| Name | HINODmjAsT5n9Rq4apoT9bVoABFKDmABFKDmlqFKDm0sPKDmsUm1Hm_0 |
| Workunit | 223183902 |
| Created | 22 May 2024, 3:50:33 UTC |
| Sent | 3 Jun 2024, 23:18:04 UTC |
| Report deadline | 14 Jun 2026, 6:39:28 UTC |
| Received | 22 May 2024, 15:57:22 UTC |
| Server state | In progress |
| Outcome | Success |
| Client state | Compute error |
| Exit status | 0 (0x00000000) |
| Computer ID | 10701168 |
| Run time | 9 hours 0 min 50 sec |
| CPU time | 1 days 5 hours 24 min 16 sec |
| Validate state | Initial |
| Credit | 0.00 |
| Device peak FLOPS | 32.33 GFLOPS |
| Application version | ATLAS Simulation v3.01 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 2.48 GB |
| Peak swap size | 31.84 GB |
| Peak disk usage | 1.50 GB |
Stderr output
<core_client_version>7.7.0</core_client_version> <![CDATA[ <stderr_txt> 02:53:22 (256990): wrapper (7.7.26015): starting 02:53:22 (256990): wrapper: running run_atlas (--nthreads 8) [2024-05-22 02:53:22] Arguments: --nthreads 8 [2024-05-22 02:53:22] Threads: 8 [2024-05-22 02:53:22] Checking for CVMFS [2024-05-22 02:53:23] Probing /cvmfs/atlas.cern.ch... OK [2024-05-22 02:53:24] Probing /cvmfs/atlas-condb.cern.ch... OK [2024-05-22 02:53:24] Running cvmfs_config stat atlas.cern.ch [2024-05-22 02:53:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE [2024-05-22 02:53:24] 2.11.2.0 72212 3685 213500 133017 2 263 11793497 18432001 17911 130560 0 19045772 98.743 40511911 29152 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1 [2024-05-22 02:53:24] CVMFS is ok [2024-05-22 02:53:24] Efficiency of ATLAS tasks can be improved by the following measure(s): [2024-05-22 02:53:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io. [2024-05-22 02:53:24] Further information can be found at the LHC@home message board. [2024-05-22 02:53:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 [2024-05-22 02:53:24] Checking for apptainer binary... [2024-05-22 02:53:25] Using apptainer found in PATH at /usr/bin/apptainer [2024-05-22 02:53:25] Running /usr/bin/apptainer --version [2024-05-22 02:53:25] apptainer version 1.3.0-1.el7 [2024-05-22 02:53:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname [2024-05-22 02:53:57] c6-6-8-2.aglt2.org [2024-05-22 02:53:57] apptainer works [2024-05-22 02:53:57] Set ATHENA_PROC_NUMBER=8 [2024-05-22 02:53:57] Set ATHENA_CORE_NUMBER=8 [2024-05-22 02:53:57] Starting ATLAS job with PandaID=6212073883 [2024-05-22 02:53:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh [2024-05-22 11:54:08] *** The last 200 lines of the pilot log: *** [2024-05-22 11:54:08] File "/tmp/boinchome/slots/5/pilot3/pilot/user/atlas/common.py", line 2098, in remove_redundant_files [2024-05-22 11:54:08] list_work_dir(workdir) [2024-05-22 11:54:08] File "/tmp/boinchome/slots/5/pilot3/pilot/user/atlas/common.py", line 2045, in list_work_dir [2024-05-22 11:54:08] _, stdout, stderr = execute(cmd) [2024-05-22 11:54:08] File "/tmp/boinchome/slots/5/pilot3/pilot/util/container.py", line 94, in execute [2024-05-22 11:54:08] process = subprocess.Popen(exe, [2024-05-22 11:54:08] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__ [2024-05-22 11:54:08] self._execute_child(args, executable, preexec_fn, close_fds, [2024-05-22 11:54:08] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child [2024-05-22 11:54:08] raise child_exception_type(errno_num, err_msg, err_filename) [2024-05-22 11:54:08] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash' [2024-05-22 11:54:08] [2024-05-22 11:54:08] None [2024-05-22 11:54:08] exception has been put in bucket queue belonging to thread 'copytool_out' [2024-05-22 11:54:08] setting graceful stop in 10 s since there is no point in continuing [2024-05-22 11:54:08] 2024-05-22 15:51:26,588 | WARNING | thread 'copytool_out' received an exception from bucket: [Errno 107] Transport endpoint is not connected: '/bin/bash' [2024-05-22 11:54:08] 2024-05-22 15:51:27,906 | INFO | monitor loop #2191: job 0:6212073883 is in state 'failed' [2024-05-22 11:54:08] 2024-05-22 15:51:27,907 | INFO | will abort job monitoring soon since job state=failed (job is still in queue) [2024-05-22 11:54:08] 2024-05-22 15:51:30,410 | INFO | monitor loop #2192: job 0:6212073883 is in state 'failed' [2024-05-22 11:54:08] 2024-05-22 15:51:30,411 | INFO | will abort job monitoring soon since job state=failed (job is still in queue) [2024-05-22 11:54:08] 2024-05-22 15:51:32,914 | INFO | monitor loop #2193: job 0:6212073883 is in state 'failed' [2024-05-22 11:54:08] 2024-05-22 15:51:32,915 | INFO | will abort job monitoring soon since job state=failed (job is still in queue) [2024-05-22 11:54:08] 2024-05-22 15:51:35,417 | INFO | monitor loop #2194: job 0:6212073883 is in state 'failed' [2024-05-22 11:54:08] 2024-05-22 15:51:35,418 | INFO | will abort job monitoring soon since job state=failed (job is still in queue) [2024-05-22 11:54:08] 2024-05-22 15:51:35,762 | WARNING | job:job_monitor:received graceful stop - abort after this iteration [2024-05-22 11:54:08] 2024-05-22 15:51:35,763 | WARNING | job:queue_monitor:received graceful stop - abort after this iteration [2024-05-22 11:54:08] 2024-05-22 15:51:35,763 | INFO | will abort loop [2024-05-22 11:54:08] 2024-05-22 15:51:35,763 | WARNING | since job:queue_monitor is responsible for sending job updates, we sleep for 20 s [2024-05-22 11:54:08] 2024-05-22 15:51:36,143 | INFO | found 1 job(s) in 20 queues [2024-05-22 11:54:08] 2024-05-22 15:51:36,144 | INFO | aborting job 6212073883 [2024-05-22 11:54:08] 2024-05-22 15:51:36,268 | WARNING | pilot monitor received instruction that args.graceful_stop has been set [2024-05-22 11:54:08] 2024-05-22 15:51:36,268 | WARNING | will wait for a maximum of 300 s for threads to finish [2024-05-22 11:54:08] 2024-05-22 15:51:36,354 | INFO | all data control threads have been joined [2024-05-22 11:54:08] 2024-05-22 15:51:36,769 | INFO | [job] job monitor thread has finished [2024-05-22 11:54:08] 2024-05-22 15:51:36,778 | INFO | [payload] run_realtimelog thread has finished [2024-05-22 11:54:08] 2024-05-22 15:51:36,906 | INFO | all payload control threads have been joined [2024-05-22 11:54:08] 2024-05-22 15:51:37,038 | INFO | [job] validate thread has finished [2024-05-22 11:54:08] 2024-05-22 15:51:37,062 | INFO | [data] copytool_in thread has finished [2024-05-22 11:54:08] 2024-05-22 15:51:37,292 | INFO | [job] create_data_payload thread has finished [2024-05-22 11:54:08] 2024-05-22 15:51:37,354 | INFO | all job control threads have been joined [2024-05-22 11:54:08] 2024-05-22 15:51:37,360 | INFO | [data] control thread has finished [2024-05-22 11:54:08] 2024-05-22 15:51:37,560 | INFO | [payload] validate_pre thread has finished [2024-05-22 11:54:08] 2024-05-22 15:51:37,823 | INFO | [job] retrieve thread has finished [2024-05-22 11:54:08] 2024-05-22 15:51:37,911 | INFO | [payload] control thread has finished [2024-05-22 11:54:08] 2024-05-22 15:51:37,928 | INFO | [payload] failed_post thread has finished [2024-05-22 11:54:08] 2024-05-22 15:51:38,260 | WARNING | data:queue_monitoring:received graceful stop - abort after this iteration [2024-05-22 11:54:08] 2024-05-22 15:51:38,293 | INFO | [payload] validate_post thread has finished [2024-05-22 11:54:08] 2024-05-22 15:51:38,360 | INFO | [job] control thread has finished [2024-05-22 11:54:08] 2024-05-22 15:51:41,716 | INFO | [payload] execute_payloads thread has finished [2024-05-22 11:54:08] 2024-05-22 15:51:42,269 | INFO | [data] queue_monitor thread has finished [2024-05-22 11:54:08] 2024-05-22 15:51:56,868 | INFO | job 6212073883 has state=failed [2024-05-22 11:54:08] 2024-05-22 15:51:56,869 | INFO | preparing for final server update for job 6212073883 in state='failed' [2024-05-22 11:54:08] 2024-05-22 15:51:57,384 | WARNING | job_aborted has been set - aborting pilot monitoring [2024-05-22 11:54:08] 2024-05-22 15:51:57,384 | INFO | [monitor] control thread has ended [2024-05-22 11:54:08] 2024-05-22 15:51:57,927 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:51:59,939 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:52:01,951 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:52:03,963 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:52:05,976 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:52:07,988 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:52:10,000 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:52:12,011 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:52:14,023 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:52:16,033 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:52:18,044 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:52:20,056 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:52:22,068 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:52:24,080 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:52:26,091 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:52:28,102 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:52:30,114 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:52:32,126 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:52:34,137 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:52:36,149 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:52:38,161 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:52:40,173 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:52:42,185 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:52:44,198 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:52:46,209 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:52:48,219 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:52:50,231 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:52:52,241 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:52:54,252 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:52:56,266 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:52:58,278 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:53:00,289 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:53:02,300 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:53:04,310 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:53:06,322 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:53:08,332 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:53:10,343 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:53:12,353 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:53:14,364 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:53:16,374 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:53:18,385 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:53:20,397 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:53:22,409 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:53:24,422 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:53:26,433 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:53:28,443 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:53:30,453 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:53:32,463 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:53:34,474 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:53:36,485 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:53:38,497 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:53:40,509 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:53:42,521 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:53:44,531 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:53:46,542 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:53:48,552 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:53:50,562 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:53:51,954 | INFO | proceeding with final server update [2024-05-22 11:54:08] 2024-05-22 15:53:51,954 | INFO | this job has now completed (state=failed) [2024-05-22 11:54:08] 2024-05-22 15:53:51,955 | INFO | pilot will not update the server (heartbeat message will be written to file) [2024-05-22 11:54:08] 2024-05-22 15:53:51,955 | INFO | job 6212073883 has failed - writing final server update [2024-05-22 11:54:08] 2024-05-22 15:53:51,955 | WARNING | making sure that job.state is set to failed since a pilot error code is set [2024-05-22 11:54:08] 2024-05-22 15:53:51,955 | INFO | payload/TRF did not report the number of read events [2024-05-22 11:54:08] 2024-05-22 15:53:51,960 | INFO | executing command: lscpu [2024-05-22 11:54:08] File "/tmp/boinchome/slots/5/pilot3/pilot/common/exception.py", line 450, in run [2024-05-22 11:54:08] self.target(**self.kwargs) [2024-05-22 11:54:08] File "/tmp/boinchome/slots/5/pilot3/pilot/control/job.py", line 2568, in queue_monitor [2024-05-22 11:54:08] update_server(job, args) [2024-05-22 11:54:08] File "/tmp/boinchome/slots/5/pilot3/pilot/control/job.py", line 2617, in update_server [2024-05-22 11:54:08] send_state(job, args, job.state, metadata=metadata) [2024-05-22 11:54:08] File "/tmp/boinchome/slots/5/pilot3/pilot/control/job.py", line 420, in send_state [2024-05-22 11:54:08] data = get_data_structure(job, state, args, xml=xml, metadata=metadata) [2024-05-22 11:54:08] File "/tmp/boinchome/slots/5/pilot3/pilot/control/job.py", line 747, in get_data_structure [2024-05-22 11:54:08] cpumodel = get_cpu_cores(cpumodel) # add the CPU cores if not present [2024-05-22 11:54:08] File "/tmp/boinchome/slots/5/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores [2024-05-22 11:54:08] ec, stdout = lscpu() [2024-05-22 11:54:08] File "/tmp/boinchome/slots/5/pilot3/pilot/util/workernode.py", line 333, in lscpu [2024-05-22 11:54:08] ec, stdout, _ = execute(cmd) [2024-05-22 11:54:08] File "/tmp/boinchome/slots/5/pilot3/pilot/util/container.py", line 94, in execute [2024-05-22 11:54:08] process = subprocess.Popen(exe, [2024-05-22 11:54:08] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__ [2024-05-22 11:54:08] self._execute_child(args, executable, preexec_fn, close_fds, [2024-05-22 11:54:08] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child [2024-05-22 11:54:08] raise child_exception_type(errno_num, err_msg, err_filename) [2024-05-22 11:54:08] exception caught by thread run() function: (<class 'OSError'>, OSError(107, 'Transport endpoint is not connected'), <traceback object at 0x7f972de5ba80>) [2024-05-22 11:54:08] Traceback (most recent call last): [2024-05-22 11:54:08] File "/tmp/boinchome/slots/5/pilot3/pilot/common/exception.py", line 450, in run [2024-05-22 11:54:08] self.target(**self.kwargs) [2024-05-22 11:54:08] File "/tmp/boinchome/slots/5/pilot3/pilot/control/job.py", line 2568, in queue_monitor [2024-05-22 11:54:08] update_server(job, args) [2024-05-22 11:54:08] File "/tmp/boinchome/slots/5/pilot3/pilot/control/job.py", line 2617, in update_server [2024-05-22 11:54:08] send_state(job, args, job.state, metadata=metadata) [2024-05-22 11:54:08] File "/tmp/boinchome/slots/5/pilot3/pilot/control/job.py", line 420, in send_state [2024-05-22 11:54:08] data = get_data_structure(job, state, args, xml=xml, metadata=metadata) [2024-05-22 11:54:08] File "/tmp/boinchome/slots/5/pilot3/pilot/control/job.py", line 747, in get_data_structure [2024-05-22 11:54:08] cpumodel = get_cpu_cores(cpumodel) # add the CPU cores if not present [2024-05-22 11:54:08] File "/tmp/boinchome/slots/5/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores [2024-05-22 11:54:08] ec, stdout = lscpu() [2024-05-22 11:54:08] File "/tmp/boinchome/slots/5/pilot3/pilot/util/workernode.py", line 333, in lscpu [2024-05-22 11:54:08] ec, stdout, _ = execute(cmd) [2024-05-22 11:54:08] File "/tmp/boinchome/slots/5/pilot3/pilot/util/container.py", line 94, in execute [2024-05-22 11:54:08] process = subprocess.Popen(exe, [2024-05-22 11:54:08] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__ [2024-05-22 11:54:08] self._execute_child(args, executable, preexec_fn, close_fds, [2024-05-22 11:54:08] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child [2024-05-22 11:54:08] raise child_exception_type(errno_num, err_msg, err_filename) [2024-05-22 11:54:08] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash' [2024-05-22 11:54:08] [2024-05-22 11:54:08] None [2024-05-22 11:54:08] exception has been put in bucket queue belonging to thread 'queue_monitor' [2024-05-22 11:54:08] setting graceful stop in 10 s since there is no point in continuing [2024-05-22 11:54:08] 2024-05-22 15:53:52,575 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:53:54,585 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:53:56,595 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:53:58,605 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:54:00,615 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140287434729280)>', '<ExcThread(queue_monitor, started 140286709720832)>'] [2024-05-22 11:54:08] 2024-05-22 15:54:02,625 | INFO | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 140287434729280)>']) [2024-05-22 11:54:08] 2024-05-22 15:54:07,651 | INFO | all workflow threads have been joined [2024-05-22 11:54:08] 2024-05-22 15:54:07,651 | INFO | end of generic workflow (traces error code: 0) [2024-05-22 11:54:08] 2024-05-22 15:54:07,652 | INFO | traces error code: 0 [2024-05-22 11:54:08] 2024-05-22 15:54:07,652 | INFO | pilot has finished (exit code=0, shell exit code=0) [2024-05-22 11:54:08] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-05-22 11:54:08] ==== pilot stdout END ==== [2024-05-22 11:54:08] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-05-22 11:54:08] ==== wrapper stdout RESUME ==== [2024-05-22 11:54:08] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-05-22 11:54:08] pilotpid: 284617 [2024-05-22 11:54:08] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-05-22 11:54:08] Pilot exit status: 0 [2024-05-22 11:54:08] ./runpilot2-wrapper.sh: line 949: /usr/bin/cat: Transport endpoint is not connected [2024-05-22 11:54:08] ./runpilot2-wrapper.sh: line 949: /usr/bin/cut: Transport endpoint is not connected [2024-05-22 11:54:08] ./runpilot2-wrapper.sh: line 949: xargs: command not found [2024-05-22 11:54:08] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-05-22 11:54:08] pandaids: [2024-05-22 11:54:08] ./runpilot2-wrapper.sh: line 501: /usr/bin/ps: Transport endpoint is not connected [2024-05-22 11:54:08] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-05-22 11:54:08] No supervise_pilot CHILD process found [2024-05-22 11:54:08] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-05-22 11:54:08] Test setup, not cleaning [2024-05-22 11:54:08] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-05-22 11:54:08] ==== wrapper stdout END ==== [2024-05-22 11:54:08] ./runpilot2-wrapper.sh: line 10: /usr/bin/date: Transport endpoint is not connected [2024-05-22 11:54:08] ==== wrapper stderr END ==== [2024-05-22 11:54:08] ./runpilot2-wrapper.sh: line 522: /usr/bin/date: Transport endpoint is not connected [2024-05-22 11:54:08] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-05-22 11:54:08] apfmon messages muted [2024-05-22 11:54:08] *** Error codes and diagnostics *** [2024-05-22 11:54:08] *** Listing of results directory *** [2024-05-22 11:54:08] total 636008 [2024-05-22 11:54:08] -rw-r--r-- 1 boincer umatlas 5633 May 21 23:50 queuedata.json [2024-05-22 11:54:08] -rw-r--r-- 1 boincer umatlas 467845 May 21 23:50 pilot3.tar.gz [2024-05-22 11:54:08] -rwx------ 1 boincer umatlas 32308 May 21 23:50 runpilot2-wrapper.sh [2024-05-22 11:54:08] -rw-r--r-- 1 boincer umatlas 100 May 22 02:52 wrapper_26015_x86_64-pc-linux-gnu [2024-05-22 11:54:08] -rwxr-xr-x 1 boincer umatlas 7986 May 22 02:52 run_atlas [2024-05-22 11:54:08] -rw-r--r-- 1 boincer umatlas 105 May 22 02:52 job.xml [2024-05-22 11:54:08] -rw-r--r-- 2 boincer umatlas 639563649 May 22 02:53 EVNT.38776170._000153.pool.root.1 [2024-05-22 11:54:08] -rw-r--r-- 2 boincer umatlas 17537 May 22 02:53 start_atlas.sh [2024-05-22 11:54:08] drwxrwx--x 2 boincer umatlas 4096 May 22 02:53 shared [2024-05-22 11:54:08] -rw-r--r-- 2 boincer umatlas 480008 May 22 02:53 input.tar.gz [2024-05-22 11:54:08] -rw-r--r-- 1 boincer umatlas 0 May 22 02:53 boinc_lockfile [2024-05-22 11:54:08] -rw-r--r-- 1 boincer umatlas 2617 May 22 02:53 pandaJob.out [2024-05-22 11:54:08] -rw------- 1 boincer umatlas 424 May 22 02:54 setup.sh.local [2024-05-22 11:54:08] -rw------- 1 boincer umatlas 1011168 May 22 02:55 agis_schedconf.cvmfs.json [2024-05-22 11:54:08] -rw------- 1 boincer umatlas 0 May 22 02:55 agis_ddmendpoints.agis.ALL.json [2024-05-22 11:54:08] -rw------- 1 boincer umatlas 1324700 May 22 02:55 cric_ddmendpoints.json [2024-05-22 11:54:08] drwx------ 4 boincer umatlas 4096 May 22 02:55 pilot3 [2024-05-22 11:54:08] -rw------- 1 boincer umatlas 930 May 22 11:43 heartbeat.json [2024-05-22 11:54:08] -rw-r--r-- 1 boincer umatlas 6299 May 22 11:45 init_data.xml [2024-05-22 11:54:08] -rw------- 1 boincer umatlas 95 May 22 11:51 pilot_heartbeat.json [2024-05-22 11:54:08] -rw------- 1 boincer umatlas 1068 May 22 11:51 memory_monitor_summary.json [2024-05-22 11:54:08] drwxrwx--- 2 boincer umatlas 4096 May 22 11:51 PanDA_Pilot-6212073883 [2024-05-22 11:54:08] -rw-r--r-- 1 boincer umatlas 533 May 22 11:51 boinc_task_state.xml [2024-05-22 11:54:08] -rw-r--r-- 1 boincer umatlas 8192 May 22 11:54 boinc_mmap_file [2024-05-22 11:54:08] -rw------- 1 boincer umatlas 4092773 May 22 11:54 pilotlog.txt [2024-05-22 11:54:08] -rw------- 1 boincer umatlas 4117685 May 22 11:54 log.38920987._006340.job.log.1 [2024-05-22 11:54:08] -rw-r--r-- 1 boincer umatlas 29 May 22 11:54 wrapper_checkpoint.txt [2024-05-22 11:54:08] -rw-r--r-- 1 boincer umatlas 428 May 22 11:54 runtime_log [2024-05-22 11:54:08] -rw------- 1 boincer umatlas 633 May 22 11:54 HINODmjAsT5n9Rq4apoT9bVoABFKDmABFKDmlqFKDm0sPKDmsUm1Hm.diag [2024-05-22 11:54:08] -rw-r--r-- 1 boincer umatlas 11285 May 22 11:54 runtime_log.err [2024-05-22 11:54:08] -rw-r--r-- 1 boincer umatlas 28066 May 22 11:54 stderr.txt [2024-05-22 11:54:08] No HITS result produced [2024-05-22 11:54:08] *** Contents of shared directory: *** [2024-05-22 11:54:08] total 625072 [2024-05-22 11:54:08] -rw-r--r-- 2 boincer umatlas 639563649 May 22 02:53 ATLAS.root_0 [2024-05-22 11:54:08] -rw-r--r-- 2 boincer umatlas 17537 May 22 02:53 start_atlas.sh [2024-05-22 11:54:08] -rw-r--r-- 2 boincer umatlas 480008 May 22 02:53 input.tar.gz 11:54:10 (256990): run_atlas exited; CPU time 105615.557425 11:54:10 (256990): called boinc_finish(0) </stderr_txt> <message> upload failure: <file_xfer_error> <file_name>HINODmjAsT5n9Rq4apoT9bVoABFKDmABFKDmlqFKDm0sPKDmsUm1Hm_0_r1349908348_ATLAS_result</file_name> <error_code>-161 (not found)</error_code> </file_xfer_error> </message> ]]>
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