Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:27:16 (3129528): wrapper (7.7.26015): starting
14:27:16 (3129528): wrapper: running run_atlas (--nthreads 4)
[2024-05-26 14:27:16] Arguments: --nthreads 4
[2024-05-26 14:27:16] Threads: 4
[2024-05-26 14:27:16] Checking for CVMFS
[2024-05-26 14:27:16] No cvmfs_config command found, will try listing directly
[2024-05-26 14:27:16] CVMFS is ok
[2024-05-26 14:27:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-26 14:27:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-26 14:27:16] Further information can be found at the LHC@home message board.
[2024-05-26 14:27:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-26 14:27:16] Checking for apptainer binary...
[2024-05-26 14:27:16] which: no apptainer in ((null))
[2024-05-26 14:27:16] apptainer is not installed, using version from CVMFS
[2024-05-26 14:27:16] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-26 14:27:17] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut08.grid.cesnet.cz
[2024-05-26 14:27:17] apptainer works
[2024-05-26 14:27:17] Set ATHENA_PROC_NUMBER=4
[2024-05-26 14:27:17] Set ATHENA_CORE_NUMBER=4
[2024-05-26 14:27:17] Starting ATLAS job with PandaID=6211064482
[2024-05-26 14:27:17] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-26 17:02:52]  *** The last 200 lines of the pilot log: ***
[2024-05-26 17:02:52] 2024-05-26 15:02:30,870 | INFO     | intersect: -86080831226.56764
[2024-05-26 17:02:52] 2024-05-26 15:02:30,870 | INFO     | chi2: 4.046475939010108
[2024-05-26 17:02:52] 2024-05-26 15:02:30,870 | INFO     | model: linear, x: [1716726471.0, 1716726532.0, 1716726593.0, 1716726654.0, 1716726715.0, 1716726776.0, 1716726837.0, 1716726898.0, 1716726959.0, 1716727020.0, 1716
[2024-05-26 17:02:52] 2024-05-26 15:02:30,870 | INFO     | sum of square deviations: 984941258.0
[2024-05-26 17:02:52] 2024-05-26 15:02:30,871 | INFO     | sum of deviations: 52796037410.00001
[2024-05-26 17:02:52] 2024-05-26 15:02:30,871 | INFO     | mean x: 1716730924.0
[2024-05-26 17:02:52] 2024-05-26 15:02:30,871 | INFO     | mean y: 2272409.224489796
[2024-05-26 17:02:52] 2024-05-26 15:02:30,871 | INFO     | -- intersect: -92020058212.25089
[2024-05-26 17:02:52] 2024-05-26 15:02:30,871 | INFO     | intersect: -92020058212.25089
[2024-05-26 17:02:52] 2024-05-26 15:02:30,871 | INFO     | chi2: 4.048709077973618
[2024-05-26 17:02:52] 2024-05-26 15:02:30,871 | INFO     | current chi2=4.048709077973618 (change=-0.05518725422241606 %)
[2024-05-26 17:02:52] 2024-05-26 15:02:30,871 | INFO     | right removable region: 146
[2024-05-26 17:02:52] 2024-05-26 15:02:30,871 | INFO     | model: linear, x: [1716726776.0, 1716726837.0, 1716726898.0, 1716726959.0, 1716727020.0, 1716727081.0, 1716727142.0, 1716727203.0, 1716727264.0, 1716727325.0, 1716
[2024-05-26 17:02:52] 2024-05-26 15:02:30,871 | INFO     | sum of square deviations: 984941258.0
[2024-05-26 17:02:52] 2024-05-26 15:02:30,872 | INFO     | sum of deviations: 20259111441.0
[2024-05-26 17:02:52] 2024-05-26 15:02:30,872 | INFO     | mean x: 1716731229.0
[2024-05-26 17:02:52] 2024-05-26 15:02:30,872 | INFO     | mean y: 2325238.8095238097
[2024-05-26 17:02:52] 2024-05-26 15:02:30,872 | INFO     | -- intersect: -35308866164.80603
[2024-05-26 17:02:52] 2024-05-26 15:02:30,872 | INFO     | intersect: -35308866164.80603
[2024-05-26 17:02:52] 2024-05-26 15:02:30,872 | INFO     | chi2: 1.5364573746113506
[2024-05-26 17:02:52] 2024-05-26 15:02:30,872 | INFO     | current chi2=1.5364573746113506 (change=62.0297414894004 %)
[2024-05-26 17:02:52] 2024-05-26 15:02:30,872 | INFO     | model: linear, x: [1716727081.0, 1716727142.0, 1716727203.0, 1716727264.0, 1716727325.0, 1716727386.0, 1716727447.0, 1716727508.0, 1716727569.0, 1716727630.0, 1716
[2024-05-26 17:02:52] 2024-05-26 15:02:30,872 | INFO     | sum of square deviations: 887813855.5
[2024-05-26 17:02:52] 2024-05-26 15:02:30,873 | INFO     | sum of deviations: -6948266701.500001
[2024-05-26 17:02:52] 2024-05-26 15:02:30,873 | INFO     | mean x: 1716731381.5
[2024-05-26 17:02:52] 2024-05-26 15:02:30,873 | INFO     | mean y: 2367967.5422535213
[2024-05-26 17:02:52] 2024-05-26 15:02:30,873 | INFO     | -- intersect: 13437963075.233772
[2024-05-26 17:02:52] 2024-05-26 15:02:30,873 | INFO     | intersect: 13437963075.233772
[2024-05-26 17:02:52] 2024-05-26 15:02:30,873 | INFO     | chi2: 0.08039278203995183
[2024-05-26 17:02:52] 2024-05-26 15:02:30,873 | INFO     | current chi2=0.08039278203995183 (change=94.76765295488347 %)
[2024-05-26 17:02:52] 2024-05-26 15:02:30,873 | INFO     | model: linear, x: [1716727386.0, 1716727447.0, 1716727508.0, 1716727569.0, 1716727630.0, 1716727691.0, 1716727752.0, 1716727813.0, 1716727874.0, 1716727935.0, 1716
[2024-05-26 17:02:52] 2024-05-26 15:02:30,873 | INFO     | sum of square deviations: 797291228.0
[2024-05-26 17:02:52] 2024-05-26 15:02:30,874 | INFO     | sum of deviations: -9601900749.0
[2024-05-26 17:02:52] 2024-05-26 15:02:30,874 | INFO     | mean x: 1716731534.0
[2024-05-26 17:02:52] 2024-05-26 15:02:30,874 | INFO     | mean y: 2372319.299270073
[2024-05-26 17:02:52] 2024-05-26 15:02:30,874 | INFO     | -- intersect: 20677233929.775333
[2024-05-26 17:02:52] 2024-05-26 15:02:30,874 | INFO     | intersect: 20677233929.775333
[2024-05-26 17:02:52] 2024-05-26 15:02:30,874 | INFO     | chi2: 0.028042059240360514
[2024-05-26 17:02:52] 2024-05-26 15:02:30,874 | INFO     | current chi2=0.028042059240360514 (change=65.11868537348938 %)
[2024-05-26 17:02:52] 2024-05-26 15:02:30,874 | INFO     | model: linear, x: [1716727691.0, 1716727752.0, 1716727813.0, 1716727874.0, 1716727935.0, 1716727996.0, 1716728057.0, 1716728118.0, 1716728179.0, 1716728240.0, 1716
[2024-05-26 17:02:52] 2024-05-26 15:02:30,874 | INFO     | sum of square deviations: 713140813.0
[2024-05-26 17:02:52] 2024-05-26 15:02:30,875 | INFO     | sum of deviations: -8056014410.0
[2024-05-26 17:02:52] 2024-05-26 15:02:30,875 | INFO     | mean x: 1716731686.5
[2024-05-26 17:02:52] 2024-05-26 15:02:30,875 | INFO     | mean y: 2369513.090909091
[2024-05-26 17:02:52] 2024-05-26 15:02:30,875 | INFO     | -- intersect: 19395475267.85522
[2024-05-26 17:02:52] 2024-05-26 15:02:30,875 | INFO     | intersect: 19395475267.85522
[2024-05-26 17:02:52] 2024-05-26 15:02:30,875 | INFO     | chi2: 0.027376457142469363
[2024-05-26 17:02:52] 2024-05-26 15:02:30,875 | INFO     | current chi2=0.027376457142469363 (change=2.373584950327614 %)
[2024-05-26 17:02:52] 2024-05-26 15:02:30,875 | INFO     | left removable region: 40
[2024-05-26 17:02:52] 2024-05-26 15:02:30,875 | INFO     | model: linear, x: [1716728911.0, 1716728972.0, 1716729033.0, 1716729094.0, 1716729155.0, 1716729216.0, 1716729277.0, 1716729338.0, 1716729399.0, 1716729460.0, 1716
[2024-05-26 17:02:52] 2024-05-26 15:02:30,875 | INFO     | sum of square deviations: 369281342.5
[2024-05-26 17:02:52] 2024-05-26 15:02:30,876 | INFO     | sum of deviations: -435637447.50000006
[2024-05-26 17:02:52] 2024-05-26 15:02:30,876 | INFO     | mean x: 1716732113.5
[2024-05-26 17:02:52] 2024-05-26 15:02:30,876 | INFO     | mean y: 2352679.1226415094
[2024-05-26 17:02:52] 2024-05-26 15:02:30,876 | INFO     | -- intersect: 2027564109.798754
[2024-05-26 17:02:52] 2024-05-26 15:02:30,876 | INFO     | intersect: 2027564109.798754
[2024-05-26 17:02:52] 2024-05-26 15:02:30,876 | INFO     | chi2: 0.006005670711591272
[2024-05-26 17:02:52] 2024-05-26 15:02:30,876 | INFO     | -- intersect: 2027564109.798754
[2024-05-26 17:02:52] 2024-05-26 15:02:30,876 | INFO     | current memory leak: -1.18 B/s (using 106 data points, chi2=0.01)
[2024-05-26 17:02:52] 2024-05-26 15:02:30,876 | INFO     | ..............................
[2024-05-26 17:02:52] 2024-05-26 15:02:30,876 | INFO     | . Timing measurements:
[2024-05-26 17:02:52] 2024-05-26 15:02:30,877 | INFO     | . get job = 0 s
[2024-05-26 17:02:52] 2024-05-26 15:02:30,877 | INFO     | . initial setup = 1 s
[2024-05-26 17:02:52] 2024-05-26 15:02:30,877 | INFO     | . payload setup = 6 s
[2024-05-26 17:02:52] 2024-05-26 15:02:30,877 | INFO     | . stage-in = 0 s
[2024-05-26 17:02:52] 2024-05-26 15:02:30,877 | INFO     | . payload execution = 9273 s
[2024-05-26 17:02:52] 2024-05-26 15:02:30,877 | INFO     | . stage-out = 0 s
[2024-05-26 17:02:52] 2024-05-26 15:02:30,877 | INFO     | . log creation = 0 s
[2024-05-26 17:02:52] 2024-05-26 15:02:30,877 | INFO     | ..............................
[2024-05-26 17:02:52] 2024-05-26 15:02:30,930 | INFO     | 
[2024-05-26 17:02:52] 2024-05-26 15:02:30,930 | INFO     | job summary report
[2024-05-26 17:02:52] 2024-05-26 15:02:30,930 | INFO     | --------------------------------------------------
[2024-05-26 17:02:52] 2024-05-26 15:02:30,930 | INFO     | PanDA job id: 6211064482
[2024-05-26 17:02:52] 2024-05-26 15:02:30,930 | INFO     | task id: 38776125
[2024-05-26 17:02:52] 2024-05-26 15:02:30,930 | INFO     | errors: (none)
[2024-05-26 17:02:52] 2024-05-26 15:02:30,930 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-26 17:02:52] 2024-05-26 15:02:30,931 | INFO     | pilot state: finished 
[2024-05-26 17:02:52] 2024-05-26 15:02:30,931 | INFO     | transexitcode: 0
[2024-05-26 17:02:52] 2024-05-26 15:02:30,931 | INFO     | exeerrorcode: 0
[2024-05-26 17:02:52] 2024-05-26 15:02:30,931 | INFO     | exeerrordiag: 
[2024-05-26 17:02:52] 2024-05-26 15:02:30,931 | INFO     | exitcode: 0
[2024-05-26 17:02:52] 2024-05-26 15:02:30,931 | INFO     | exitmsg: OK
[2024-05-26 17:02:52] 2024-05-26 15:02:30,931 | INFO     | cpuconsumptiontime: 34327 s
[2024-05-26 17:02:52] 2024-05-26 15:02:30,931 | INFO     | nevents: 400
[2024-05-26 17:02:52] 2024-05-26 15:02:30,931 | INFO     | neventsw: 0
[2024-05-26 17:02:52] 2024-05-26 15:02:30,931 | INFO     | pid: 3140865
[2024-05-26 17:02:52] 2024-05-26 15:02:30,931 | INFO     | pgrp: 3140865
[2024-05-26 17:02:52] 2024-05-26 15:02:30,931 | INFO     | corecount: 4
[2024-05-26 17:02:52] 2024-05-26 15:02:30,931 | INFO     | event service: False
[2024-05-26 17:02:52] 2024-05-26 15:02:30,932 | INFO     | sizes: {0: 2378623, 1: 2378765, 4: 2378971, 11: 2378999, 9282: 2407361, 9284: 2416343, 9285: 2416527, 9290: 2416697}
[2024-05-26 17:02:52] 2024-05-26 15:02:30,932 | INFO     | --------------------------------------------------
[2024-05-26 17:02:52] 2024-05-26 15:02:30,932 | INFO     | 
[2024-05-26 17:02:52] 2024-05-26 15:02:30,932 | INFO     | executing command: ls -lF /scratch/boinc/var/slot40/slots/0
[2024-05-26 17:02:52] 2024-05-26 15:02:30,949 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-26 17:02:52] 2024-05-26 15:02:30,950 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-26 17:02:52] 2024-05-26 15:02:30,950 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-26 17:02:52] 2024-05-26 15:02:30,950 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-26 17:02:52] 2024-05-26 15:02:30,950 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-26 17:02:52] 2024-05-26 15:02:30,950 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-26 17:02:52] 2024-05-26 15:02:30,950 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-26 17:02:52] 2024-05-26 15:02:30,950 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-26 17:02:52] 2024-05-26 15:02:30,950 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-26 17:02:52] 2024-05-26 15:02:30,950 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-26 17:02:52] 2024-05-26 15:02:30,951 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-26 17:02:52] 2024-05-26 15:02:30,951 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-26 17:02:52] 2024-05-26 15:02:30,951 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-26 17:02:52] 2024-05-26 15:02:30,951 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-26 17:02:52] 2024-05-26 15:02:30,951 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-26 17:02:52] 2024-05-26 15:02:30,951 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-26 17:02:52] 2024-05-26 15:02:30,951 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-26 17:02:52] 2024-05-26 15:02:30,951 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-26 17:02:52] 2024-05-26 15:02:30,951 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-26 17:02:52] 2024-05-26 15:02:30,951 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-26 17:02:52] 2024-05-26 15:02:30,951 | INFO     | job 6211064482 has completed (purged errors)
[2024-05-26 17:02:52] 2024-05-26 15:02:30,951 | INFO     | overall cleanup function is called
[2024-05-26 17:02:52] 2024-05-26 15:02:31,959 | INFO     | --- collectZombieJob: --- 10, [3140865]
[2024-05-26 17:02:52] 2024-05-26 15:02:31,959 | INFO     | zombie collector waiting for pid 3140865
[2024-05-26 17:02:52] 2024-05-26 15:02:31,959 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-26 17:02:52] 2024-05-26 15:02:32,964 | INFO     | collected zombie processes
[2024-05-26 17:02:52] 2024-05-26 15:02:32,965 | INFO     | will now attempt to kill all subprocesses of pid=3140865
[2024-05-26 17:02:52] 2024-05-26 15:02:33,132 | INFO     | process IDs to be killed: [3140865] (in reverse order)
[2024-05-26 17:02:52] 2024-05-26 15:02:33,241 | WARNING  | found no corresponding commands to process id(s)
[2024-05-26 17:02:52] 2024-05-26 15:02:33,242 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-26 17:02:52] 2024-05-26 15:02:33,251 | INFO     | did not find any defunct processes belonging to 3140865
[2024-05-26 17:02:52] 2024-05-26 15:02:33,260 | INFO     | did not find any defunct processes belonging to 3140865
[2024-05-26 17:02:52] 2024-05-26 15:02:33,261 | INFO     | ready for new job
[2024-05-26 17:02:52] 2024-05-26 15:02:33,261 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-26 17:02:52] 2024-05-26 15:02:33,263 | INFO     | *************************************
[2024-05-26 17:02:52] 2024-05-26 15:02:33,263 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-26 17:02:52] 2024-05-26 15:02:33,263 | INFO     | *************************************
[2024-05-26 17:02:52] 2024-05-26 15:02:33,263 | INFO     | 
[2024-05-26 17:02:52] 2024-05-26 15:02:33,267 | INFO     | architecture information:
[2024-05-26 17:02:52] 2024-05-26 15:02:33,267 | INFO     | executing command: cat /etc/os-release
[2024-05-26 17:02:52] 2024-05-26 15:02:33,285 | INFO     | cat /etc/os-release:
[2024-05-26 17:02:52] NAME="CentOS Linux"
[2024-05-26 17:02:52] VERSION="7 (Core)"
[2024-05-26 17:02:52] ID="centos"
[2024-05-26 17:02:52] ID_LIKE="rhel fedora"
[2024-05-26 17:02:52] VERSION_ID="7"
[2024-05-26 17:02:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-26 17:02:52] ANSI_COLOR="0;31"
[2024-05-26 17:02:52] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-26 17:02:52] HOME_URL="https://www.centos.org/"
[2024-05-26 17:02:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-26 17:02:52] 
[2024-05-26 17:02:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-26 17:02:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-26 17:02:52] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-26 17:02:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-26 17:02:52] 
[2024-05-26 17:02:52] 2024-05-26 15:02:33,285 | INFO     | *************************************
[2024-05-26 17:02:52] 2024-05-26 15:02:33,788 | INFO     | executing command: df -mP /scratch/boinc/var/slot40/slots/0
[2024-05-26 17:02:52] 2024-05-26 15:02:33,805 | INFO     | sufficient remaining disk space (673886240768 B)
[2024-05-26 17:02:52] 2024-05-26 15:02:33,805 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-26 17:02:52] 2024-05-26 15:02:33,805 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-26 17:02:52] 2024-05-26 15:02:33,806 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-26 17:02:52] 2024-05-26 15:02:33,806 | INFO     | aborting loop
[2024-05-26 17:02:52] 2024-05-26 15:02:34,348 | INFO     | found 0 job(s) in 20 queues
[2024-05-26 17:02:52] 2024-05-26 15:02:34,349 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-26 17:02:52] 2024-05-26 15:02:34,349 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-26 17:02:52] 2024-05-26 15:02:34,543 | INFO     | all data control threads have been joined
[2024-05-26 17:02:52] 2024-05-26 15:02:34,612 | INFO     | all payload control threads have been joined
[2024-05-26 17:02:52] 2024-05-26 15:02:34,811 | INFO     | [job] job monitor thread has finished
[2024-05-26 17:02:52] 2024-05-26 15:02:34,811 | INFO     | [job] retrieve thread has finished
[2024-05-26 17:02:52] 2024-05-26 15:02:34,931 | INFO     | [payload] validate_pre thread has finished
[2024-05-26 17:02:52] 2024-05-26 15:02:35,108 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-26 17:02:52] 2024-05-26 15:02:35,178 | INFO     | [payload] failed_post thread has finished
[2024-05-26 17:02:52] 2024-05-26 15:02:35,417 | INFO     | all job control threads have been joined
[2024-05-26 17:02:52] 2024-05-26 15:02:35,455 | INFO     | [data] copytool_in thread has finished
[2024-05-26 17:02:52] 2024-05-26 15:02:35,549 | INFO     | [data] control thread has finished
[2024-05-26 17:02:52] 2024-05-26 15:02:35,616 | INFO     | [payload] control thread has finished
[2024-05-26 17:02:52] 2024-05-26 15:02:35,619 | INFO     | [payload] validate_post thread has finished
[2024-05-26 17:02:52] 2024-05-26 15:02:35,940 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-26 17:02:52] 2024-05-26 15:02:35,968 | INFO     | [job] validate thread has finished
[2024-05-26 17:02:52] 2024-05-26 15:02:36,205 | INFO     | [payload] execute_payloads thread has finished
[2024-05-26 17:02:52] 2024-05-26 15:02:36,242 | INFO     | [job] create_data_payload thread has finished
[2024-05-26 17:02:52] 2024-05-26 15:02:36,421 | INFO     | [job] control thread has finished
[2024-05-26 17:02:52] 2024-05-26 15:02:36,877 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-26 17:02:52] 2024-05-26 15:02:36,945 | INFO     | [job] queue monitor thread has finished
[2024-05-26 17:02:52] 2024-05-26 15:02:37,114 | INFO     | [data] copytool_out thread has finished
[2024-05-26 17:02:52] 2024-05-26 15:02:40,883 | INFO     | [data] queue_monitor thread has finished
[2024-05-26 17:02:52] 2024-05-26 15:02:44,388 | INFO     | job.realtimelogging is not enabled
[2024-05-26 17:02:52] 2024-05-26 15:02:45,394 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-26 17:02:52] 2024-05-26 15:02:46,306 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47725140005952)>', '<ExcThread(monitor, started 47725315458816)>']
[2024-05-26 17:02:52] 2024-05-26 15:02:46,386 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-26 17:02:52] 2024-05-26 15:02:46,387 | INFO     | [monitor] control thread has ended
[2024-05-26 17:02:52] 2024-05-26 15:02:51,332 | INFO     | all workflow threads have been joined
[2024-05-26 17:02:52] 2024-05-26 15:02:51,332 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-26 17:02:52] 2024-05-26 15:02:51,332 | INFO     | traces error code: 0
[2024-05-26 17:02:52] 2024-05-26 15:02:51,332 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-26 17:02:52] 2024-05-26 15:02:51,430 [wrapper] ==== pilot stdout END ====
[2024-05-26 17:02:52] 2024-05-26 15:02:51,432 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-26 17:02:52] 2024-05-26 15:02:51,434 [wrapper] pilotpid: 3133850
[2024-05-26 17:02:52] 2024-05-26 15:02:51,436 [wrapper] Pilot exit status: 0
[2024-05-26 17:02:52] 2024-05-26 15:02:51,443 [wrapper] pandaids: 6211064482
[2024-05-26 17:02:52] 2024-05-26 15:02:51,502 [wrapper] cleanup supervisor_pilot 3444448 3133851
[2024-05-26 17:02:52] 2024-05-26 15:02:51,505 [wrapper] Test setup, not cleaning
[2024-05-26 17:02:52] 2024-05-26 15:02:51,507 [wrapper] ==== wrapper stdout END ====
[2024-05-26 17:02:52] 2024-05-26 15:02:51,510 [wrapper] ==== wrapper stderr END ====
[2024-05-26 17:02:52] 2024-05-26 15:02:51,515 [wrapper] apfmon messages muted
[2024-05-26 17:02:52]  *** Error codes and diagnostics ***
[2024-05-26 17:02:52]     "exeErrorCode": 0,
[2024-05-26 17:02:52]     "exeErrorDiag": "",
[2024-05-26 17:02:52]     "pilotErrorCode": 0,
[2024-05-26 17:02:52]     "pilotErrorDiag": "",
[2024-05-26 17:02:52]  *** Listing of results directory ***
[2024-05-26 17:02:52] total 837316
[2024-05-26 17:02:52] -rw-r--r-- 1 boinc boinc    467845 May 21 04:59 pilot3.tar.gz
[2024-05-26 17:02:52] -rwx------ 1 boinc boinc     32308 May 21 05:10 runpilot2-wrapper.sh
[2024-05-26 17:02:52] -rw-r--r-- 1 boinc boinc      5633 May 21 05:10 queuedata.json
[2024-05-26 17:02:52] -rw-r--r-- 1 boinc boinc       100 May 26 14:27 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-26 17:02:52] -rwxr-xr-x 1 boinc boinc      7986 May 26 14:27 run_atlas
[2024-05-26 17:02:52] -rw-r--r-- 1 boinc boinc       105 May 26 14:27 job.xml
[2024-05-26 17:02:52] -rw-r--r-- 1 boinc boinc      6663 May 26 14:27 init_data.xml
[2024-05-26 17:02:52] -rw-r--r-- 2 boinc boinc 601356612 May 26 14:27 EVNT.38776119._000759.pool.root.1
[2024-05-26 17:02:52] -rw-r--r-- 2 boinc boinc     17537 May 26 14:27 start_atlas.sh
[2024-05-26 17:02:52] drwxrwx--x 2 boinc boinc      4096 May 26 14:27 shared
[2024-05-26 17:02:52] -rw-r--r-- 2 boinc boinc    480007 May 26 14:27 input.tar.gz
[2024-05-26 17:02:52] -rw-r--r-- 1 boinc boinc         0 May 26 14:27 boinc_lockfile
[2024-05-26 17:02:52] -rw-r--r-- 1 boinc boinc      2636 May 26 14:27 pandaJob.out
[2024-05-26 17:02:52] -rw------- 1 boinc boinc       424 May 26 14:27 setup.sh.local
[2024-05-26 17:02:52] -rw------- 1 boinc boinc   1010157 May 26 14:27 agis_schedconf.cvmfs.json
[2024-05-26 17:02:52] -rw------- 1 boinc boinc         0 May 26 14:27 agis_ddmendpoints.agis.ALL.json
[2024-05-26 17:02:52] -rw------- 1 boinc boinc   1317222 May 26 14:27 cric_ddmendpoints.json
[2024-05-26 17:02:52] drwx------ 4 boinc boinc      4096 May 26 14:27 pilot3
[2024-05-26 17:02:52] -rw------- 1 boinc boinc        95 May 26 17:01 pilot_heartbeat.json
[2024-05-26 17:02:52] -rw------- 1 boinc boinc 249971361 May 26 17:01 HITS.38776125._027097.pool.root.1
[2024-05-26 17:02:52] -rw-r--r-- 1 boinc boinc       530 May 26 17:01 boinc_task_state.xml
[2024-05-26 17:02:52] -rw------- 1 boinc boinc      1047 May 26 17:02 memory_monitor_summary.json
[2024-05-26 17:02:52] -rw------- 1 boinc boinc    297384 May 26 17:02 log.38776125._027097.job.log.tgz.1
[2024-05-26 17:02:52] -rw------- 1 boinc boinc      7762 May 26 17:02 heartbeat.json
[2024-05-26 17:02:52] -rw-r--r-- 1 boinc boinc        27 May 26 17:02 wrapper_checkpoint.txt
[2024-05-26 17:02:52] -rw-r--r-- 1 boinc boinc      8192 May 26 17:02 boinc_mmap_file
[2024-05-26 17:02:52] -rw------- 1 boinc boinc      4293 May 26 17:02 pilotlog.txt
[2024-05-26 17:02:52] -rw------- 1 boinc boinc    986392 May 26 17:02 log.38776125._027097.job.log.1
[2024-05-26 17:02:52] -rw------- 1 boinc boinc       357 May 26 17:02 output.list
[2024-05-26 17:02:52] -rw-r--r-- 1 boinc boinc       620 May 26 17:02 runtime_log
[2024-05-26 17:02:52] -rw------- 1 boinc boinc   1300480 May 26 17:02 result.tar.gz
[2024-05-26 17:02:52] -rw-r--r-- 1 boinc boinc     11409 May 26 17:02 runtime_log.err
[2024-05-26 17:02:52] -rw------- 1 boinc boinc       654 May 26 17:02 Y79MDmz4UT5nsSi4apGgGQJmABFKDmABFKDm4ySLDmCEXKDmPN9OIn.diag
[2024-05-26 17:02:52] -rw-r--r-- 1 boinc boinc     21280 May 26 17:02 stderr.txt
[2024-05-26 17:02:52] HITS file was successfully produced:
[2024-05-26 17:02:52] -rw------- 1 boinc boinc 249971361 May 26 17:01 shared/HITS.pool.root.1
[2024-05-26 17:02:52]  *** Contents of shared directory: ***
[2024-05-26 17:02:52] total 833152
[2024-05-26 17:02:52] -rw-r--r-- 2 boinc boinc 601356612 May 26 14:27 ATLAS.root_0
[2024-05-26 17:02:52] -rw-r--r-- 2 boinc boinc     17537 May 26 14:27 start_atlas.sh
[2024-05-26 17:02:52] -rw-r--r-- 2 boinc boinc    480007 May 26 14:27 input.tar.gz
[2024-05-26 17:02:52] -rw------- 1 boinc boinc 249971361 May 26 17:01 HITS.pool.root.1
[2024-05-26 17:02:52] -rw------- 1 boinc boinc   1300480 May 26 17:02 result.tar.gz
17:02:54 (3129528): run_atlas exited; CPU time 34048.144222
17:02:54 (3129528): called boinc_finish(0)

</stderr_txt>
]]>

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