| Name | kszMDmfxrT5n9Rq4apoT9bVoABFKDmABFKDmlqFKDmXrPKDmPcGzpm_0 |
| Workunit | 223183545 |
| Created | 22 May 2024, 3:37:04 UTC |
| Sent | 3 Jun 2024, 23:09:34 UTC |
| Report deadline | 2 May 2026, 6:38:31 UTC |
| Received | 22 May 2024, 8:34:54 UTC |
| Server state | In progress |
| Outcome | Success |
| Client state | Compute error |
| Exit status | 0 (0x00000000) |
| Computer ID | 10795612 |
| Run time | 1 hours 39 min |
| CPU time | 2 hours 6 min |
| Validate state | Initial |
| Credit | 0.00 |
| Device peak FLOPS | 31.99 GFLOPS |
| Application version | ATLAS Simulation v3.01 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 2.32 GB |
| Peak swap size | 3.12 GB |
| Peak disk usage | 1.21 GB |
Stderr output
<core_client_version>7.7.0</core_client_version> <![CDATA[ <stderr_txt> 02:53:53 (69182): wrapper (7.7.26015): starting 02:53:53 (69182): wrapper: running run_atlas (--nthreads 8) [2024-05-22 02:53:53] Arguments: --nthreads 8 [2024-05-22 02:53:53] Threads: 8 [2024-05-22 02:53:53] Checking for CVMFS [2024-05-22 02:53:54] Probing /cvmfs/atlas.cern.ch... OK [2024-05-22 02:53:54] Probing /cvmfs/atlas-condb.cern.ch... OK [2024-05-22 02:53:54] Running cvmfs_config stat atlas.cern.ch [2024-05-22 02:53:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE [2024-05-22 02:53:55] 2.11.2.0 117717 2748 167872 133017 3 366 9827987 18432000 18684 130560 0 370122 95.423 2930156 39583 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1 [2024-05-22 02:53:55] CVMFS is ok [2024-05-22 02:53:55] Efficiency of ATLAS tasks can be improved by the following measure(s): [2024-05-22 02:53:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io. [2024-05-22 02:53:55] Further information can be found at the LHC@home message board. [2024-05-22 02:53:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 [2024-05-22 02:53:55] Checking for apptainer binary... [2024-05-22 02:53:55] Using apptainer found in PATH at /usr/bin/apptainer [2024-05-22 02:53:55] Running /usr/bin/apptainer --version [2024-05-22 02:53:55] apptainer version 1.3.0-1.el7 [2024-05-22 02:53:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname [2024-05-22 02:54:27] c6-2-11-4.aglt2.org [2024-05-22 02:54:27] apptainer works [2024-05-22 02:54:27] Set ATHENA_PROC_NUMBER=8 [2024-05-22 02:54:27] Set ATHENA_CORE_NUMBER=8 [2024-05-22 02:54:27] Starting ATLAS job with PandaID=6212068053 [2024-05-22 02:54:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh [2024-05-22 04:32:50] *** The last 200 lines of the pilot log: *** [2024-05-22 04:32:50] list_work_dir(workdir) [2024-05-22 04:32:50] File "/tmp/boinchome/slots/0/pilot3/pilot/user/atlas/common.py", line 2045, in list_work_dir [2024-05-22 04:32:50] _, stdout, stderr = execute(cmd) [2024-05-22 04:32:50] File "/tmp/boinchome/slots/0/pilot3/pilot/util/container.py", line 94, in execute [2024-05-22 04:32:50] process = subprocess.Popen(exe, [2024-05-22 04:32:50] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__ [2024-05-22 04:32:50] self._execute_child(args, executable, preexec_fn, close_fds, [2024-05-22 04:32:50] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child [2024-05-22 04:32:50] raise child_exception_type(errno_num, err_msg, err_filename) [2024-05-22 04:32:50] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash' [2024-05-22 04:32:50] [2024-05-22 04:32:50] None [2024-05-22 04:32:50] exception has been put in bucket queue belonging to thread 'copytool_out' [2024-05-22 04:32:50] setting graceful stop in 10 s since there is no point in continuing [2024-05-22 04:32:50] 2024-05-22 08:30:06,574 | WARNING | thread 'copytool_out' received an exception from bucket: [Errno 107] Transport endpoint is not connected: '/bin/bash' [2024-05-22 04:32:50] 2024-05-22 08:30:06,578 | INFO | monitor loop #419: job 0:6212068053 is in state 'failed' [2024-05-22 04:32:50] 2024-05-22 08:30:06,578 | INFO | will abort job monitoring soon since job state=failed (job is still in queue) [2024-05-22 04:32:50] 2024-05-22 08:30:09,084 | INFO | monitor loop #420: job 0:6212068053 is in state 'failed' [2024-05-22 04:32:50] 2024-05-22 08:30:09,084 | INFO | will abort job monitoring soon since job state=failed (job is still in queue) [2024-05-22 04:32:50] 2024-05-22 08:30:11,589 | INFO | monitor loop #421: job 0:6212068053 is in state 'failed' [2024-05-22 04:32:50] 2024-05-22 08:30:11,589 | INFO | will abort job monitoring soon since job state=failed (job is still in queue) [2024-05-22 04:32:50] 2024-05-22 08:30:14,096 | INFO | monitor loop #422: job 0:6212068053 is in state 'failed' [2024-05-22 04:32:50] 2024-05-22 08:30:14,096 | INFO | will abort job monitoring soon since job state=failed (job is still in queue) [2024-05-22 04:32:50] 2024-05-22 08:30:15,930 | WARNING | aborting monitor loop since graceful_stop has been set (timing out remaining threads) [2024-05-22 04:32:50] 2024-05-22 08:30:15,930 | INFO | found 1 job(s) in 20 queues [2024-05-22 04:32:50] 2024-05-22 08:30:15,930 | INFO | aborting job 6212068053 [2024-05-22 04:32:50] 2024-05-22 08:30:15,947 | WARNING | job:job_monitor:received graceful stop - abort after this iteration [2024-05-22 04:32:50] 2024-05-22 08:30:15,947 | INFO | aborting loop [2024-05-22 04:32:50] 2024-05-22 08:30:15,947 | WARNING | job:queue_monitor:received graceful stop - abort after this iteration [2024-05-22 04:32:50] 2024-05-22 08:30:15,947 | WARNING | since job:queue_monitor is responsible for sending job updates, we sleep for 20 s [2024-05-22 04:32:50] 2024-05-22 08:30:16,076 | WARNING | pilot monitor received instruction that args.graceful_stop has been set [2024-05-22 04:32:50] 2024-05-22 08:30:16,076 | WARNING | will wait for a maximum of 300 s for threads to finish [2024-05-22 04:32:50] 2024-05-22 08:30:16,385 | INFO | all data control threads have been joined [2024-05-22 04:32:50] 2024-05-22 08:30:16,658 | INFO | all job control threads have been joined [2024-05-22 04:32:50] 2024-05-22 08:30:16,953 | INFO | [job] job monitor thread has finished [2024-05-22 04:32:50] 2024-05-22 08:30:17,020 | INFO | [payload] run_realtimelog thread has finished [2024-05-22 04:32:50] 2024-05-22 08:30:17,129 | INFO | all payload control threads have been joined [2024-05-22 04:32:50] 2024-05-22 08:30:17,138 | INFO | [job] create_data_payload thread has finished [2024-05-22 04:32:50] 2024-05-22 08:30:17,391 | INFO | [data] control thread has finished [2024-05-22 04:32:50] 2024-05-22 08:30:17,584 | INFO | [job] validate thread has finished [2024-05-22 04:32:50] 2024-05-22 08:30:17,624 | INFO | [data] copytool_in thread has finished [2024-05-22 04:32:50] 2024-05-22 08:30:17,666 | INFO | [job] control thread has finished [2024-05-22 04:32:50] 2024-05-22 08:30:18,111 | INFO | [payload] failed_post thread has finished [2024-05-22 04:32:50] 2024-05-22 08:30:18,136 | INFO | [payload] control thread has finished [2024-05-22 04:32:50] 2024-05-22 08:30:18,230 | INFO | [payload] validate_pre thread has finished [2024-05-22 04:32:50] 2024-05-22 08:30:18,313 | INFO | [job] retrieve thread has finished [2024-05-22 04:32:50] 2024-05-22 08:30:18,403 | WARNING | data:queue_monitoring:received graceful stop - abort after this iteration [2024-05-22 04:32:50] 2024-05-22 08:30:18,414 | INFO | [payload] validate_post thread has finished [2024-05-22 04:32:50] 2024-05-22 08:30:21,862 | INFO | [payload] execute_payloads thread has finished [2024-05-22 04:32:50] 2024-05-22 08:30:22,411 | INFO | [data] queue_monitor thread has finished [2024-05-22 04:32:50] 2024-05-22 08:30:37,049 | INFO | job 6212068053 has state=failed [2024-05-22 04:32:50] 2024-05-22 08:30:37,049 | INFO | preparing for final server update for job 6212068053 in state='failed' [2024-05-22 04:32:50] 2024-05-22 08:30:37,200 | WARNING | job_aborted has been set - aborting pilot monitoring [2024-05-22 04:32:50] 2024-05-22 08:30:37,200 | INFO | [monitor] control thread has ended [2024-05-22 04:32:50] 2024-05-22 08:30:39,140 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:30:41,152 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:30:43,164 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:30:45,176 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:30:47,188 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:30:49,199 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:30:51,212 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:30:53,224 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:30:55,236 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:30:57,245 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:30:59,260 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:31:01,271 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:31:03,285 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:31:05,297 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:31:07,307 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:31:09,320 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:31:11,331 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:31:13,343 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:31:15,353 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:31:17,367 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:31:19,380 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:31:21,392 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:31:23,406 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:31:25,417 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:31:27,427 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:31:29,437 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:31:31,449 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:31:33,459 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:31:35,470 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:31:37,480 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:31:39,491 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:31:41,501 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:31:43,513 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:31:45,524 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:31:47,536 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:31:49,548 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:31:51,559 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:31:53,570 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:31:55,581 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:31:57,592 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:31:59,602 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:32:01,612 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:32:03,624 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:32:05,634 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:32:07,643 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:32:09,654 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:32:11,665 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:32:13,676 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:32:15,687 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:32:17,697 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:32:19,707 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:32:21,717 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:32:23,727 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:32:25,735 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:32:27,745 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:32:29,755 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:32:31,765 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:32:32,215 | INFO | proceeding with final server update [2024-05-22 04:32:50] 2024-05-22 08:32:32,215 | INFO | this job has now completed (state=failed) [2024-05-22 04:32:50] 2024-05-22 08:32:32,215 | INFO | pilot will not update the server (heartbeat message will be written to file) [2024-05-22 04:32:50] 2024-05-22 08:32:32,216 | INFO | job 6212068053 has failed - writing final server update [2024-05-22 04:32:50] 2024-05-22 08:32:32,216 | WARNING | making sure that job.state is set to failed since a pilot error code is set [2024-05-22 04:32:50] 2024-05-22 08:32:32,216 | INFO | payload/TRF did not report the number of read events [2024-05-22 04:32:50] 2024-05-22 08:32:32,219 | INFO | executing command: lscpu [2024-05-22 04:32:50] File "/tmp/boinchome/slots/0/pilot3/pilot/common/exception.py", line 450, in run [2024-05-22 04:32:50] self.target(**self.kwargs) [2024-05-22 04:32:50] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 2568, in queue_monitor [2024-05-22 04:32:50] update_server(job, args) [2024-05-22 04:32:50] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 2617, in update_server [2024-05-22 04:32:50] send_state(job, args, job.state, metadata=metadata) [2024-05-22 04:32:50] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 420, in send_state [2024-05-22 04:32:50] data = get_data_structure(job, state, args, xml=xml, metadata=metadata) [2024-05-22 04:32:50] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 747, in get_data_structure [2024-05-22 04:32:50] cpumodel = get_cpu_cores(cpumodel) # add the CPU cores if not present [2024-05-22 04:32:50] File "/tmp/boinchome/slots/0/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores [2024-05-22 04:32:50] ec, stdout = lscpu() [2024-05-22 04:32:50] File "/tmp/boinchome/slots/0/pilot3/pilot/util/workernode.py", line 333, in lscpu [2024-05-22 04:32:50] ec, stdout, _ = execute(cmd) [2024-05-22 04:32:50] File "/tmp/boinchome/slots/0/pilot3/pilot/util/container.py", line 94, in execute [2024-05-22 04:32:50] process = subprocess.Popen(exe, [2024-05-22 04:32:50] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__ [2024-05-22 04:32:50] self._execute_child(args, executable, preexec_fn, close_fds, [2024-05-22 04:32:50] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child [2024-05-22 04:32:50] raise child_exception_type(errno_num, err_msg, err_filename) [2024-05-22 04:32:50] exception caught by thread run() function: (<class 'OSError'>, OSError(107, 'Transport endpoint is not connected'), <traceback object at 0x7f9383cfe500>) [2024-05-22 04:32:50] Traceback (most recent call last): [2024-05-22 04:32:50] File "/tmp/boinchome/slots/0/pilot3/pilot/common/exception.py", line 450, in run [2024-05-22 04:32:50] self.target(**self.kwargs) [2024-05-22 04:32:50] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 2568, in queue_monitor [2024-05-22 04:32:50] update_server(job, args) [2024-05-22 04:32:50] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 2617, in update_server [2024-05-22 04:32:50] send_state(job, args, job.state, metadata=metadata) [2024-05-22 04:32:50] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 420, in send_state [2024-05-22 04:32:50] data = get_data_structure(job, state, args, xml=xml, metadata=metadata) [2024-05-22 04:32:50] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 747, in get_data_structure [2024-05-22 04:32:50] cpumodel = get_cpu_cores(cpumodel) # add the CPU cores if not present [2024-05-22 04:32:50] File "/tmp/boinchome/slots/0/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores [2024-05-22 04:32:50] ec, stdout = lscpu() [2024-05-22 04:32:50] File "/tmp/boinchome/slots/0/pilot3/pilot/util/workernode.py", line 333, in lscpu [2024-05-22 04:32:50] ec, stdout, _ = execute(cmd) [2024-05-22 04:32:50] File "/tmp/boinchome/slots/0/pilot3/pilot/util/container.py", line 94, in execute [2024-05-22 04:32:50] process = subprocess.Popen(exe, [2024-05-22 04:32:50] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__ [2024-05-22 04:32:50] self._execute_child(args, executable, preexec_fn, close_fds, [2024-05-22 04:32:50] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child [2024-05-22 04:32:50] raise child_exception_type(errno_num, err_msg, err_filename) [2024-05-22 04:32:50] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash' [2024-05-22 04:32:50] [2024-05-22 04:32:50] None [2024-05-22 04:32:50] exception has been put in bucket queue belonging to thread 'queue_monitor' [2024-05-22 04:32:50] setting graceful stop in 10 s since there is no point in continuing [2024-05-22 04:32:50] 2024-05-22 08:32:33,775 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:32:35,786 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:32:37,796 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:32:39,806 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:32:41,816 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140271690143552)>', '<ExcThread(queue_monitor, started 140271257896704)>'] [2024-05-22 04:32:50] 2024-05-22 08:32:43,825 | INFO | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 140271690143552)>']) [2024-05-22 04:32:50] 2024-05-22 08:32:48,850 | INFO | all workflow threads have been joined [2024-05-22 04:32:50] 2024-05-22 08:32:48,851 | INFO | end of generic workflow (traces error code: 0) [2024-05-22 04:32:50] 2024-05-22 08:32:48,851 | INFO | traces error code: 0 [2024-05-22 04:32:50] 2024-05-22 08:32:48,851 | INFO | pilot has finished (exit code=0, shell exit code=0) [2024-05-22 04:32:50] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-05-22 04:32:50] ==== pilot stdout END ==== [2024-05-22 04:32:50] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-05-22 04:32:50] ==== wrapper stdout RESUME ==== [2024-05-22 04:32:50] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-05-22 04:32:50] pilotpid: 102147 [2024-05-22 04:32:50] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-05-22 04:32:50] Pilot exit status: 135 [2024-05-22 04:32:50] ./runpilot2-wrapper.sh: line 949: /usr/bin/cat: Transport endpoint is not connected [2024-05-22 04:32:50] ./runpilot2-wrapper.sh: line 949: xargs: command not found [2024-05-22 04:32:50] ./runpilot2-wrapper.sh: line 949: /usr/bin/cut: Transport endpoint is not connected [2024-05-22 04:32:50] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-05-22 04:32:50] pandaids: [2024-05-22 04:32:50] ./runpilot2-wrapper.sh: line 501: /usr/bin/ps: Transport endpoint is not connected [2024-05-22 04:32:50] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-05-22 04:32:50] No supervise_pilot CHILD process found [2024-05-22 04:32:50] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-05-22 04:32:50] Test setup, not cleaning [2024-05-22 04:32:50] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-05-22 04:32:50] ==== wrapper stdout END ==== [2024-05-22 04:32:50] ./runpilot2-wrapper.sh: line 10: /usr/bin/date: Transport endpoint is not connected [2024-05-22 04:32:50] ==== wrapper stderr END ==== [2024-05-22 04:32:50] ./runpilot2-wrapper.sh: line 522: /usr/bin/date: Transport endpoint is not connected [2024-05-22 04:32:50] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-05-22 04:32:50] apfmon messages muted [2024-05-22 04:32:50] *** Error codes and diagnostics *** [2024-05-22 04:32:50] *** Listing of results directory *** [2024-05-22 04:32:50] total 623868 [2024-05-22 04:32:50] -rw-r--r-- 1 boincer umatlas 467845 May 21 23:27 pilot3.tar.gz [2024-05-22 04:32:50] -rw-r--r-- 1 boincer umatlas 5633 May 21 23:35 queuedata.json [2024-05-22 04:32:50] -rwx------ 1 boincer umatlas 32308 May 21 23:36 runpilot2-wrapper.sh [2024-05-22 04:32:50] -rw-r--r-- 1 boincer umatlas 100 May 22 02:53 wrapper_26015_x86_64-pc-linux-gnu [2024-05-22 04:32:50] -rwxr-xr-x 1 boincer umatlas 7986 May 22 02:53 run_atlas [2024-05-22 04:32:50] -rw-r--r-- 1 boincer umatlas 105 May 22 02:53 job.xml [2024-05-22 04:32:50] -rw-r--r-- 2 boincer umatlas 634349631 May 22 02:53 EVNT.38776160._000190.pool.root.1 [2024-05-22 04:32:50] -rw-r--r-- 2 boincer umatlas 17537 May 22 02:53 start_atlas.sh [2024-05-22 04:32:50] drwxrwx--x 2 boincer umatlas 4096 May 22 02:53 shared [2024-05-22 04:32:50] -rw-r--r-- 2 boincer umatlas 480005 May 22 02:53 input.tar.gz [2024-05-22 04:32:50] -rw-r--r-- 1 boincer umatlas 0 May 22 02:53 boinc_lockfile [2024-05-22 04:32:50] -rw-r--r-- 1 boincer umatlas 2627 May 22 02:54 pandaJob.out [2024-05-22 04:32:50] -rw------- 1 boincer umatlas 424 May 22 02:54 setup.sh.local [2024-05-22 04:32:50] -rw------- 1 boincer umatlas 1011168 May 22 02:56 agis_schedconf.cvmfs.json [2024-05-22 04:32:50] -rw------- 1 boincer umatlas 0 May 22 02:56 agis_ddmendpoints.agis.ALL.json [2024-05-22 04:32:50] -rw------- 1 boincer umatlas 1324700 May 22 02:56 cric_ddmendpoints.json [2024-05-22 04:32:50] drwx------ 4 boincer umatlas 4096 May 22 02:56 pilot3 [2024-05-22 04:32:50] -rw------- 1 boincer umatlas 929 May 22 03:59 heartbeat.json [2024-05-22 04:32:50] -rw------- 1 boincer umatlas 95 May 22 04:29 pilot_heartbeat.json [2024-05-22 04:32:50] -rw-r--r-- 1 boincer umatlas 529 May 22 04:29 boinc_task_state.xml [2024-05-22 04:32:50] -rw------- 1 boincer umatlas 1052 May 22 04:30 memory_monitor_summary.json [2024-05-22 04:32:50] drwxrwx--- 2 boincer umatlas 4096 May 22 04:30 PanDA_Pilot-6212068053 [2024-05-22 04:32:50] -rw-r--r-- 1 boincer umatlas 6297 May 22 04:31 init_data.xml [2024-05-22 04:32:50] -rw-r--r-- 1 boincer umatlas 8192 May 22 04:32 boinc_mmap_file [2024-05-22 04:32:50] -rw-r--r-- 1 boincer umatlas 26 May 22 04:32 wrapper_checkpoint.txt [2024-05-22 04:32:50] -rw------- 1 boincer umatlas 484721 May 22 04:32 pilotlog.txt [2024-05-22 04:32:50] -rw------- 1 boincer umatlas 508496 May 22 04:32 log.38920982._007135.job.log.1 [2024-05-22 04:32:50] -rw-r--r-- 1 boincer umatlas 428 May 22 04:32 runtime_log [2024-05-22 04:32:50] -rw------- 1 boincer umatlas 626 May 22 04:32 kszMDmfxrT5n9Rq4apoT9bVoABFKDmABFKDmlqFKDmXrPKDmPcGzpm.diag [2024-05-22 04:32:50] -rw-r--r-- 1 boincer umatlas 11287 May 22 04:32 runtime_log.err [2024-05-22 04:32:50] -rw-r--r-- 1 boincer umatlas 28077 May 22 04:32 stderr.txt [2024-05-22 04:32:50] No HITS result produced [2024-05-22 04:32:50] *** Contents of shared directory: *** [2024-05-22 04:32:50] total 619980 [2024-05-22 04:32:50] -rw-r--r-- 2 boincer umatlas 634349631 May 22 02:53 ATLAS.root_0 [2024-05-22 04:32:50] -rw-r--r-- 2 boincer umatlas 17537 May 22 02:53 start_atlas.sh [2024-05-22 04:32:50] -rw-r--r-- 2 boincer umatlas 480005 May 22 02:53 input.tar.gz 04:32:51 (69182): run_atlas exited; CPU time 7560.304673 04:32:51 (69182): called boinc_finish(0) </stderr_txt> <message> upload failure: <file_xfer_error> <file_name>kszMDmfxrT5n9Rq4apoT9bVoABFKDmABFKDmlqFKDmXrPKDmPcGzpm_0_r189011282_ATLAS_result</file_name> <error_code>-161 (not found)</error_code> </file_xfer_error> </message> ]]>
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