-06-11 03:48:14,235 [wrapper] ==== wrapper stdout END ====
[2024-06-11 05:48:14] 2024-06-11 03:48:14,237 [wrapper] ==== wrapper stderr END ====
[2024-06-11 05:48:14] 2024-06-11 03:48:14,240 [wrapper] apfmon messages muted
[2024-06-11 05:48:14]  *** Error codes and diagnostics ***
[2024-06-11 05:48:14]     "exeErrorCode": 0,
[2024-06-11 05:48:14]     "exeErrorDiag": "",
[2024-06-11 05:48:14]     "pilotErrorCode": 0,
[2024-06-11 05:48:14]     "pilotErrorDiag": "",
[2024-06-11 05:48:14]  *** Listing of results directory ***
[2024-06-11 05:48:14] total 927496
[2024-06-11 05:48:14] -rw-r--r-- 1 boinc boinc    469443 Jun  6 00:48 pilot3.tar.gz
[2024-06-11 05:48:14] -rwx------ 1 boinc boinc     32308 Jun  6 00:56 runpilot2-wrapper.sh
[2024-06-11 05:48:14] -rw-r--r-- 1 boinc boinc      5654 Jun  6 00:56 queuedata.json
[2024-06-11 05:48:14] -rw-r--r-- 1 boinc boinc       100 Jun 10 20:01 wrapper_26015_x86_64-pc-linux-gnu
[2024-06-11 05:48:14] -rwxr-xr-x 1 boinc boinc      7986 Jun 10 20:01 run_atlas
[2024-06-11 05:48:14] -rw-r--r-- 1 boinc boinc       105 Jun 10 20:01 job.xml
[2024-06-11 05:48:14] -rw-r--r-- 1 boinc boinc      6643 Jun 10 20:01 init_data.xml
[2024-06-11 05:48:14] -rw-r--r-- 2 boinc boinc 585669025 Jun 10 20:01 EVNT.38776201._000444.pool.root.1
[2024-06-11 05:48:14] -rw-r--r-- 2 boinc boinc     17537 Jun 10 20:01 start_atlas.sh
[2024-06-11 05:48:14] drwxrwx--x 2 boinc boinc      4096 Jun 10 20:01 shared
[2024-06-11 05:48:14] -rw-r--r-- 2 boinc boinc    482051 Jun 10 20:01 input.tar.gz
[2024-06-11 05:48:14] -rw-r--r-- 1 boinc boinc         0 Jun 10 20:01 boinc_lockfile
[2024-06-11 05:48:14] -rw-r--r-- 1 boinc boinc      2630 Jun 10 20:01 pandaJob.out
[2024-06-11 05:48:14] -rw------- 1 boinc boinc       424 Jun 10 20:01 setup.sh.local
[2024-06-11 05:48:14] -rw------- 1 boinc boinc   1015821 Jun 10 20:01 agis_schedconf.cvmfs.json
[2024-06-11 05:48:14] -rw------- 1 boinc boinc   1324173 Jun 10 20:01 cric_ddmendpoints.json
[2024-06-11 05:48:14] drwx------ 4 boinc boinc      4096 Jun 10 20:01 pilot3
[2024-06-11 05:48:14] -rw------- 1 boinc boinc 351063866 Jun 11 05:47 HITS.38921007._021401.pool.root.1
[2024-06-11 05:48:14] -rw-r--r-- 1 boinc boinc       532 Jun 11 05:47 boinc_task_state.xml
[2024-06-11 05:48:14] -rw------- 1 boinc boinc      1044 Jun 11 05:47 memory_monitor_summary.json
[2024-06-11 05:48:14] -rw------- 1 boinc boinc         0 Jun 11 05:47 agis_ddmendpoints.agis.ALL.json
[2024-06-11 05:48:14] -rw------- 1 boinc boinc    563100 Jun 11 05:47 log.38921007._021401.job.log.tgz.1
[2024-06-11 05:48:14] -rw-r--r-- 1 boinc boinc      8192 Jun 11 05:47 boinc_mmap_file
[2024-06-11 05:48:14] -rw-r--r-- 1 boinc boinc        29 Jun 11 05:47 wrapper_checkpoint.txt
[2024-06-11 05:48:14] -rw------- 1 boinc boinc        95 Jun 11 05:47 pilot_heartbeat.json
[2024-06-11 05:48:14] -rw------- 1 boinc boinc      7730 Jun 11 05:47 heartbeat.json
[2024-06-11 05:48:14] -rw------- 1 boinc boinc      4368 Jun 11 05:48 pilotlog.txt
[2024-06-11 05:48:14] -rw------- 1 boinc boinc   4182583 Jun 11 05:48 log.38921007._021401.job.log.1
[2024-06-11 05:48:14] -rw------- 1 boinc boinc       357 Jun 11 05:48 output.list
[2024-06-11 05:48:14] -rw-r--r-- 1 boinc boinc       620 Jun 11 05:48 runtime_log
[2024-06-11 05:48:14] -rw------- 1 boinc boinc   4761600 Jun 11 05:48 result.tar.gz
[2024-06-11 05:48:14] -rw-r--r-- 1 boinc boinc     11410 Jun 11 05:48 runtime_log.err
[2024-06-11 05:48:14] -rw------- 1 boinc boinc       662 Jun 11 05:48 l9sLDm4jEZ5n9Rq4apOajLDm4fhM0noT9bVo2ijZDmo9NKDm6Bcwin.diag
[2024-06-11 05:48:14] -rw-r--r-- 1 boinc boinc     21282 Jun 11 05:48 stderr.txt
[2024-06-11 05:48:14] HITS file was successfully produced:
[2024-06-11 05:48:14] -rw------- 1 boinc boinc 351063866 Jun 11 05:47 shared/HITS.pool.root.1
[2024-06-11 05:48:15]  *** Contents of shared directory: ***
[2024-06-11 05:48:15] total 919932
[2024-06-11 05:48:15] -rw-r--r-- 2 boinc boinc 585669025 Jun 10 20:01 ATLAS.root_0
[2024-06-11 05:48:15] -rw-r--r-- 2 boinc boinc     17537 Jun 10 20:01 start_atlas.sh
[2024-06-11 05:48:15] -rw-r--r-- 2 boinc boinc    482051 Jun 10 20:01 input.tar.gz
[2024-06-11 05:48:15] -rw------- 1 boinc boinc 351063866 Jun 11 05:47 HITS.pool.root.1
[2024-06-11 05:48:15] -rw------- 1 boinc boinc   4761600 Jun 11 05:48 result.tar.gz
05:48:16 (1573707): run_atlas exited; CPU time 136697.744265
05:48:16 (1573707): called boinc_finish(0)

</stderr_txt>
]]>

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