| Name | 9CcLDmvurT5nsSi4apGgGQJmABFKDmABFKDm4ySLDmoYZKDmB2zIpn_0 |
| Workunit | 223183502 |
| Created | 22 May 2024, 3:34:18 UTC |
| Sent | 3 Jun 2024, 23:09:34 UTC |
| Report deadline | 19 Jun 2026, 5:59:45 UTC |
| Received | 22 May 2024, 8:38:27 UTC |
| Server state | In progress |
| Outcome | Success |
| Client state | Compute error |
| Exit status | 0 (0x00000000) |
| Computer ID | 10795612 |
| Run time | 2 hours 15 min 33 sec |
| CPU time | 5 hours 2 min 4 sec |
| Validate state | Initial |
| Credit | 0.00 |
| Device peak FLOPS | 31.99 GFLOPS |
| Application version | ATLAS Simulation v3.01 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 2.55 GB |
| Peak swap size | 3.14 GB |
| Peak disk usage | 1.24 GB |
Stderr output
<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
02:19:19 (181177): wrapper (7.7.26015): starting
02:19:19 (181177): wrapper: running run_atlas (--nthreads 8)
[2024-05-22 02:19:19] Arguments: --nthreads 8
[2024-05-22 02:19:19] Threads: 8
[2024-05-22 02:19:19] Checking for CVMFS
[2024-05-22 02:19:20] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-22 02:19:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-22 02:19:20] Running cvmfs_config stat atlas.cern.ch
[2024-05-22 02:19:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-22 02:19:22] 2.11.2.0 117717 2714 166948 133015 1 360 5941062 18432001 19955 130560 0 71008 91.521 1799358 40743 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2024-05-22 02:19:22] CVMFS is ok
[2024-05-22 02:19:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-22 02:19:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-22 02:19:22] Further information can be found at the LHC@home message board.
[2024-05-22 02:19:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-22 02:19:22] Checking for apptainer binary...
[2024-05-22 02:19:22] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-22 02:19:22] Running /usr/bin/apptainer --version
[2024-05-22 02:19:22] apptainer version 1.3.0-1.el7
[2024-05-22 02:19:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-22 02:19:45] c6-2-11-4.aglt2.org
[2024-05-22 02:19:45] apptainer works
[2024-05-22 02:19:45] Set ATHENA_PROC_NUMBER=8
[2024-05-22 02:19:45] Set ATHENA_CORE_NUMBER=8
[2024-05-22 02:19:45] Starting ATLAS job with PandaID=6212068023
[2024-05-22 02:19:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-22 04:34:50] *** The last 200 lines of the pilot log: ***
[2024-05-22 04:34:50] File "/tmp/boinchome/slots/4/pilot3/pilot/util/monitoring.py", line 109, in job_monitor_tasks
[2024-05-22 04:34:50] cpuconsumptiontime = get_current_cpu_consumption_time(job.pid)
[2024-05-22 04:34:50] File "/tmp/boinchome/slots/4/pilot3/pilot/util/processes.py", line 571, in get_current_cpu_consumption_time
[2024-05-22 04:34:50] _, ps_cache, _ = execute("ps -eo pid,ppid -m", mute=True, timeout=60)
[2024-05-22 04:34:50] File "/tmp/boinchome/slots/4/pilot3/pilot/util/container.py", line 94, in execute
[2024-05-22 04:34:50] process = subprocess.Popen(exe,
[2024-05-22 04:34:50] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-05-22 04:34:50] self._execute_child(args, executable, preexec_fn, close_fds,
[2024-05-22 04:34:50] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-05-22 04:34:50] raise child_exception_type(errno_num, err_msg, err_filename)
[2024-05-22 04:34:50] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-05-22 04:34:50]
[2024-05-22 04:34:50] 2024-05-22 08:32:08,077 | WARNING | will send preliminary diagnostics (and pretend job is still running)=Exception caught: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-05-22 04:34:50] 2024-05-22 08:32:08,077 | INFO | pilot will not update the server (heartbeat message will be written to file)
[2024-05-22 04:34:50] 2024-05-22 08:32:08,078 | INFO | job 6212068023 has state 'running' - writing heartbeat
[2024-05-22 04:34:50] 2024-05-22 08:32:08,078 | INFO | payload/TRF did not report the number of read events
[2024-05-22 04:34:50] 2024-05-22 08:32:08,081 | INFO | executing command: lscpu
[2024-05-22 04:34:50] 2024-05-22 08:32:08,089 | WARNING | exception caught: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-05-22 04:34:50] 2024-05-22 08:32:10,593 | INFO | monitor loop #558: job 0:6212068023 is in state 'failed'
[2024-05-22 04:34:50] 2024-05-22 08:32:10,593 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2024-05-22 04:34:50] 2024-05-22 08:32:13,096 | INFO | monitor loop #559: job 0:6212068023 is in state 'failed'
[2024-05-22 04:34:50] 2024-05-22 08:32:13,096 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2024-05-22 04:34:50] 2024-05-22 08:32:15,600 | INFO | monitor loop #560: job 0:6212068023 is in state 'failed'
[2024-05-22 04:34:50] 2024-05-22 08:32:15,600 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2024-05-22 04:34:50] 2024-05-22 08:32:15,652 | WARNING | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-22 04:34:50] 2024-05-22 08:32:15,653 | INFO | will abort loop
[2024-05-22 04:34:50] 2024-05-22 08:32:16,006 | WARNING | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-22 04:34:50] 2024-05-22 08:32:16,354 | WARNING | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-22 04:34:50] 2024-05-22 08:32:16,354 | WARNING | since job:queue_monitor is responsible for sending job updates, we sleep for 20 s
[2024-05-22 04:34:50] 2024-05-22 08:32:16,417 | INFO | all payload control threads have been joined
[2024-05-22 04:34:50] 2024-05-22 08:32:16,453 | INFO | all data control threads have been joined
[2024-05-22 04:34:50] 2024-05-22 08:32:16,484 | INFO | all job control threads have been joined
[2024-05-22 04:34:50] 2024-05-22 08:32:16,590 | INFO | found 1 job(s) in 20 queues
[2024-05-22 04:34:50] 2024-05-22 08:32:16,590 | INFO | aborting job 6212068023
[2024-05-22 04:34:50] 2024-05-22 08:32:16,663 | INFO | [job] job monitor thread has finished
[2024-05-22 04:34:50] 2024-05-22 08:32:16,677 | WARNING | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-22 04:34:50] 2024-05-22 08:32:16,677 | WARNING | will wait for a maximum of 300 s for threads to finish
[2024-05-22 04:34:50] 2024-05-22 08:32:16,715 | INFO | [payload] validate_post thread has finished
[2024-05-22 04:34:50] 2024-05-22 08:32:16,732 | INFO | [payload] run_realtimelog thread has finished
[2024-05-22 04:34:50] 2024-05-22 08:32:16,978 | INFO | [job] create_data_payload thread has finished
[2024-05-22 04:34:50] 2024-05-22 08:32:17,257 | INFO | [job] retrieve thread has finished
[2024-05-22 04:34:50] 2024-05-22 08:32:17,278 | INFO | [payload] validate_pre thread has finished
[2024-05-22 04:34:50] 2024-05-22 08:32:17,422 | INFO | [payload] control thread has finished
[2024-05-22 04:34:50] 2024-05-22 08:32:17,459 | INFO | [data] control thread has finished
[2024-05-22 04:34:50] 2024-05-22 08:32:17,491 | INFO | [job] control thread has finished
[2024-05-22 04:34:50] 2024-05-22 08:32:17,595 | INFO | [payload] failed_post thread has finished
[2024-05-22 04:34:50] 2024-05-22 08:32:17,931 | INFO | [data] copytool_in thread has finished
[2024-05-22 04:34:50] 2024-05-22 08:32:18,029 | INFO | [job] validate thread has finished
[2024-05-22 04:34:50] 2024-05-22 08:32:20,012 | INFO | [data] queue_monitor thread has finished
[2024-05-22 04:34:50] 2024-05-22 08:32:21,396 | INFO | [payload] execute_payloads thread has finished
[2024-05-22 04:34:50] 2024-05-22 08:32:37,454 | INFO | job 6212068023 has state=failed
[2024-05-22 04:34:50] 2024-05-22 08:32:37,454 | INFO | preparing for final server update for job 6212068023 in state='failed'
[2024-05-22 04:34:50] 2024-05-22 08:32:37,785 | WARNING | job_aborted has been set - aborting pilot monitoring
[2024-05-22 04:34:50] 2024-05-22 08:32:37,786 | INFO | [monitor] control thread has ended
[2024-05-22 04:34:50] 2024-05-22 08:32:39,637 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:32:41,647 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:32:43,657 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:32:45,667 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:32:47,678 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:32:49,688 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:32:51,696 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:32:53,707 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:32:55,719 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:32:57,730 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:32:59,739 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:33:01,749 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:33:03,757 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:33:05,767 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:33:07,777 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:33:09,787 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:33:11,797 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:33:13,807 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:33:15,817 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:33:17,827 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:33:19,837 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:33:22,241 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:33:24,250 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:33:26,260 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:33:28,270 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:33:30,279 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:33:32,289 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:33:34,299 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:33:36,309 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:33:38,319 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:33:40,329 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:33:42,339 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:33:44,346 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:33:46,354 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:33:48,364 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:33:50,374 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:33:52,383 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:33:54,392 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:33:56,403 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:33:58,413 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:34:00,422 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:34:02,430 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:34:04,440 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:34:06,448 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:34:08,455 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:34:10,464 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:34:12,474 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:34:14,484 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:34:16,494 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:34:18,504 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:34:20,514 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:34:22,519 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:34:24,530 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:34:26,540 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:34:28,550 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:34:30,560 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:34:32,570 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:34:32,933 | INFO | proceeding with final server update
[2024-05-22 04:34:50] 2024-05-22 08:34:32,934 | INFO | this job has now completed (state=failed)
[2024-05-22 04:34:50] 2024-05-22 08:34:32,934 | INFO | pilot will not update the server (heartbeat message will be written to file)
[2024-05-22 04:34:50] 2024-05-22 08:34:32,934 | INFO | job 6212068023 has failed - writing final server update
[2024-05-22 04:34:50] 2024-05-22 08:34:32,934 | WARNING | making sure that job.state is set to failed since a pilot error code is set
[2024-05-22 04:34:50] 2024-05-22 08:34:32,934 | INFO | payload/TRF did not report the number of read events
[2024-05-22 04:34:50] 2024-05-22 08:34:32,937 | INFO | executing command: lscpu
[2024-05-22 04:34:50] File "/tmp/boinchome/slots/4/pilot3/pilot/common/exception.py", line 450, in run
[2024-05-22 04:34:50] self.target(**self.kwargs)
[2024-05-22 04:34:50] File "/tmp/boinchome/slots/4/pilot3/pilot/control/job.py", line 2568, in queue_monitor
[2024-05-22 04:34:50] update_server(job, args)
[2024-05-22 04:34:50] File "/tmp/boinchome/slots/4/pilot3/pilot/control/job.py", line 2617, in update_server
[2024-05-22 04:34:50] send_state(job, args, job.state, metadata=metadata)
[2024-05-22 04:34:50] File "/tmp/boinchome/slots/4/pilot3/pilot/control/job.py", line 420, in send_state
[2024-05-22 04:34:50] data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2024-05-22 04:34:50] File "/tmp/boinchome/slots/4/pilot3/pilot/control/job.py", line 747, in get_data_structure
[2024-05-22 04:34:50] cpumodel = get_cpu_cores(cpumodel) # add the CPU cores if not present
[2024-05-22 04:34:50] File "/tmp/boinchome/slots/4/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores
[2024-05-22 04:34:50] ec, stdout = lscpu()
[2024-05-22 04:34:50] File "/tmp/boinchome/slots/4/pilot3/pilot/util/workernode.py", line 333, in lscpu
[2024-05-22 04:34:50] ec, stdout, _ = execute(cmd)
[2024-05-22 04:34:50] File "/tmp/boinchome/slots/4/pilot3/pilot/util/container.py", line 94, in execute
[2024-05-22 04:34:50] process = subprocess.Popen(exe,
[2024-05-22 04:34:50] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-05-22 04:34:50] self._execute_child(args, executable, preexec_fn, close_fds,
[2024-05-22 04:34:50] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-05-22 04:34:50] raise child_exception_type(errno_num, err_msg, err_filename)
[2024-05-22 04:34:50] exception caught by thread run() function: (<class 'OSError'>, OSError(107, 'Transport endpoint is not connected'), <traceback object at 0x7f4a83131bc0>)
[2024-05-22 04:34:50] Traceback (most recent call last):
[2024-05-22 04:34:50] File "/tmp/boinchome/slots/4/pilot3/pilot/common/exception.py", line 450, in run
[2024-05-22 04:34:50] self.target(**self.kwargs)
[2024-05-22 04:34:50] File "/tmp/boinchome/slots/4/pilot3/pilot/control/job.py", line 2568, in queue_monitor
[2024-05-22 04:34:50] update_server(job, args)
[2024-05-22 04:34:50] File "/tmp/boinchome/slots/4/pilot3/pilot/control/job.py", line 2617, in update_server
[2024-05-22 04:34:50] send_state(job, args, job.state, metadata=metadata)
[2024-05-22 04:34:50] File "/tmp/boinchome/slots/4/pilot3/pilot/control/job.py", line 420, in send_state
[2024-05-22 04:34:50] data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2024-05-22 04:34:50] File "/tmp/boinchome/slots/4/pilot3/pilot/control/job.py", line 747, in get_data_structure
[2024-05-22 04:34:50] cpumodel = get_cpu_cores(cpumodel) # add the CPU cores if not present
[2024-05-22 04:34:50] File "/tmp/boinchome/slots/4/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores
[2024-05-22 04:34:50] ec, stdout = lscpu()
[2024-05-22 04:34:50] File "/tmp/boinchome/slots/4/pilot3/pilot/util/workernode.py", line 333, in lscpu
[2024-05-22 04:34:50] ec, stdout, _ = execute(cmd)
[2024-05-22 04:34:50] File "/tmp/boinchome/slots/4/pilot3/pilot/util/container.py", line 94, in execute
[2024-05-22 04:34:50] process = subprocess.Popen(exe,
[2024-05-22 04:34:50] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-05-22 04:34:50] self._execute_child(args, executable, preexec_fn, close_fds,
[2024-05-22 04:34:50] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-05-22 04:34:50] raise child_exception_type(errno_num, err_msg, err_filename)
[2024-05-22 04:34:50] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-05-22 04:34:50]
[2024-05-22 04:34:50] None
[2024-05-22 04:34:50] exception has been put in bucket queue belonging to thread 'queue_monitor'
[2024-05-22 04:34:50] setting graceful stop in 10 s since there is no point in continuing
[2024-05-22 04:34:50] 2024-05-22 08:34:34,580 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:34:36,590 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:34:38,600 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:34:40,610 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:34:42,620 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139958150190912)>', '<ExcThread(queue_monitor, started 139957213591296)>']
[2024-05-22 04:34:50] 2024-05-22 08:34:44,630 | INFO | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 139958150190912)>'])
[2024-05-22 04:34:50] 2024-05-22 08:34:49,654 | INFO | all workflow threads have been joined
[2024-05-22 04:34:50] 2024-05-22 08:34:49,655 | INFO | end of generic workflow (traces error code: 0)
[2024-05-22 04:34:50] 2024-05-22 08:34:49,655 | INFO | traces error code: 0
[2024-05-22 04:34:50] 2024-05-22 08:34:49,655 | INFO | pilot has finished (exit code=0, shell exit code=0)
[2024-05-22 04:34:50] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-05-22 04:34:50] ==== pilot stdout END ====
[2024-05-22 04:34:50] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-05-22 04:34:50] ==== wrapper stdout RESUME ====
[2024-05-22 04:34:50] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-05-22 04:34:50] pilotpid: 220134
[2024-05-22 04:34:50] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-05-22 04:34:50] Pilot exit status: 135
[2024-05-22 04:34:50] ./runpilot2-wrapper.sh: line 949: /usr/bin/cat: Transport endpoint is not connected
[2024-05-22 04:34:50] ./runpilot2-wrapper.sh: line 949: xargs: command not found
[2024-05-22 04:34:50] ./runpilot2-wrapper.sh: line 949: /usr/bin/cut: Transport endpoint is not connected
[2024-05-22 04:34:50] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-05-22 04:34:50] pandaids:
[2024-05-22 04:34:50] ./runpilot2-wrapper.sh: line 501: /usr/bin/ps: Transport endpoint is not connected
[2024-05-22 04:34:50] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-05-22 04:34:50] No supervise_pilot CHILD process found
[2024-05-22 04:34:50] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-05-22 04:34:50] Test setup, not cleaning
[2024-05-22 04:34:50] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-05-22 04:34:50] ==== wrapper stdout END ====
[2024-05-22 04:34:50] ./runpilot2-wrapper.sh: line 10: /usr/bin/date: Transport endpoint is not connected
[2024-05-22 04:34:50] ==== wrapper stderr END ====
[2024-05-22 04:34:50] ./runpilot2-wrapper.sh: line 522: /usr/bin/date: Transport endpoint is not connected
[2024-05-22 04:34:50] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-05-22 04:34:50] apfmon messages muted
[2024-05-22 04:34:50] *** Error codes and diagnostics ***
[2024-05-22 04:34:50] *** Listing of results directory ***
[2024-05-22 04:34:50] total 621992
[2024-05-22 04:34:50] -rw-r--r-- 1 boincer umatlas 467845 May 21 23:27 pilot3.tar.gz
[2024-05-22 04:34:50] -rw-r--r-- 1 boincer umatlas 5633 May 21 23:33 queuedata.json
[2024-05-22 04:34:50] -rwx------ 1 boincer umatlas 32308 May 21 23:33 runpilot2-wrapper.sh
[2024-05-22 04:34:50] -rw-r--r-- 1 boincer umatlas 100 May 22 02:18 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-22 04:34:50] -rwxr-xr-x 1 boincer umatlas 7986 May 22 02:18 run_atlas
[2024-05-22 04:34:50] -rw-r--r-- 1 boincer umatlas 105 May 22 02:18 job.xml
[2024-05-22 04:34:50] -rw-r--r-- 2 boincer umatlas 632000635 May 22 02:19 EVNT.38776160._000189.pool.root.1
[2024-05-22 04:34:50] -rw-r--r-- 2 boincer umatlas 17537 May 22 02:19 start_atlas.sh
[2024-05-22 04:34:50] drwxrwx--x 2 boincer umatlas 4096 May 22 02:19 shared
[2024-05-22 04:34:50] -rw-r--r-- 2 boincer umatlas 480005 May 22 02:19 input.tar.gz
[2024-05-22 04:34:50] -rw-r--r-- 1 boincer umatlas 0 May 22 02:19 boinc_lockfile
[2024-05-22 04:34:50] -rw-r--r-- 1 boincer umatlas 2627 May 22 02:19 pandaJob.out
[2024-05-22 04:34:50] -rw------- 1 boincer umatlas 424 May 22 02:19 setup.sh.local
[2024-05-22 04:34:50] -rw------- 1 boincer umatlas 1011152 May 22 02:21 agis_schedconf.cvmfs.json
[2024-05-22 04:34:50] -rw------- 1 boincer umatlas 0 May 22 02:21 agis_ddmendpoints.agis.ALL.json
[2024-05-22 04:34:50] -rw------- 1 boincer umatlas 1324700 May 22 02:21 cric_ddmendpoints.json
[2024-05-22 04:34:50] drwx------ 4 boincer umatlas 4096 May 22 02:21 pilot3
[2024-05-22 04:34:50] -rw------- 1 boincer umatlas 927 May 22 04:26 heartbeat.json
[2024-05-22 04:34:50] -rw-r--r-- 1 boincer umatlas 6298 May 22 04:31 init_data.xml
[2024-05-22 04:34:50] -rw------- 1 boincer umatlas 95 May 22 04:31 pilot_heartbeat.json
[2024-05-22 04:34:50] -rw------- 1 boincer umatlas 1054 May 22 04:32 memory_monitor_summary.json
[2024-05-22 04:34:50] drwxrwx--- 2 boincer umatlas 4096 May 22 04:32 PanDA_Pilot-6212068023
[2024-05-22 04:34:50] -rw-r--r-- 1 boincer umatlas 530 May 22 04:32 boinc_task_state.xml
[2024-05-22 04:34:50] -rw-r--r-- 1 boincer umatlas 27 May 22 04:34 wrapper_checkpoint.txt
[2024-05-22 04:34:50] -rw-r--r-- 1 boincer umatlas 8192 May 22 04:34 boinc_mmap_file
[2024-05-22 04:34:50] -rw------- 1 boincer umatlas 700117 May 22 04:34 pilotlog.txt
[2024-05-22 04:34:50] -rw------- 1 boincer umatlas 724190 May 22 04:34 log.38920982._007106.job.log.1
[2024-05-22 04:34:50] -rw-r--r-- 1 boincer umatlas 428 May 22 04:34 runtime_log
[2024-05-22 04:34:50] -rw------- 1 boincer umatlas 629 May 22 04:34 9CcLDmvurT5nsSi4apGgGQJmABFKDmABFKDm4ySLDmoYZKDmB2zIpn.diag
[2024-05-22 04:34:50] -rw-r--r-- 1 boincer umatlas 11287 May 22 04:34 runtime_log.err
[2024-05-22 04:34:50] -rw-r--r-- 1 boincer umatlas 28293 May 22 04:34 stderr.txt
[2024-05-22 04:34:50] No HITS result produced
[2024-05-22 04:34:50] *** Contents of shared directory: ***
[2024-05-22 04:34:50] total 617688
[2024-05-22 04:34:50] -rw-r--r-- 2 boincer umatlas 632000635 May 22 02:19 ATLAS.root_0
[2024-05-22 04:34:50] -rw-r--r-- 2 boincer umatlas 17537 May 22 02:19 start_atlas.sh
[2024-05-22 04:34:50] -rw-r--r-- 2 boincer umatlas 480005 May 22 02:19 input.tar.gz
04:34:51 (181177): run_atlas exited; CPU time 18098.821804
04:34:51 (181177): called boinc_finish(0)
</stderr_txt>
<message>
upload failure: <file_xfer_error>
<file_name>9CcLDmvurT5nsSi4apGgGQJmABFKDmABFKDm4ySLDmoYZKDmB2zIpn_0_r1507696420_ATLAS_result</file_name>
<error_code>-161 (not found)</error_code>
</file_xfer_error>
</message>
]]>
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