| Name | JWpKDmFArT5nsSi4apGgGQJmABFKDmABFKDm4ySLDmvSZKDm8XqNvm_0 |
| Workunit | 223182352 |
| Created | 22 May 2024, 2:46:04 UTC |
| Sent | 3 Jun 2024, 23:09:34 UTC |
| Report deadline | 20 Oct 2028, 5:45:28 UTC |
| Received | 22 May 2024, 8:38:27 UTC |
| Server state | In progress |
| Outcome | Success |
| Client state | Compute error |
| Exit status | 0 (0x00000000) |
| Computer ID | 10795612 |
| Run time | 2 hours 16 min 58 sec |
| CPU time | 4 hours 52 min 16 sec |
| Validate state | Initial |
| Credit | 0.00 |
| Device peak FLOPS | 31.99 GFLOPS |
| Application version | ATLAS Simulation v3.01 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 2.55 GB |
| Peak swap size | 31.65 GB |
| Peak disk usage | 1.21 GB |
Stderr output
<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
02:17:53 (166605): wrapper (7.7.26015): starting
02:17:53 (166605): wrapper: running run_atlas (--nthreads 8)
[2024-05-22 02:17:53] Arguments: --nthreads 8
[2024-05-22 02:17:53] Threads: 8
[2024-05-22 02:17:53] Checking for CVMFS
[2024-05-22 02:17:54] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-22 02:17:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-22 02:17:54] Running cvmfs_config stat atlas.cern.ch
[2024-05-22 02:17:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-22 02:17:55] 2.11.2.0 117717 2712 167032 133015 3 360 5397732 18432001 19674 130560 0 60593 93.734 1632881 41913 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2024-05-22 02:17:55] CVMFS is ok
[2024-05-22 02:17:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-22 02:17:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-22 02:17:55] Further information can be found at the LHC@home message board.
[2024-05-22 02:17:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-22 02:17:55] Checking for apptainer binary...
[2024-05-22 02:17:55] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-22 02:17:55] Running /usr/bin/apptainer --version
[2024-05-22 02:17:55] apptainer version 1.3.0-1.el7
[2024-05-22 02:17:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-22 02:18:18] c6-2-11-4.aglt2.org
[2024-05-22 02:18:18] apptainer works
[2024-05-22 02:18:18] Set ATHENA_PROC_NUMBER=8
[2024-05-22 02:18:18] Set ATHENA_CORE_NUMBER=8
[2024-05-22 02:18:18] Starting ATLAS job with PandaID=6212002164
[2024-05-22 02:18:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-22 04:34:48] *** The last 200 lines of the pilot log: ***
[2024-05-22 04:34:48] 2024-05-22 08:32:10,341 | WARNING | Exception caught: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-05-22 04:34:48] 2024-05-22 08:32:10,341 | WARNING | Traceback (most recent call last):
[2024-05-22 04:34:48] File "/tmp/boinchome/slots/2/pilot3/pilot/util/monitoring.py", line 109, in job_monitor_tasks
[2024-05-22 04:34:48] cpuconsumptiontime = get_current_cpu_consumption_time(job.pid)
[2024-05-22 04:34:48] File "/tmp/boinchome/slots/2/pilot3/pilot/util/processes.py", line 571, in get_current_cpu_consumption_time
[2024-05-22 04:34:48] _, ps_cache, _ = execute("ps -eo pid,ppid -m", mute=True, timeout=60)
[2024-05-22 04:34:48] File "/tmp/boinchome/slots/2/pilot3/pilot/util/container.py", line 94, in execute
[2024-05-22 04:34:48] process = subprocess.Popen(exe,
[2024-05-22 04:34:48] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-05-22 04:34:48] self._execute_child(args, executable, preexec_fn, close_fds,
[2024-05-22 04:34:48] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-05-22 04:34:48] raise child_exception_type(errno_num, err_msg, err_filename)
[2024-05-22 04:34:48] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-05-22 04:34:48]
[2024-05-22 04:34:48] 2024-05-22 08:32:10,342 | WARNING | will send preliminary diagnostics (and pretend job is still running)=Exception caught: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-05-22 04:34:48] 2024-05-22 08:32:10,342 | INFO | pilot will not update the server (heartbeat message will be written to file)
[2024-05-22 04:34:48] 2024-05-22 08:32:10,342 | INFO | job 6212002164 has state 'running' - writing heartbeat
[2024-05-22 04:34:48] 2024-05-22 08:32:10,342 | INFO | payload/TRF did not report the number of read events
[2024-05-22 04:34:48] 2024-05-22 08:32:10,345 | INFO | executing command: lscpu
[2024-05-22 04:34:48] 2024-05-22 08:32:10,351 | WARNING | exception caught: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-05-22 04:34:48] 2024-05-22 08:32:12,854 | INFO | monitor loop #563: job 0:6212002164 is in state 'failed'
[2024-05-22 04:34:48] 2024-05-22 08:32:12,854 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2024-05-22 04:34:48] 2024-05-22 08:32:15,357 | INFO | monitor loop #564: job 0:6212002164 is in state 'failed'
[2024-05-22 04:34:48] 2024-05-22 08:32:15,357 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2024-05-22 04:34:48] 2024-05-22 08:32:15,842 | WARNING | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-22 04:34:48] 2024-05-22 08:32:15,842 | INFO | will abort loop
[2024-05-22 04:34:48] 2024-05-22 08:32:15,842 | WARNING | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-22 04:34:48] 2024-05-22 08:32:15,843 | WARNING | since job:queue_monitor is responsible for sending job updates, we sleep for 20 s
[2024-05-22 04:34:48] 2024-05-22 08:32:15,908 | INFO | all payload control threads have been joined
[2024-05-22 04:34:48] 2024-05-22 08:32:16,047 | INFO | found 1 job(s) in 20 queues
[2024-05-22 04:34:48] 2024-05-22 08:32:16,047 | INFO | aborting job 6212002164
[2024-05-22 04:34:48] 2024-05-22 08:32:16,131 | WARNING | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-22 04:34:48] 2024-05-22 08:32:16,131 | WARNING | will wait for a maximum of 300 s for threads to finish
[2024-05-22 04:34:48] 2024-05-22 08:32:16,278 | INFO | all data control threads have been joined
[2024-05-22 04:34:48] 2024-05-22 08:32:16,848 | INFO | [job] job monitor thread has finished
[2024-05-22 04:34:48] 2024-05-22 08:32:16,913 | INFO | [payload] control thread has finished
[2024-05-22 04:34:48] 2024-05-22 08:32:16,985 | INFO | all job control threads have been joined
[2024-05-22 04:34:48] 2024-05-22 08:32:17,226 | INFO | [data] copytool_in thread has finished
[2024-05-22 04:34:48] 2024-05-22 08:32:17,228 | INFO | [payload] validate_pre thread has finished
[2024-05-22 04:34:48] 2024-05-22 08:32:17,243 | INFO | [job] retrieve thread has finished
[2024-05-22 04:34:48] 2024-05-22 08:32:17,284 | INFO | [data] control thread has finished
[2024-05-22 04:34:48] 2024-05-22 08:32:17,617 | INFO | [payload] validate_post thread has finished
[2024-05-22 04:34:48] 2024-05-22 08:32:17,618 | INFO | [payload] failed_post thread has finished
[2024-05-22 04:34:48] 2024-05-22 08:32:17,722 | INFO | [job] create_data_payload thread has finished
[2024-05-22 04:34:48] 2024-05-22 08:32:17,990 | INFO | [job] control thread has finished
[2024-05-22 04:34:48] 2024-05-22 08:32:18,279 | INFO | [job] validate thread has finished
[2024-05-22 04:34:48] 2024-05-22 08:32:18,331 | INFO | [payload] run_realtimelog thread has finished
[2024-05-22 04:34:48] 2024-05-22 08:32:19,069 | WARNING | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-22 04:34:48] 2024-05-22 08:32:21,401 | INFO | [payload] execute_payloads thread has finished
[2024-05-22 04:34:48] 2024-05-22 08:32:23,075 | INFO | [data] queue_monitor thread has finished
[2024-05-22 04:34:48] 2024-05-22 08:32:36,943 | INFO | job 6212002164 has state=failed
[2024-05-22 04:34:48] 2024-05-22 08:32:36,943 | INFO | preparing for final server update for job 6212002164 in state='failed'
[2024-05-22 04:34:48] 2024-05-22 08:32:37,240 | WARNING | job_aborted has been set - aborting pilot monitoring
[2024-05-22 04:34:48] 2024-05-22 08:32:37,241 | INFO | [monitor] control thread has ended
[2024-05-22 04:34:48] 2024-05-22 08:32:38,042 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:32:40,053 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:32:42,063 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:32:44,073 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:32:46,079 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:32:48,089 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:32:50,099 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:32:52,109 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:32:54,119 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:32:56,129 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:32:58,139 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:33:00,149 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:33:02,159 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:33:04,169 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:33:06,174 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:33:08,186 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:33:10,196 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:33:12,205 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:33:14,215 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:33:16,225 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:33:18,232 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:33:20,241 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:33:22,252 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:33:24,263 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:33:26,273 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:33:28,281 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:33:30,293 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:33:32,303 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:33:34,313 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:33:36,323 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:33:38,332 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:33:40,342 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:33:42,352 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:33:44,362 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:33:46,372 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:33:48,378 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:33:50,389 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:33:52,397 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:33:54,408 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:33:56,417 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:33:58,425 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:34:00,432 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:34:02,441 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:34:04,451 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:34:06,461 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:34:08,468 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:34:10,479 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:34:12,489 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:34:14,499 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:34:16,509 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:34:18,519 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:34:20,528 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:34:22,539 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:34:24,549 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:34:26,557 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:34:28,568 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:34:30,578 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:34:32,443 | INFO | proceeding with final server update
[2024-05-22 04:34:48] 2024-05-22 08:34:32,444 | INFO | this job has now completed (state=failed)
[2024-05-22 04:34:48] 2024-05-22 08:34:32,444 | INFO | pilot will not update the server (heartbeat message will be written to file)
[2024-05-22 04:34:48] 2024-05-22 08:34:32,444 | INFO | job 6212002164 has failed - writing final server update
[2024-05-22 04:34:48] 2024-05-22 08:34:32,444 | WARNING | making sure that job.state is set to failed since a pilot error code is set
[2024-05-22 04:34:48] 2024-05-22 08:34:32,444 | INFO | payload/TRF did not report the number of read events
[2024-05-22 04:34:48] 2024-05-22 08:34:32,447 | INFO | executing command: lscpu
[2024-05-22 04:34:48] File "/tmp/boinchome/slots/2/pilot3/pilot/common/exception.py", line 450, in run
[2024-05-22 04:34:48] self.target(**self.kwargs)
[2024-05-22 04:34:48] File "/tmp/boinchome/slots/2/pilot3/pilot/control/job.py", line 2568, in queue_monitor
[2024-05-22 04:34:48] update_server(job, args)
[2024-05-22 04:34:48] File "/tmp/boinchome/slots/2/pilot3/pilot/control/job.py", line 2617, in update_server
[2024-05-22 04:34:48] send_state(job, args, job.state, metadata=metadata)
[2024-05-22 04:34:48] File "/tmp/boinchome/slots/2/pilot3/pilot/control/job.py", line 420, in send_state
[2024-05-22 04:34:48] data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2024-05-22 04:34:48] File "/tmp/boinchome/slots/2/pilot3/pilot/control/job.py", line 747, in get_data_structure
[2024-05-22 04:34:48] cpumodel = get_cpu_cores(cpumodel) # add the CPU cores if not present
[2024-05-22 04:34:48] File "/tmp/boinchome/slots/2/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores
[2024-05-22 04:34:48] ec, stdout = lscpu()
[2024-05-22 04:34:48] File "/tmp/boinchome/slots/2/pilot3/pilot/util/workernode.py", line 333, in lscpu
[2024-05-22 04:34:48] ec, stdout, _ = execute(cmd)
[2024-05-22 04:34:48] File "/tmp/boinchome/slots/2/pilot3/pilot/util/container.py", line 94, in execute
[2024-05-22 04:34:48] process = subprocess.Popen(exe,
[2024-05-22 04:34:48] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-05-22 04:34:48] self._execute_child(args, executable, preexec_fn, close_fds,
[2024-05-22 04:34:48] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-05-22 04:34:48] raise child_exception_type(errno_num, err_msg, err_filename)
[2024-05-22 04:34:48] exception caught by thread run() function: (<class 'OSError'>, OSError(107, 'Transport endpoint is not connected'), <traceback object at 0x7f3982267680>)
[2024-05-22 04:34:48] Traceback (most recent call last):
[2024-05-22 04:34:48] File "/tmp/boinchome/slots/2/pilot3/pilot/common/exception.py", line 450, in run
[2024-05-22 04:34:48] self.target(**self.kwargs)
[2024-05-22 04:34:48] File "/tmp/boinchome/slots/2/pilot3/pilot/control/job.py", line 2568, in queue_monitor
[2024-05-22 04:34:48] update_server(job, args)
[2024-05-22 04:34:48] File "/tmp/boinchome/slots/2/pilot3/pilot/control/job.py", line 2617, in update_server
[2024-05-22 04:34:48] send_state(job, args, job.state, metadata=metadata)
[2024-05-22 04:34:48] File "/tmp/boinchome/slots/2/pilot3/pilot/control/job.py", line 420, in send_state
[2024-05-22 04:34:48] data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2024-05-22 04:34:48] File "/tmp/boinchome/slots/2/pilot3/pilot/control/job.py", line 747, in get_data_structure
[2024-05-22 04:34:48] cpumodel = get_cpu_cores(cpumodel) # add the CPU cores if not present
[2024-05-22 04:34:48] File "/tmp/boinchome/slots/2/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores
[2024-05-22 04:34:48] ec, stdout = lscpu()
[2024-05-22 04:34:48] File "/tmp/boinchome/slots/2/pilot3/pilot/util/workernode.py", line 333, in lscpu
[2024-05-22 04:34:48] ec, stdout, _ = execute(cmd)
[2024-05-22 04:34:48] File "/tmp/boinchome/slots/2/pilot3/pilot/util/container.py", line 94, in execute
[2024-05-22 04:34:48] process = subprocess.Popen(exe,
[2024-05-22 04:34:48] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-05-22 04:34:48] self._execute_child(args, executable, preexec_fn, close_fds,
[2024-05-22 04:34:48] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-05-22 04:34:48] raise child_exception_type(errno_num, err_msg, err_filename)
[2024-05-22 04:34:48] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-05-22 04:34:48]
[2024-05-22 04:34:48] None
[2024-05-22 04:34:48] exception has been put in bucket queue belonging to thread 'queue_monitor'
[2024-05-22 04:34:48] setting graceful stop in 10 s since there is no point in continuing
[2024-05-22 04:34:48] 2024-05-22 08:34:32,588 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:34:34,596 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:34:36,606 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:34:38,616 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:34:40,626 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139885113145152)>', '<ExcThread(queue_monitor, started 139884459190016)>']
[2024-05-22 04:34:48] 2024-05-22 08:34:42,631 | INFO | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 139885113145152)>'])
[2024-05-22 04:34:48] 2024-05-22 08:34:47,656 | INFO | all workflow threads have been joined
[2024-05-22 04:34:48] 2024-05-22 08:34:47,657 | INFO | end of generic workflow (traces error code: 0)
[2024-05-22 04:34:48] 2024-05-22 08:34:47,657 | INFO | traces error code: 0
[2024-05-22 04:34:48] 2024-05-22 08:34:47,657 | INFO | pilot has finished (exit code=0, shell exit code=0)
[2024-05-22 04:34:48] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-05-22 04:34:48] ==== pilot stdout END ====
[2024-05-22 04:34:48] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-05-22 04:34:48] ==== wrapper stdout RESUME ====
[2024-05-22 04:34:48] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-05-22 04:34:48] pilotpid: 202022
[2024-05-22 04:34:48] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-05-22 04:34:48] Pilot exit status: 135
[2024-05-22 04:34:48] ./runpilot2-wrapper.sh: line 949: /usr/bin/cat: Transport endpoint is not connected
[2024-05-22 04:34:48] ./runpilot2-wrapper.sh: line 949: xargs: command not found
[2024-05-22 04:34:48] ./runpilot2-wrapper.sh: line 949: /usr/bin/cut: Transport endpoint is not connected
[2024-05-22 04:34:48] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-05-22 04:34:48] pandaids:
[2024-05-22 04:34:48] ./runpilot2-wrapper.sh: line 501: /usr/bin/ps: Transport endpoint is not connected
[2024-05-22 04:34:48] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-05-22 04:34:48] No supervise_pilot CHILD process found
[2024-05-22 04:34:48] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-05-22 04:34:48] Test setup, not cleaning
[2024-05-22 04:34:48] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-05-22 04:34:48] ==== wrapper stdout END ====
[2024-05-22 04:34:48] ./runpilot2-wrapper.sh: line 10: /usr/bin/date: Transport endpoint is not connected
[2024-05-22 04:34:48] ==== wrapper stderr END ====
[2024-05-22 04:34:48] ./runpilot2-wrapper.sh: line 522: /usr/bin/date: Transport endpoint is not connected
[2024-05-22 04:34:48] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-05-22 04:34:48] apfmon messages muted
[2024-05-22 04:34:48] *** Error codes and diagnostics ***
[2024-05-22 04:34:48] *** Listing of results directory ***
[2024-05-22 04:34:48] total 604324
[2024-05-22 04:34:48] -rw-r--r-- 1 boincer umatlas 467845 May 21 22:23 pilot3.tar.gz
[2024-05-22 04:34:48] -rw-r--r-- 1 boincer umatlas 5633 May 21 22:44 queuedata.json
[2024-05-22 04:34:48] -rwx------ 1 boincer umatlas 32308 May 21 22:45 runpilot2-wrapper.sh
[2024-05-22 04:34:48] -rw-r--r-- 1 boincer umatlas 100 May 22 02:17 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-22 04:34:48] -rwxr-xr-x 1 boincer umatlas 7986 May 22 02:17 run_atlas
[2024-05-22 04:34:48] -rw-r--r-- 1 boincer umatlas 105 May 22 02:17 job.xml
[2024-05-22 04:34:48] -rw-r--r-- 2 boincer umatlas 613891472 May 22 02:17 EVNT.38776140._000201.pool.root.1
[2024-05-22 04:34:48] -rw-r--r-- 2 boincer umatlas 17537 May 22 02:17 start_atlas.sh
[2024-05-22 04:34:48] drwxrwx--x 2 boincer umatlas 4096 May 22 02:17 shared
[2024-05-22 04:34:48] -rw-r--r-- 2 boincer umatlas 480002 May 22 02:17 input.tar.gz
[2024-05-22 04:34:48] -rw-r--r-- 1 boincer umatlas 0 May 22 02:17 boinc_lockfile
[2024-05-22 04:34:48] -rw-r--r-- 1 boincer umatlas 2615 May 22 02:18 pandaJob.out
[2024-05-22 04:34:48] -rw------- 1 boincer umatlas 424 May 22 02:18 setup.sh.local
[2024-05-22 04:34:48] -rw------- 1 boincer umatlas 1011152 May 22 02:20 agis_schedconf.cvmfs.json
[2024-05-22 04:34:48] -rw------- 1 boincer umatlas 0 May 22 02:20 agis_ddmendpoints.agis.ALL.json
[2024-05-22 04:34:48] -rw------- 1 boincer umatlas 1324700 May 22 02:20 cric_ddmendpoints.json
[2024-05-22 04:34:48] drwx------ 4 boincer umatlas 4096 May 22 02:20 pilot3
[2024-05-22 04:34:48] -rw------- 1 boincer umatlas 927 May 22 04:25 heartbeat.json
[2024-05-22 04:34:48] -rw------- 1 boincer umatlas 95 May 22 04:31 pilot_heartbeat.json
[2024-05-22 04:34:48] -rw-r--r-- 1 boincer umatlas 6298 May 22 04:31 init_data.xml
[2024-05-22 04:34:48] -rw-r--r-- 1 boincer umatlas 531 May 22 04:32 boinc_task_state.xml
[2024-05-22 04:34:48] -rw------- 1 boincer umatlas 1067 May 22 04:32 memory_monitor_summary.json
[2024-05-22 04:34:48] drwxrwx--- 2 boincer umatlas 4096 May 22 04:32 PanDA_Pilot-6212002164
[2024-05-22 04:34:48] -rw-r--r-- 1 boincer umatlas 27 May 22 04:34 wrapper_checkpoint.txt
[2024-05-22 04:34:48] -rw-r--r-- 1 boincer umatlas 8192 May 22 04:34 boinc_mmap_file
[2024-05-22 04:34:48] -rw------- 1 boincer umatlas 709110 May 22 04:34 pilotlog.txt
[2024-05-22 04:34:48] -rw------- 1 boincer umatlas 733183 May 22 04:34 log.38776146._020090.job.log.1
[2024-05-22 04:34:48] -rw-r--r-- 1 boincer umatlas 428 May 22 04:34 runtime_log
[2024-05-22 04:34:48] -rw------- 1 boincer umatlas 628 May 22 04:34 JWpKDmFArT5nsSi4apGgGQJmABFKDmABFKDm4ySLDmvSZKDm8XqNvm.diag
[2024-05-22 04:34:48] -rw-r--r-- 1 boincer umatlas 11287 May 22 04:34 runtime_log.err
[2024-05-22 04:34:48] -rw-r--r-- 1 boincer umatlas 28272 May 22 04:34 stderr.txt
[2024-05-22 04:34:48] No HITS result produced
[2024-05-22 04:34:48] *** Contents of shared directory: ***
[2024-05-22 04:34:48] total 600000
[2024-05-22 04:34:48] -rw-r--r-- 2 boincer umatlas 613891472 May 22 02:17 ATLAS.root_0
[2024-05-22 04:34:48] -rw-r--r-- 2 boincer umatlas 17537 May 22 02:17 start_atlas.sh
[2024-05-22 04:34:48] -rw-r--r-- 2 boincer umatlas 480002 May 22 02:17 input.tar.gz
04:34:49 (166605): run_atlas exited; CPU time 17536.182477
04:34:49 (166605): called boinc_finish(0)
</stderr_txt>
<message>
upload failure: <file_xfer_error>
<file_name>JWpKDmFArT5nsSi4apGgGQJmABFKDmABFKDm4ySLDmvSZKDm8XqNvm_0_r583375837_ATLAS_result</file_name>
<error_code>-161 (not found)</error_code>
</file_xfer_error>
</message>
]]>
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