Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:46:22 (2651156): wrapper (7.7.26015): starting
04:46:22 (2651156): wrapper: running run_atlas (--nthreads 4)
[2024-05-27 04:46:22] Arguments: --nthreads 4
[2024-05-27 04:46:22] Threads: 4
[2024-05-27 04:46:22] Checking for CVMFS
[2024-05-27 04:46:22] No cvmfs_config command found, will try listing directly
[2024-05-27 04:46:22] CVMFS is ok
[2024-05-27 04:46:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-27 04:46:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-27 04:46:22] Further information can be found at the LHC@home message board.
[2024-05-27 04:46:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-27 04:46:22] Checking for apptainer binary...
[2024-05-27 04:46:22] which: no apptainer in ((null))
[2024-05-27 04:46:22] apptainer is not installed, using version from CVMFS
[2024-05-27 04:46:22] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-27 04:46:23] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot60/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2024-05-27 04:46:23] apptainer works
[2024-05-27 04:46:23] Set ATHENA_PROC_NUMBER=4
[2024-05-27 04:46:23] Set ATHENA_CORE_NUMBER=4
[2024-05-27 04:46:23] Starting ATLAS job with PandaID=6210690212
[2024-05-27 04:46:23] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot60/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-27 07:07:12]  *** The last 200 lines of the pilot log: ***
[2024-05-27 07:07:12] 2024-05-27 05:06:50,440 | INFO     | sum of square deviations: 729472282.0
[2024-05-27 07:07:12] 2024-05-27 05:06:50,440 | INFO     | sum of deviations: 51697480663.0
[2024-05-27 07:07:12] 2024-05-27 05:06:50,440 | INFO     | mean x: 1716782042.0
[2024-05-27 07:07:12] 2024-05-27 05:06:50,440 | INFO     | mean y: 2241859.4360902254
[2024-05-27 07:07:12] 2024-05-27 05:06:50,441 | INFO     | -- intersect: -121665583785.0764
[2024-05-27 07:07:12] 2024-05-27 05:06:50,441 | INFO     | intersect: -121665583785.0764
[2024-05-27 07:07:12] 2024-05-27 05:06:50,441 | INFO     | chi2: 3.9408622483874547
[2024-05-27 07:07:12] 2024-05-27 05:06:50,441 | INFO     | current chi2=3.9408622483874547 (change=0.01858180812230956 %)
[2024-05-27 07:07:12] 2024-05-27 05:06:50,441 | INFO     | right removable region: 132
[2024-05-27 07:07:12] 2024-05-27 05:06:50,441 | INFO     | model: linear, x: [1716778321.0, 1716778382.0, 1716778443.0, 1716778504.0, 1716778565.0, 1716778626.0, 1716778687.0, 1716778748.0, 1716778809.0, 1716778870.0, 1716
[2024-05-27 07:07:12] 2024-05-27 05:06:50,441 | INFO     | sum of square deviations: 729472282.0
[2024-05-27 07:07:12] 2024-05-27 05:06:50,441 | INFO     | sum of deviations: 23154112271.0
[2024-05-27 07:07:12] 2024-05-27 05:06:50,441 | INFO     | mean x: 1716782347.0
[2024-05-27 07:07:12] 2024-05-27 05:06:50,441 | INFO     | mean y: 2300343.4210526315
[2024-05-27 07:07:12] 2024-05-27 05:06:50,441 | INFO     | -- intersect: -54489929434.41837
[2024-05-27 07:07:12] 2024-05-27 05:06:50,442 | INFO     | intersect: -54489929434.41837
[2024-05-27 07:07:12] 2024-05-27 05:06:50,442 | INFO     | chi2: 1.4784631112065858
[2024-05-27 07:07:12] 2024-05-27 05:06:50,442 | INFO     | current chi2=1.4784631112065858 (change=62.49073697937663 %)
[2024-05-27 07:07:12] 2024-05-27 05:06:50,442 | INFO     | model: linear, x: [1716778626.0, 1716778687.0, 1716778748.0, 1716778809.0, 1716778870.0, 1716778931.0, 1716778992.0, 1716779053.0, 1716779114.0, 1716779175.0, 1716
[2024-05-27 07:07:12] 2024-05-27 05:06:50,442 | INFO     | sum of square deviations: 650252192.0
[2024-05-27 07:07:12] 2024-05-27 05:06:50,442 | INFO     | sum of deviations: -1217938566.0
[2024-05-27 07:07:12] 2024-05-27 05:06:50,442 | INFO     | mean x: 1716782499.5
[2024-05-27 07:07:12] 2024-05-27 05:06:50,442 | INFO     | mean y: 2347275.234375
[2024-05-27 07:07:12] 2024-05-27 05:06:50,442 | INFO     | -- intersect: 3217923695.121208
[2024-05-27 07:07:12] 2024-05-27 05:06:50,442 | INFO     | intersect: 3217923695.121208
[2024-05-27 07:07:12] 2024-05-27 05:06:50,443 | INFO     | chi2: 0.052354565041656836
[2024-05-27 07:07:12] 2024-05-27 05:06:50,443 | INFO     | current chi2=0.052354565041656836 (change=96.45885212523633 %)
[2024-05-27 07:07:12] 2024-05-27 05:06:50,443 | INFO     | model: linear, x: [1716778931.0, 1716778992.0, 1716779053.0, 1716779114.0, 1716779175.0, 1716779236.0, 1716779297.0, 1716779358.0, 1716779419.0, 1716779480.0, 1716
[2024-05-27 07:07:12] 2024-05-27 05:06:50,443 | INFO     | sum of square deviations: 576985702.0
[2024-05-27 07:07:12] 2024-05-27 05:06:50,443 | INFO     | sum of deviations: -2857558237.0000014
[2024-05-27 07:07:12] 2024-05-27 05:06:50,443 | INFO     | mean x: 1716782652.0
[2024-05-27 07:07:12] 2024-05-27 05:06:50,443 | INFO     | mean y: 2350552.4552845526
[2024-05-27 07:07:12] 2024-05-27 05:06:50,443 | INFO     | -- intersect: 8504825382.171787
[2024-05-27 07:07:12] 2024-05-27 05:06:50,443 | INFO     | intersect: 8504825382.171787
[2024-05-27 07:07:12] 2024-05-27 05:06:50,443 | INFO     | chi2: 0.016798657082956296
[2024-05-27 07:07:12] 2024-05-27 05:06:50,444 | INFO     | current chi2=0.016798657082956296 (change=67.91367272445078 %)
[2024-05-27 07:07:12] 2024-05-27 05:06:50,444 | INFO     | model: linear, x: [1716779236.0, 1716779297.0, 1716779358.0, 1716779419.0, 1716779480.0, 1716779541.0, 1716779602.0, 1716779663.0, 1716779724.0, 1716779785.0, 1716
[2024-05-27 07:07:12] 2024-05-27 05:06:50,444 | INFO     | sum of square deviations: 509440249.5
[2024-05-27 07:07:12] 2024-05-27 05:06:50,444 | INFO     | sum of deviations: -1341957879.5000005
[2024-05-27 07:07:12] 2024-05-27 05:06:50,444 | INFO     | mean x: 1716782804.5
[2024-05-27 07:07:12] 2024-05-27 05:06:50,444 | INFO     | mean y: 2347128.5169491526
[2024-05-27 07:07:12] 2024-05-27 05:06:50,444 | INFO     | -- intersect: 4524663953.993621
[2024-05-27 07:07:12] 2024-05-27 05:06:50,444 | INFO     | intersect: 4524663953.993621
[2024-05-27 07:07:12] 2024-05-27 05:06:50,444 | INFO     | chi2: 0.012624891151182639
[2024-05-27 07:07:12] 2024-05-27 05:06:50,444 | INFO     | current chi2=0.012624891151182639 (change=24.8458308968537 %)
[2024-05-27 07:07:12] 2024-05-27 05:06:50,444 | INFO     | left removable region: 40
[2024-05-27 07:07:12] 2024-05-27 05:06:50,445 | INFO     | model: linear, x: [1716780456.0, 1716780517.0, 1716780578.0, 1716780639.0, 1716780700.0, 1716780761.0, 1716780822.0, 1716780883.0, 1716780944.0, 1716781005.0, 1716
[2024-05-27 07:07:12] 2024-05-27 05:06:50,445 | INFO     | sum of square deviations: 241429643.0
[2024-05-27 07:07:12] 2024-05-27 05:06:50,445 | INFO     | sum of deviations: 467838432.5
[2024-05-27 07:07:12] 2024-05-27 05:06:50,445 | INFO     | mean x: 1716783231.5
[2024-05-27 07:07:12] 2024-05-27 05:06:50,445 | INFO     | mean y: 2342126.6195652173
[2024-05-27 07:07:12] 2024-05-27 05:06:50,445 | INFO     | -- intersect: -3324412475.619749
[2024-05-27 07:07:12] 2024-05-27 05:06:50,445 | INFO     | intersect: -3324412475.619749
[2024-05-27 07:07:12] 2024-05-27 05:06:50,445 | INFO     | chi2: 3.4191129524283475e-05
[2024-05-27 07:07:12] 2024-05-27 05:06:50,445 | INFO     | -- intersect: -3324412475.619749
[2024-05-27 07:07:12] 2024-05-27 05:06:50,445 | INFO     | current memory leak: 1.94 B/s (using 92 data points, chi2=0.00)
[2024-05-27 07:07:12] 2024-05-27 05:06:50,446 | INFO     | ..............................
[2024-05-27 07:07:12] 2024-05-27 05:06:50,446 | INFO     | . Timing measurements:
[2024-05-27 07:07:12] 2024-05-27 05:06:50,446 | INFO     | . get job = 0 s
[2024-05-27 07:07:12] 2024-05-27 05:06:50,446 | INFO     | . initial setup = 1 s
[2024-05-27 07:07:12] 2024-05-27 05:06:50,446 | INFO     | . payload setup = 5 s
[2024-05-27 07:07:12] 2024-05-27 05:06:50,446 | INFO     | . stage-in = 0 s
[2024-05-27 07:07:12] 2024-05-27 05:06:50,446 | INFO     | . payload execution = 8390 s
[2024-05-27 07:07:12] 2024-05-27 05:06:50,446 | INFO     | . stage-out = 0 s
[2024-05-27 07:07:12] 2024-05-27 05:06:50,446 | INFO     | . log creation = 0 s
[2024-05-27 07:07:12] 2024-05-27 05:06:50,446 | INFO     | ..............................
[2024-05-27 07:07:12] 2024-05-27 05:06:50,565 | INFO     | 
[2024-05-27 07:07:12] 2024-05-27 05:06:50,565 | INFO     | job summary report
[2024-05-27 07:07:12] 2024-05-27 05:06:50,565 | INFO     | --------------------------------------------------
[2024-05-27 07:07:12] 2024-05-27 05:06:50,566 | INFO     | PanDA job id: 6210690212
[2024-05-27 07:07:12] 2024-05-27 05:06:50,566 | INFO     | task id: 38776125
[2024-05-27 07:07:12] 2024-05-27 05:06:50,566 | INFO     | errors: (none)
[2024-05-27 07:07:12] 2024-05-27 05:06:50,566 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-27 07:07:12] 2024-05-27 05:06:50,566 | INFO     | pilot state: finished 
[2024-05-27 07:07:12] 2024-05-27 05:06:50,566 | INFO     | transexitcode: 0
[2024-05-27 07:07:12] 2024-05-27 05:06:50,566 | INFO     | exeerrorcode: 0
[2024-05-27 07:07:12] 2024-05-27 05:06:50,566 | INFO     | exeerrordiag: 
[2024-05-27 07:07:12] 2024-05-27 05:06:50,566 | INFO     | exitcode: 0
[2024-05-27 07:07:12] 2024-05-27 05:06:50,566 | INFO     | exitmsg: OK
[2024-05-27 07:07:12] 2024-05-27 05:06:50,566 | INFO     | cpuconsumptiontime: 30770 s
[2024-05-27 07:07:12] 2024-05-27 05:06:50,566 | INFO     | nevents: 400
[2024-05-27 07:07:12] 2024-05-27 05:06:50,566 | INFO     | neventsw: 0
[2024-05-27 07:07:12] 2024-05-27 05:06:50,566 | INFO     | pid: 2663835
[2024-05-27 07:07:12] 2024-05-27 05:06:50,566 | INFO     | pgrp: 2663835
[2024-05-27 07:07:12] 2024-05-27 05:06:50,567 | INFO     | corecount: 4
[2024-05-27 07:07:12] 2024-05-27 05:06:50,567 | INFO     | event service: False
[2024-05-27 07:07:12] 2024-05-27 05:06:50,567 | INFO     | sizes: {0: 2378572, 1: 2378714, 4: 2378920, 11: 2378948, 8399: 2415801, 8403: 2415915}
[2024-05-27 07:07:12] 2024-05-27 05:06:50,567 | INFO     | --------------------------------------------------
[2024-05-27 07:07:12] 2024-05-27 05:06:50,567 | INFO     | 
[2024-05-27 07:07:12] 2024-05-27 05:06:50,567 | INFO     | executing command: ls -lF /scratch/boinc/var/slot60/slots/0
[2024-05-27 07:07:12] 2024-05-27 05:06:50,625 | WARNING  | process 2663835 is no longer using CPU - aborting
[2024-05-27 07:07:12] 2024-05-27 05:06:50,626 | INFO     | aborting job monitoring since job object (job id=6210690212) has expired
[2024-05-27 07:07:12] 2024-05-27 05:06:50,638 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-27 07:07:12] 2024-05-27 05:06:50,639 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-27 07:07:12] 2024-05-27 05:06:50,639 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-27 07:07:12] 2024-05-27 05:06:50,639 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-27 07:07:12] 2024-05-27 05:06:50,639 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-27 07:07:12] 2024-05-27 05:06:50,639 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-27 07:07:12] 2024-05-27 05:06:50,639 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-27 07:07:12] 2024-05-27 05:06:50,639 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-27 07:07:12] 2024-05-27 05:06:50,639 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-27 07:07:12] 2024-05-27 05:06:50,639 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-27 07:07:12] 2024-05-27 05:06:50,639 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-27 07:07:12] 2024-05-27 05:06:50,640 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-27 07:07:12] 2024-05-27 05:06:50,640 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-27 07:07:12] 2024-05-27 05:06:50,640 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-27 07:07:12] 2024-05-27 05:06:50,640 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-27 07:07:12] 2024-05-27 05:06:50,640 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-27 07:07:12] 2024-05-27 05:06:50,640 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-27 07:07:12] 2024-05-27 05:06:50,640 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-27 07:07:12] 2024-05-27 05:06:50,640 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-27 07:07:12] 2024-05-27 05:06:50,640 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-27 07:07:12] 2024-05-27 05:06:50,640 | INFO     | job 6210690212 has completed (purged errors)
[2024-05-27 07:07:12] 2024-05-27 05:06:50,640 | INFO     | overall cleanup function is called
[2024-05-27 07:07:12] 2024-05-27 05:06:51,648 | INFO     | --- collectZombieJob: --- 10, [2663835]
[2024-05-27 07:07:12] 2024-05-27 05:06:51,648 | INFO     | zombie collector waiting for pid 2663835
[2024-05-27 07:07:12] 2024-05-27 05:06:51,648 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-27 07:07:12] 2024-05-27 05:06:52,653 | INFO     | collected zombie processes
[2024-05-27 07:07:12] 2024-05-27 05:06:52,653 | INFO     | will now attempt to kill all subprocesses of pid=2663835
[2024-05-27 07:07:12] 2024-05-27 05:06:52,914 | INFO     | process IDs to be killed: [2663835] (in reverse order)
[2024-05-27 07:07:12] 2024-05-27 05:06:53,047 | WARNING  | found no corresponding commands to process id(s)
[2024-05-27 07:07:12] 2024-05-27 05:06:53,047 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-27 07:07:12] 2024-05-27 05:06:53,062 | INFO     | did not find any defunct processes belonging to 2663835
[2024-05-27 07:07:12] 2024-05-27 05:06:53,072 | INFO     | did not find any defunct processes belonging to 2663835
[2024-05-27 07:07:12] 2024-05-27 05:06:53,072 | INFO     | ready for new job
[2024-05-27 07:07:12] 2024-05-27 05:06:53,072 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-27 07:07:12] 2024-05-27 05:06:53,074 | INFO     | *************************************
[2024-05-27 07:07:12] 2024-05-27 05:06:53,074 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-27 07:07:12] 2024-05-27 05:06:53,074 | INFO     | *************************************
[2024-05-27 07:07:12] 2024-05-27 05:06:53,074 | INFO     | 
[2024-05-27 07:07:12] 2024-05-27 05:06:53,081 | INFO     | architecture information:
[2024-05-27 07:07:12] 2024-05-27 05:06:53,082 | INFO     | executing command: cat /etc/os-release
[2024-05-27 07:07:12] 2024-05-27 05:06:53,098 | INFO     | cat /etc/os-release:
[2024-05-27 07:07:12] NAME="CentOS Linux"
[2024-05-27 07:07:12] VERSION="7 (Core)"
[2024-05-27 07:07:12] ID="centos"
[2024-05-27 07:07:12] ID_LIKE="rhel fedora"
[2024-05-27 07:07:12] VERSION_ID="7"
[2024-05-27 07:07:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-27 07:07:12] ANSI_COLOR="0;31"
[2024-05-27 07:07:12] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-27 07:07:12] HOME_URL="https://www.centos.org/"
[2024-05-27 07:07:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-27 07:07:12] 
[2024-05-27 07:07:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-27 07:07:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-27 07:07:12] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-27 07:07:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-27 07:07:12] 
[2024-05-27 07:07:12] 2024-05-27 05:06:53,098 | INFO     | *************************************
[2024-05-27 07:07:12] 2024-05-27 05:06:53,600 | INFO     | executing command: df -mP /scratch/boinc/var/slot60/slots/0
[2024-05-27 07:07:12] 2024-05-27 05:06:53,621 | INFO     | sufficient remaining disk space (3321818513408 B)
[2024-05-27 07:07:12] 2024-05-27 05:06:53,621 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-27 07:07:12] 2024-05-27 05:06:53,622 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-27 07:07:12] 2024-05-27 05:06:53,622 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-27 07:07:12] 2024-05-27 05:06:53,622 | INFO     | found 0 job(s) in 20 queues
[2024-05-27 07:07:12] 2024-05-27 05:06:53,622 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-27 07:07:12] 2024-05-27 05:06:53,622 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-27 07:07:12] 2024-05-27 05:06:53,979 | INFO     | all data control threads have been joined
[2024-05-27 07:07:12] 2024-05-27 05:06:54,134 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-27 07:07:12] 2024-05-27 05:06:54,135 | INFO     | aborting loop
[2024-05-27 07:07:12] 2024-05-27 05:06:54,498 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-27 07:07:12] 2024-05-27 05:06:54,626 | INFO     | [job] retrieve thread has finished
[2024-05-27 07:07:12] 2024-05-27 05:06:54,680 | INFO     | [data] copytool_in thread has finished
[2024-05-27 07:07:12] 2024-05-27 05:06:54,695 | INFO     | all payload control threads have been joined
[2024-05-27 07:07:12] 2024-05-27 05:06:54,775 | INFO     | [payload] validate_post thread has finished
[2024-05-27 07:07:12] 2024-05-27 05:06:54,795 | INFO     | all job control threads have been joined
[2024-05-27 07:07:12] 2024-05-27 05:06:54,984 | INFO     | [data] control thread has finished
[2024-05-27 07:07:12] 2024-05-27 05:06:55,136 | INFO     | [job] job monitor thread has finished
[2024-05-27 07:07:12] 2024-05-27 05:06:55,274 | INFO     | [job] validate thread has finished
[2024-05-27 07:07:12] 2024-05-27 05:06:55,575 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-27 07:07:12] 2024-05-27 05:06:55,577 | INFO     | [job] create_data_payload thread has finished
[2024-05-27 07:07:12] 2024-05-27 05:06:55,596 | INFO     | [payload] execute_payloads thread has finished
[2024-05-27 07:07:12] 2024-05-27 05:06:55,598 | INFO     | [payload] validate_pre thread has finished
[2024-05-27 07:07:12] 2024-05-27 05:06:55,644 | INFO     | [payload] failed_post thread has finished
[2024-05-27 07:07:12] 2024-05-27 05:06:55,701 | INFO     | [payload] control thread has finished
[2024-05-27 07:07:12] 2024-05-27 05:06:55,801 | INFO     | [job] control thread has finished
[2024-05-27 07:07:12] 2024-05-27 05:06:56,504 | INFO     | [data] copytool_out thread has finished
[2024-05-27 07:07:12] 2024-05-27 05:06:56,581 | INFO     | [job] queue monitor thread has finished
[2024-05-27 07:07:12] 2024-05-27 05:06:57,060 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-27 07:07:12] 2024-05-27 05:07:01,066 | INFO     | [data] queue_monitor thread has finished
[2024-05-27 07:07:12] 2024-05-27 05:07:04,617 | INFO     | job.realtimelogging is not enabled
[2024-05-27 07:07:12] 2024-05-27 05:07:05,623 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-27 07:07:12] 2024-05-27 05:07:06,062 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47960714847296)>', '<ExcThread(monitor, started 47960888198912)>']
[2024-05-27 07:07:12] 2024-05-27 05:07:06,684 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-27 07:07:12] 2024-05-27 05:07:06,684 | INFO     | [monitor] control thread has ended
[2024-05-27 07:07:12] 2024-05-27 05:07:11,087 | INFO     | all workflow threads have been joined
[2024-05-27 07:07:12] 2024-05-27 05:07:11,087 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-27 07:07:12] 2024-05-27 05:07:11,088 | INFO     | traces error code: 0
[2024-05-27 07:07:12] 2024-05-27 05:07:11,088 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-27 07:07:12] 2024-05-27 05:07:11,180 [wrapper] ==== pilot stdout END ====
[2024-05-27 07:07:12] 2024-05-27 05:07:11,182 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-27 07:07:12] 2024-05-27 05:07:11,184 [wrapper] pilotpid: 2656150
[2024-05-27 07:07:12] 2024-05-27 05:07:11,186 [wrapper] Pilot exit status: 0
[2024-05-27 07:07:12] 2024-05-27 05:07:11,193 [wrapper] pandaids: 6210690212
[2024-05-27 07:07:12] 2024-05-27 05:07:11,319 [wrapper] cleanup supervisor_pilot 3453019 2656151
[2024-05-27 07:07:12] 2024-05-27 05:07:11,321 [wrapper] Test setup, not cleaning
[2024-05-27 07:07:12] 2024-05-27 05:07:11,324 [wrapper] ==== wrapper stdout END ====
[2024-05-27 07:07:12] 2024-05-27 05:07:11,326 [wrapper] ==== wrapper stderr END ====
[2024-05-27 07:07:12] 2024-05-27 05:07:11,331 [wrapper] apfmon messages muted
[2024-05-27 07:07:12]  *** Error codes and diagnostics ***
[2024-05-27 07:07:12]     "exeErrorCode": 0,
[2024-05-27 07:07:12]     "exeErrorDiag": "",
[2024-05-27 07:07:12]     "pilotErrorCode": 0,
[2024-05-27 07:07:12]     "pilotErrorDiag": "",
[2024-05-27 07:07:12]  *** Listing of results directory ***
[2024-05-27 07:07:12] total 830964
[2024-05-27 07:07:12] -rw-r--r-- 1 boinc boinc    467845 May 20 18:03 pilot3.tar.gz
[2024-05-27 07:07:12] -rwx------ 1 boinc boinc     32308 May 20 18:20 runpilot2-wrapper.sh
[2024-05-27 07:07:12] -rw-r--r-- 1 boinc boinc      5633 May 20 18:20 queuedata.json
[2024-05-27 07:07:12] -rw-r--r-- 1 boinc boinc       100 May 27 04:46 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-27 07:07:12] -rwxr-xr-x 1 boinc boinc      7986 May 27 04:46 run_atlas
[2024-05-27 07:07:12] -rw-r--r-- 1 boinc boinc       105 May 27 04:46 job.xml
[2024-05-27 07:07:12] -rw-r--r-- 1 boinc boinc      6644 May 27 04:46 init_data.xml
[2024-05-27 07:07:12] -rw-r--r-- 2 boinc boinc 600799231 May 27 04:46 EVNT.38776119._000770.pool.root.1
[2024-05-27 07:07:12] -rw-r--r-- 2 boinc boinc     17537 May 27 04:46 start_atlas.sh
[2024-05-27 07:07:12] drwxrwx--x 2 boinc boinc      4096 May 27 04:46 shared
[2024-05-27 07:07:12] -rw-r--r-- 2 boinc boinc    480010 May 27 04:46 input.tar.gz
[2024-05-27 07:07:12] -rw-r--r-- 1 boinc boinc         0 May 27 04:46 boinc_lockfile
[2024-05-27 07:07:12] -rw-r--r-- 1 boinc boinc      2635 May 27 04:46 pandaJob.out
[2024-05-27 07:07:12] -rw------- 1 boinc boinc       424 May 27 04:46 setup.sh.local
[2024-05-27 07:07:12] -rw------- 1 boinc boinc   1010165 May 27 04:46 agis_schedconf.cvmfs.json
[2024-05-27 07:07:12] -rw------- 1 boinc boinc         0 May 27 04:46 agis_ddmendpoints.agis.ALL.json
[2024-05-27 07:07:12] -rw------- 1 boinc boinc   1317222 May 27 04:46 cric_ddmendpoints.json
[2024-05-27 07:07:12] drwx------ 4 boinc boinc      4096 May 27 04:46 pilot3
[2024-05-27 07:07:12] -rw------- 1 boinc boinc 244266422 May 27 07:06 HITS.38776125._025425.pool.root.1
[2024-05-27 07:07:12] -rw-r--r-- 1 boinc boinc       530 May 27 07:06 boinc_task_state.xml
[2024-05-27 07:07:12] -rw------- 1 boinc boinc      1044 May 27 07:06 memory_monitor_summary.json
[2024-05-27 07:07:12] -rw------- 1 boinc boinc    292753 May 27 07:06 log.38776125._025425.job.log.tgz.1
[2024-05-27 07:07:12] -rw------- 1 boinc boinc      7717 May 27 07:06 heartbeat.json
[2024-05-27 07:07:12] -rw------- 1 boinc boinc        95 May 27 07:06 pilot_heartbeat.json
[2024-05-27 07:07:12] -rw-r--r-- 1 boinc boinc        27 May 27 07:07 wrapper_checkpoint.txt
[2024-05-27 07:07:12] -rw-r--r-- 1 boinc boinc      8192 May 27 07:07 boinc_mmap_file
[2024-05-27 07:07:12] -rw------- 1 boinc boinc      4417 May 27 07:07 pilotlog.txt
[2024-05-27 07:07:12] -rw------- 1 boinc boinc    869728 May 27 07:07 log.38776125._025425.job.log.1
[2024-05-27 07:07:12] -rw------- 1 boinc boinc       357 May 27 07:07 output.list
[2024-05-27 07:07:12] -rw-r--r-- 1 boinc boinc       620 May 27 07:07 runtime_log
[2024-05-27 07:07:12] -rw------- 1 boinc boinc   1177600 May 27 07:07 result.tar.gz
[2024-05-27 07:07:12] -rw-r--r-- 1 boinc boinc     11409 May 27 07:07 runtime_log.err
[2024-05-27 07:07:12] -rw------- 1 boinc boinc       655 May 27 07:07 Qn2MDmCvKT5n7Olcko1bjSoqABFKDmABFKDmOtvXDmwUbKDmrgnMrm.diag
[2024-05-27 07:07:12] -rw-r--r-- 1 boinc boinc     21238 May 27 07:07 stderr.txt
[2024-05-27 07:07:12] HITS file was successfully produced:
[2024-05-27 07:07:12] -rw------- 1 boinc boinc 244266422 May 27 07:06 shared/HITS.pool.root.1
[2024-05-27 07:07:12]  *** Contents of shared directory: ***
[2024-05-27 07:07:12] total 826916
[2024-05-27 07:07:12] -rw-r--r-- 2 boinc boinc 600799231 May 27 04:46 ATLAS.root_0
[2024-05-27 07:07:12] -rw-r--r-- 2 boinc boinc     17537 May 27 04:46 start_atlas.sh
[2024-05-27 07:07:12] -rw-r--r-- 2 boinc boinc    480010 May 27 04:46 input.tar.gz
[2024-05-27 07:07:12] -rw------- 1 boinc boinc 244266422 May 27 07:06 HITS.pool.root.1
[2024-05-27 07:07:12] -rw------- 1 boinc boinc   1177600 May 27 07:07 result.tar.gz
07:07:13 (2651156): run_atlas exited; CPU time 30550.371261
07:07:13 (2651156): called boinc_finish(0)

</stderr_txt>
]]>

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