Name kszMDmfxrT5n9Rq4apoT9bVoABFKDmABFKDmlqFKDmXrPKDmPcGzpm_0
Workunit 223183545
Created 22 May 2024, 3:37:04 UTC
Sent 3 Jun 2024, 23:09:34 UTC
Report deadline 2 May 2026, 6:38:31 UTC
Received 22 May 2024, 8:34:54 UTC
Server state In progress
Outcome Success
Client state Compute error
Exit status 0 (0x00000000)
Computer ID 10795612
Run time 1 hours 39 min
CPU time 2 hours 6 min
Validate state Initial
Credit 0.00
Device peak FLOPS 31.99 GFLOPS
Application version ATLAS Simulation v3.01 (native_mt)
x86_64-pc-linux-gnu
Peak working set size 2.32 GB
Peak swap size 3.12 GB
Peak disk usage 1.21 GB

Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
02:53:53 (69182): wrapper (7.7.26015): starting
02:53:53 (69182): wrapper: running run_atlas (--nthreads 8)
[2024-05-22 02:53:53] Arguments: --nthreads 8
[2024-05-22 02:53:53] Threads: 8
[2024-05-22 02:53:53] Checking for CVMFS
[2024-05-22 02:53:54] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-22 02:53:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-22 02:53:54] Running cvmfs_config stat atlas.cern.ch
[2024-05-22 02:53:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-22 02:53:55] 2.11.2.0 117717 2748 167872 133017 3 366 9827987 18432000 18684 130560 0 370122 95.423 2930156 39583 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2024-05-22 02:53:55] CVMFS is ok
[2024-05-22 02:53:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-22 02:53:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-22 02:53:55] Further information can be found at the LHC@home message board.
[2024-05-22 02:53:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-22 02:53:55] Checking for apptainer binary...
[2024-05-22 02:53:55] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-22 02:53:55] Running /usr/bin/apptainer --version
[2024-05-22 02:53:55] apptainer version 1.3.0-1.el7
[2024-05-22 02:53:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-22 02:54:27] c6-2-11-4.aglt2.org
[2024-05-22 02:54:27] apptainer works
[2024-05-22 02:54:27] Set ATHENA_PROC_NUMBER=8
[2024-05-22 02:54:27] Set ATHENA_CORE_NUMBER=8
[2024-05-22 02:54:27] Starting ATLAS job with PandaID=6212068053
[2024-05-22 02:54:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-22 04:32:50]  *** The last 200 lines of the pilot log: ***
[2024-05-22 04:32:50]     list_work_dir(workdir)
[2024-05-22 04:32:50]   File "/tmp/boinchome/slots/0/pilot3/pilot/user/atlas/common.py", line 2045, in list_work_dir
[2024-05-22 04:32:50]     _, stdout, stderr = execute(cmd)
[2024-05-22 04:32:50]   File "/tmp/boinchome/slots/0/pilot3/pilot/util/container.py", line 94, in execute
[2024-05-22 04:32:50]     process = subprocess.Popen(exe,
[2024-05-22 04:32:50]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-05-22 04:32:50]     self._execute_child(args, executable, preexec_fn, close_fds,
[2024-05-22 04:32:50]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-05-22 04:32:50]     raise child_exception_type(errno_num, err_msg, err_filename)
[2024-05-22 04:32:50] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-05-22 04:32:50] 
[2024-05-22 04:32:50] None
[2024-05-22 04:32:50] exception has been put in bucket queue belonging to thread 'copytool_out'
[2024-05-22 04:32:50] setting graceful stop in 10 s since there is no point in continuing
[2024-05-22 04:32:50] 2024-05-22 08:30:06,574 | WARNING  | thread 'copytool_out' received an exception from bucket: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-05-22 04:32:50] 2024-05-22 08:30:06,578 | INFO     | monitor loop #419: job 0:6212068053 is in state 'failed'
[2024-05-22 04:32:50] 2024-05-22 08:30:06,578 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2024-05-22 04:32:50] 2024-05-22 08:30:09,084 | INFO     | monitor loop #420: job 0:6212068053 is in state 'failed'
[2024-05-22 04:32:50] 2024-05-22 08:30:09,084 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2024-05-22 04:32:50] 2024-05-22 08:30:11,589 | INFO     | monitor loop #421: job 0:6212068053 is in state 'failed'
[2024-05-22 04:32:50] 2024-05-22 08:30:11,589 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2024-05-22 04:32:50] 2024-05-22 08:30:14,096 | INFO     | monitor loop #422: job 0:6212068053 is in state 'failed'
[2024-05-22 04:32:50] 2024-05-22 08:30:14,096 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2024-05-22 04:32:50] 2024-05-22 08:30:15,930 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-22 04:32:50] 2024-05-22 08:30:15,930 | INFO     | found 1 job(s) in 20 queues
[2024-05-22 04:32:50] 2024-05-22 08:30:15,930 | INFO     | aborting job 6212068053
[2024-05-22 04:32:50] 2024-05-22 08:30:15,947 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-22 04:32:50] 2024-05-22 08:30:15,947 | INFO     | aborting loop
[2024-05-22 04:32:50] 2024-05-22 08:30:15,947 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-22 04:32:50] 2024-05-22 08:30:15,947 | WARNING  | since job:queue_monitor is responsible for sending job updates, we sleep for 20 s
[2024-05-22 04:32:50] 2024-05-22 08:30:16,076 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-22 04:32:50] 2024-05-22 08:30:16,076 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-22 04:32:50] 2024-05-22 08:30:16,385 | INFO     | all data control threads have been joined
[2024-05-22 04:32:50] 2024-05-22 08:30:16,658 | INFO     | all job control threads have been joined
[2024-05-22 04:32:50] 2024-05-22 08:30:16,953 | INFO     | [job] job monitor thread has finished
[2024-05-22 04:32:50] 2024-05-22 08:30:17,020 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-22 04:32:50] 2024-05-22 08:30:17,129 | INFO     | all payload control threads have been joined
[2024-05-22 04:32:50] 2024-05-22 08:30:17,138 | INFO     | [job] create_data_payload thread has finished
[2024-05-22 04:32:50] 2024-05-22 08:30:17,391 | INFO     | [data] control thread has finished
[2024-05-22 04:32:50] 2024-05-22 08:30:17,584 | INFO     | [job] validate thread has finished
[2024-05-22 04:32:50] 2024-05-22 08:30:17,624 | INFO     | [data] copytool_in thread has finished
[2024-05-22 04:32:50] 2024-05-22 08:30:17,666 | INFO     | [job] control thread has finished
[2024-05-22 04:32:50] 2024-05-22 08:30:18,111 | INFO     | [payload] failed_post thread has finished
[2024-05-22 04:32:50] 2024-05-22 08:30:18,136 | INFO     | [payload] control thread has finished
[2024-05-22 04:32:50] 2024-05-22 08:30:18,230 | INFO     | [payload] validate_pre thread has finished
[2024-05-22 04:32:50] 2024-05-22 08:30:18,313 | INFO     | [job] retrieve thread has finished
[2024-05-22 04:32:50] 2024-05-22 08:30:18,403 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-22 04:32:50] 2024-05-22 08:30:18,414 | INFO     | [payload] validate_post thread has finished
[2024-05-22 04:32:50] 2024-05-22 08:30:21,862 | INFO     | [payload] execute_payloads thread has finished
[2024-05-22 04:32:50] 2024-05-22 08:30:22,411 | INFO     | [data] queue_monitor thread has finished
[2024-05-22 04:32:50] 2024-05-22 08:30:37,049 | INFO     | job 6212068053 has state=failed
[2024-05-22 04:32:50] 2024-05-22 08:30:37,049 | INFO     | preparing for final server update for job 6212068053 in state='failed'
[2024-05-22 04:32:50] 2024-05-22 08:30:37,200 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-22 04:32:50] 2024-05-22 08:30:37,200 | INFO     | [monitor] control thread has ended
[2024-05-22 04:32:50] 2024-05-22 08:30:39,140 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:30:41,152 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:30:43,164 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:30:45,176 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:30:47,188 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:30:49,199 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:30:51,212 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:30:53,224 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:30:55,236 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:30:57,245 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:30:59,260 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:31:01,271 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:31:03,285 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:31:05,297 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:31:07,307 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:31:09,320 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:31:11,331 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:31:13,343 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:31:15,353 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:31:17,367 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:31:19,380 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:31:21,392 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:31:23,406 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:31:25,417 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:31:27,427 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:31:29,437 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:31:31,449 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:31:33,459 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:31:35,470 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:31:37,480 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:31:39,491 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:31:41,501 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:31:43,513 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:31:45,524 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:31:47,536 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:31:49,548 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:31:51,559 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:31:53,570 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:31:55,581 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:31:57,592 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:31:59,602 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:32:01,612 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:32:03,624 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:32:05,634 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:32:07,643 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:32:09,654 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:32:11,665 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:32:13,676 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:32:15,687 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:32:17,697 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:32:19,707 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:32:21,717 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:32:23,727 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:32:25,735 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:32:27,745 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:32:29,755 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:32:31,765 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:32:32,215 | INFO     | proceeding with final server update
[2024-05-22 04:32:50] 2024-05-22 08:32:32,215 | INFO     | this job has now completed (state=failed)
[2024-05-22 04:32:50] 2024-05-22 08:32:32,215 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-22 04:32:50] 2024-05-22 08:32:32,216 | INFO     | job 6212068053 has failed - writing final server update
[2024-05-22 04:32:50] 2024-05-22 08:32:32,216 | WARNING  | making sure that job.state is set to failed since a pilot error code is set
[2024-05-22 04:32:50] 2024-05-22 08:32:32,216 | INFO     | payload/TRF did not report the number of read events
[2024-05-22 04:32:50] 2024-05-22 08:32:32,219 | INFO     | executing command: lscpu
[2024-05-22 04:32:50]   File "/tmp/boinchome/slots/0/pilot3/pilot/common/exception.py", line 450, in run
[2024-05-22 04:32:50]     self.target(**self.kwargs)
[2024-05-22 04:32:50]   File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 2568, in queue_monitor
[2024-05-22 04:32:50]     update_server(job, args)
[2024-05-22 04:32:50]   File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 2617, in update_server
[2024-05-22 04:32:50]     send_state(job, args, job.state, metadata=metadata)
[2024-05-22 04:32:50]   File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 420, in send_state
[2024-05-22 04:32:50]     data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2024-05-22 04:32:50]   File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 747, in get_data_structure
[2024-05-22 04:32:50]     cpumodel = get_cpu_cores(cpumodel)  # add the CPU cores if not present
[2024-05-22 04:32:50]   File "/tmp/boinchome/slots/0/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores
[2024-05-22 04:32:50]     ec, stdout = lscpu()
[2024-05-22 04:32:50]   File "/tmp/boinchome/slots/0/pilot3/pilot/util/workernode.py", line 333, in lscpu
[2024-05-22 04:32:50]     ec, stdout, _ = execute(cmd)
[2024-05-22 04:32:50]   File "/tmp/boinchome/slots/0/pilot3/pilot/util/container.py", line 94, in execute
[2024-05-22 04:32:50]     process = subprocess.Popen(exe,
[2024-05-22 04:32:50]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-05-22 04:32:50]     self._execute_child(args, executable, preexec_fn, close_fds,
[2024-05-22 04:32:50]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-05-22 04:32:50]     raise child_exception_type(errno_num, err_msg, err_filename)
[2024-05-22 04:32:50] exception caught by thread run() function: (<class 'OSError'>, OSError(107, 'Transport endpoint is not connected'), <traceback object at 0x7f9383cfe500>)
[2024-05-22 04:32:50] Traceback (most recent call last):
[2024-05-22 04:32:50]   File "/tmp/boinchome/slots/0/pilot3/pilot/common/exception.py", line 450, in run
[2024-05-22 04:32:50]     self.target(**self.kwargs)
[2024-05-22 04:32:50]   File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 2568, in queue_monitor
[2024-05-22 04:32:50]     update_server(job, args)
[2024-05-22 04:32:50]   File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 2617, in update_server
[2024-05-22 04:32:50]     send_state(job, args, job.state, metadata=metadata)
[2024-05-22 04:32:50]   File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 420, in send_state
[2024-05-22 04:32:50]     data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2024-05-22 04:32:50]   File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 747, in get_data_structure
[2024-05-22 04:32:50]     cpumodel = get_cpu_cores(cpumodel)  # add the CPU cores if not present
[2024-05-22 04:32:50]   File "/tmp/boinchome/slots/0/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores
[2024-05-22 04:32:50]     ec, stdout = lscpu()
[2024-05-22 04:32:50]   File "/tmp/boinchome/slots/0/pilot3/pilot/util/workernode.py", line 333, in lscpu
[2024-05-22 04:32:50]     ec, stdout, _ = execute(cmd)
[2024-05-22 04:32:50]   File "/tmp/boinchome/slots/0/pilot3/pilot/util/container.py", line 94, in execute
[2024-05-22 04:32:50]     process = subprocess.Popen(exe,
[2024-05-22 04:32:50]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-05-22 04:32:50]     self._execute_child(args, executable, preexec_fn, close_fds,
[2024-05-22 04:32:50]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-05-22 04:32:50]     raise child_exception_type(errno_num, err_msg, err_filename)
[2024-05-22 04:32:50] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-05-22 04:32:50] 
[2024-05-22 04:32:50] None
[2024-05-22 04:32:50] exception has been put in bucket queue belonging to thread 'queue_monitor'
[2024-05-22 04:32:50] setting graceful stop in 10 s since there is no point in continuing
[2024-05-22 04:32:50] 2024-05-22 08:32:33,775 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:32:35,786 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:32:37,796 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:32:39,806 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:32:41,816 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>']
[2024-05-22 04:32:50] 2024-05-22 08:32:43,825 | INFO     | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 140271690143552)>'])
[2024-05-22 04:32:50] 2024-05-22 08:32:48,850 | INFO     | all workflow threads have been joined
[2024-05-22 04:32:50] 2024-05-22 08:32:48,851 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-22 04:32:50] 2024-05-22 08:32:48,851 | INFO     | traces error code: 0
[2024-05-22 04:32:50] 2024-05-22 08:32:48,851 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-22 04:32:50] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-05-22 04:32:50]  ==== pilot stdout END ====
[2024-05-22 04:32:50] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-05-22 04:32:50]  ==== wrapper stdout RESUME ====
[2024-05-22 04:32:50] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-05-22 04:32:50]  pilotpid: 102147
[2024-05-22 04:32:50] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-05-22 04:32:50]  Pilot exit status: 135
[2024-05-22 04:32:50] ./runpilot2-wrapper.sh: line 949: /usr/bin/cat: Transport endpoint is not connected
[2024-05-22 04:32:50] ./runpilot2-wrapper.sh: line 949: xargs: command not found
[2024-05-22 04:32:50] ./runpilot2-wrapper.sh: line 949: /usr/bin/cut: Transport endpoint is not connected
[2024-05-22 04:32:50] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-05-22 04:32:50]  pandaids: 
[2024-05-22 04:32:50] ./runpilot2-wrapper.sh: line 501: /usr/bin/ps: Transport endpoint is not connected
[2024-05-22 04:32:50] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-05-22 04:32:50]  No supervise_pilot CHILD process found
[2024-05-22 04:32:50] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-05-22 04:32:50]  Test setup, not cleaning
[2024-05-22 04:32:50] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-05-22 04:32:50]  ==== wrapper stdout END ====
[2024-05-22 04:32:50] ./runpilot2-wrapper.sh: line 10: /usr/bin/date: Transport endpoint is not connected
[2024-05-22 04:32:50]  ==== wrapper stderr END ====
[2024-05-22 04:32:50] ./runpilot2-wrapper.sh: line 522: /usr/bin/date: Transport endpoint is not connected
[2024-05-22 04:32:50] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-05-22 04:32:50]  apfmon messages muted
[2024-05-22 04:32:50]  *** Error codes and diagnostics ***
[2024-05-22 04:32:50]  *** Listing of results directory ***
[2024-05-22 04:32:50] total 623868
[2024-05-22 04:32:50] -rw-r--r-- 1 boincer umatlas    467845 May 21 23:27 pilot3.tar.gz
[2024-05-22 04:32:50] -rw-r--r-- 1 boincer umatlas      5633 May 21 23:35 queuedata.json
[2024-05-22 04:32:50] -rwx------ 1 boincer umatlas     32308 May 21 23:36 runpilot2-wrapper.sh
[2024-05-22 04:32:50] -rw-r--r-- 1 boincer umatlas       100 May 22 02:53 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-22 04:32:50] -rwxr-xr-x 1 boincer umatlas      7986 May 22 02:53 run_atlas
[2024-05-22 04:32:50] -rw-r--r-- 1 boincer umatlas       105 May 22 02:53 job.xml
[2024-05-22 04:32:50] -rw-r--r-- 2 boincer umatlas 634349631 May 22 02:53 EVNT.38776160._000190.pool.root.1
[2024-05-22 04:32:50] -rw-r--r-- 2 boincer umatlas     17537 May 22 02:53 start_atlas.sh
[2024-05-22 04:32:50] drwxrwx--x 2 boincer umatlas      4096 May 22 02:53 shared
[2024-05-22 04:32:50] -rw-r--r-- 2 boincer umatlas    480005 May 22 02:53 input.tar.gz
[2024-05-22 04:32:50] -rw-r--r-- 1 boincer umatlas         0 May 22 02:53 boinc_lockfile
[2024-05-22 04:32:50] -rw-r--r-- 1 boincer umatlas      2627 May 22 02:54 pandaJob.out
[2024-05-22 04:32:50] -rw------- 1 boincer umatlas       424 May 22 02:54 setup.sh.local
[2024-05-22 04:32:50] -rw------- 1 boincer umatlas   1011168 May 22 02:56 agis_schedconf.cvmfs.json
[2024-05-22 04:32:50] -rw------- 1 boincer umatlas         0 May 22 02:56 agis_ddmendpoints.agis.ALL.json
[2024-05-22 04:32:50] -rw------- 1 boincer umatlas   1324700 May 22 02:56 cric_ddmendpoints.json
[2024-05-22 04:32:50] drwx------ 4 boincer umatlas      4096 May 22 02:56 pilot3
[2024-05-22 04:32:50] -rw------- 1 boincer umatlas       929 May 22 03:59 heartbeat.json
[2024-05-22 04:32:50] -rw------- 1 boincer umatlas        95 May 22 04:29 pilot_heartbeat.json
[2024-05-22 04:32:50] -rw-r--r-- 1 boincer umatlas       529 May 22 04:29 boinc_task_state.xml
[2024-05-22 04:32:50] -rw------- 1 boincer umatlas      1052 May 22 04:30 memory_monitor_summary.json
[2024-05-22 04:32:50] drwxrwx--- 2 boincer umatlas      4096 May 22 04:30 PanDA_Pilot-6212068053
[2024-05-22 04:32:50] -rw-r--r-- 1 boincer umatlas      6297 May 22 04:31 init_data.xml
[2024-05-22 04:32:50] -rw-r--r-- 1 boincer umatlas      8192 May 22 04:32 boinc_mmap_file
[2024-05-22 04:32:50] -rw-r--r-- 1 boincer umatlas        26 May 22 04:32 wrapper_checkpoint.txt
[2024-05-22 04:32:50] -rw------- 1 boincer umatlas    484721 May 22 04:32 pilotlog.txt
[2024-05-22 04:32:50] -rw------- 1 boincer umatlas    508496 May 22 04:32 log.38920982._007135.job.log.1
[2024-05-22 04:32:50] -rw-r--r-- 1 boincer umatlas       428 May 22 04:32 runtime_log
[2024-05-22 04:32:50] -rw------- 1 boincer umatlas       626 May 22 04:32 kszMDmfxrT5n9Rq4apoT9bVoABFKDmABFKDmlqFKDmXrPKDmPcGzpm.diag
[2024-05-22 04:32:50] -rw-r--r-- 1 boincer umatlas     11287 May 22 04:32 runtime_log.err
[2024-05-22 04:32:50] -rw-r--r-- 1 boincer umatlas     28077 May 22 04:32 stderr.txt
[2024-05-22 04:32:50] No HITS result produced
[2024-05-22 04:32:50]  *** Contents of shared directory: ***
[2024-05-22 04:32:50] total 619980
[2024-05-22 04:32:50] -rw-r--r-- 2 boincer umatlas 634349631 May 22 02:53 ATLAS.root_0
[2024-05-22 04:32:50] -rw-r--r-- 2 boincer umatlas     17537 May 22 02:53 start_atlas.sh
[2024-05-22 04:32:50] -rw-r--r-- 2 boincer umatlas    480005 May 22 02:53 input.tar.gz
04:32:51 (69182): run_atlas exited; CPU time 7560.304673
04:32:51 (69182): called boinc_finish(0)

</stderr_txt>
<message>
upload failure: <file_xfer_error>
  <file_name>kszMDmfxrT5n9Rq4apoT9bVoABFKDmABFKDmlqFKDmXrPKDmPcGzpm_0_r189011282_ATLAS_result</file_name>
  <error_code>-161 (not found)</error_code>
</file_xfer_error>

</message>
]]>


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