Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
07:18:35 (157297): wrapper (7.7.26015): starting
07:18:35 (157297): wrapper: running run_atlas (--nthreads 12)
[2024-05-19 07:18:35] Arguments: --nthreads 12
[2024-05-19 07:18:35] Threads: 12
[2024-05-19 07:18:35] Checking for CVMFS
[2024-05-19 07:18:37] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-19 07:18:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-19 07:18:38] Running cvmfs_config stat atlas.cern.ch
[2024-05-19 07:18:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-19 07:18:38] 2.9.2.0 165920 186360 137952 132916 0 115 38209559 45568000 9306 130560 0 627350379 99.779 419087655 14053 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2024-05-19 07:18:38] CVMFS is ok
[2024-05-19 07:18:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-19 07:18:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-19 07:18:38] Further information can be found at the LHC@home message board.
[2024-05-19 07:18:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-19 07:18:38] Checking for apptainer binary...
[2024-05-19 07:18:38] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-19 07:18:38] Running /usr/bin/apptainer --version
[2024-05-19 07:18:38] apptainer version 1.1.8-1.el7
[2024-05-19 07:18:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-19 07:18:42] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0038.triumf.lcg
[2024-05-19 07:18:42] apptainer works
[2024-05-19 07:18:42] Set ATHENA_PROC_NUMBER=12
[2024-05-19 07:18:42] Set ATHENA_CORE_NUMBER=12
[2024-05-19 07:18:42] Starting ATLAS job with PandaID=6209150649
[2024-05-19 07:18:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-19 08:53:09]  *** The last 200 lines of the pilot log: ***
[2024-05-19 08:53:09]  filetype=log
[2024-05-19 08:53:09]  guid=d2686ccd-1d44-46c4-95e7-4f8ca69fc069
[2024-05-19 08:53:09]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-19 08:53:09]  is_tar=False
[2024-05-19 08:53:09]  lfn=log.38776125._018321.job.log.tgz.1
[2024-05-19 08:53:09]  mtime=0
[2024-05-19 08:53:09]  protocol_id=None
[2024-05-19 08:53:09]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-19 08:53:09]  replicas=None
[2024-05-19 08:53:09]  scope=mc23_13p6TeV
[2024-05-19 08:53:09]  status=None
[2024-05-19 08:53:09]  status_code=0
[2024-05-19 08:53:09]  storage_token=
[2024-05-19 08:53:09]  surl=/home/boinc/slots/0/PanDA_Pilot-6209150649/log.38776125._018321.job.log.tgz.1
[2024-05-19 08:53:09]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/79/e6/log.38776125._018321.job.log.tgz.1
[2024-05-19 08:53:09]  workdir=None
[2024-05-19 08:53:09] ]
[2024-05-19 08:53:09] 2024-05-19 15:52:44,799 | INFO     | transferring file log.38776125._018321.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6209150649/log.38776125._018321.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-05-19 08:53:09] 2024-05-19 15:52:44,800 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6209150649/log.38776125._018321.job.log.tgz.1 /home/boinc/slots/0/log.38776125._018321.job.log.t
[2024-05-19 08:53:09] 2024-05-19 15:52:44,829 | INFO     | adding to output.list: log.38776125._018321.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/79/e6/log.38776125._018321.job.log.tg
[2024-05-19 08:53:09] 2024-05-19 15:52:44,829 | INFO     | summary of transferred files:
[2024-05-19 08:53:09] 2024-05-19 15:52:44,829 | INFO     |  -- lfn=log.38776125._018321.job.log.tgz.1, status_code=0, status=transferred
[2024-05-19 08:53:09] 2024-05-19 15:52:44,830 | INFO     | stage-out finished correctly
[2024-05-19 08:53:09] 2024-05-19 15:52:45,883 | INFO     | monitor loop #390: job 0:6209150649 is in state 'finished'
[2024-05-19 08:53:09] 2024-05-19 15:52:45,884 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-19 08:53:09] 2024-05-19 15:52:48,083 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-19 08:53:09] 2024-05-19 15:52:48,387 | INFO     | monitor loop #391: job 0:6209150649 is in state 'finished'
[2024-05-19 08:53:09] 2024-05-19 15:52:48,387 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-19 08:53:09] 2024-05-19 15:52:48,883 | INFO     | job 6209150649 has state=finished
[2024-05-19 08:53:09] 2024-05-19 15:52:48,884 | INFO     | preparing for final server update for job 6209150649 in state='finished'
[2024-05-19 08:53:09] 2024-05-19 15:52:48,884 | INFO     | this job has now completed (state=finished)
[2024-05-19 08:53:09] 2024-05-19 15:52:48,884 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-19 08:53:09] 2024-05-19 15:52:48,884 | INFO     | job 6209150649 has finished - writing final server update
[2024-05-19 08:53:09] 2024-05-19 15:52:48,885 | INFO     | total number of processed events: 400 (read)
[2024-05-19 08:53:09] 2024-05-19 15:52:48,887 | INFO     | executing command: lscpu
[2024-05-19 08:53:09] 2024-05-19 15:52:48,937 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-19 08:53:09] 2024-05-19 15:52:48,937 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-19 08:53:09] 2024-05-19 15:52:48,999 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-19 08:53:09] 2024-05-19 15:52:50,891 | INFO     | monitor loop #392: job 0:6209150649 is in state 'finished'
[2024-05-19 08:53:09] 2024-05-19 15:52:50,894 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-19 08:53:09] 2024-05-19 15:52:53,398 | INFO     | monitor loop #393: job 0:6209150649 is in state 'finished'
[2024-05-19 08:53:09] 2024-05-19 15:52:53,398 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-19 08:53:09] 2024-05-19 15:52:53,498 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-19 08:53:09] 2024-05-19 15:52:53,498 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6209150649/memory_monitor_summary.json (trf name=prmon)
[2024-05-19 08:53:09] 2024-05-19 15:52:53,499 | INFO     | extracted standard info from prmon json
[2024-05-19 08:53:09] 2024-05-19 15:52:53,499 | INFO     | extracted standard memory fields from prmon json
[2024-05-19 08:53:09] 2024-05-19 15:52:53,499 | WARNING  | GPU info not found in prmon json
[2024-05-19 08:53:09] 2024-05-19 15:52:53,500 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-19 08:53:09] 2024-05-19 15:52:53,500 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-19 08:53:09] 2024-05-19 15:52:53,502 | INFO     | fitting pss+swap vs Time
[2024-05-19 08:53:09] 2024-05-19 15:52:53,502 | INFO     | model: linear, x: [1716128723.0, 1716128784.0, 1716128845.0, 1716128906.0, 1716128967.0, 1716129028.0, 1716129089.0, 1716129153.0, 1716129217.0, 1716129273.0, 1716
[2024-05-19 08:53:09] 2024-05-19 15:52:53,502 | INFO     | sum of square deviations: 183719968.8928575
[2024-05-19 08:53:09] 2024-05-19 15:52:53,502 | INFO     | sum of deviations: 27517693509.82143
[2024-05-19 08:53:09] 2024-05-19 15:52:53,503 | INFO     | mean x: 1716131254.9642856
[2024-05-19 08:53:09] 2024-05-19 15:52:53,503 | INFO     | mean y: 2677078.9404761903
[2024-05-19 08:53:09] 2024-05-19 15:52:53,503 | INFO     | -- intersect: -257040551163.0188
[2024-05-19 08:53:09] 2024-05-19 15:52:53,503 | INFO     | intersect: -257040551163.0188
[2024-05-19 08:53:09] 2024-05-19 15:52:53,503 | INFO     | chi2: 2.826903905657364
[2024-05-19 08:53:09] 2024-05-19 15:52:53,503 | INFO     | -- intersect: -257040551163.0188
[2024-05-19 08:53:09] 2024-05-19 15:52:53,503 | INFO     | current memory leak: 149.78 B/s (using 84 data points, chi2=2.83)
[2024-05-19 08:53:09] 2024-05-19 15:52:53,504 | INFO     | ..............................
[2024-05-19 08:53:09] 2024-05-19 15:52:53,504 | INFO     | . Timing measurements:
[2024-05-19 08:53:09] 2024-05-19 15:52:53,504 | INFO     | . get job = 0 s
[2024-05-19 08:53:09] 2024-05-19 15:52:53,504 | INFO     | . initial setup = 2 s
[2024-05-19 08:53:09] 2024-05-19 15:52:53,504 | INFO     | . payload setup = 6 s
[2024-05-19 08:53:09] 2024-05-19 15:52:53,504 | INFO     | . stage-in = 0 s
[2024-05-19 08:53:09] 2024-05-19 15:52:53,504 | INFO     | . payload execution = 5523 s
[2024-05-19 08:53:09] 2024-05-19 15:52:53,504 | INFO     | . stage-out = 0 s
[2024-05-19 08:53:09] 2024-05-19 15:52:53,504 | INFO     | . log creation = 0 s
[2024-05-19 08:53:09] 2024-05-19 15:52:53,504 | INFO     | ..............................
[2024-05-19 08:53:09] 2024-05-19 15:52:53,567 | INFO     | 
[2024-05-19 08:53:09] 2024-05-19 15:52:53,567 | INFO     | job summary report
[2024-05-19 08:53:09] 2024-05-19 15:52:53,567 | INFO     | --------------------------------------------------
[2024-05-19 08:53:09] 2024-05-19 15:52:53,567 | INFO     | PanDA job id: 6209150649
[2024-05-19 08:53:09] 2024-05-19 15:52:53,567 | INFO     | task id: 38776125
[2024-05-19 08:53:09] 2024-05-19 15:52:53,567 | INFO     | errors: (none)
[2024-05-19 08:53:09] 2024-05-19 15:52:53,567 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-19 08:53:09] 2024-05-19 15:52:53,568 | INFO     | pilot state: finished 
[2024-05-19 08:53:09] 2024-05-19 15:52:53,568 | INFO     | transexitcode: 0
[2024-05-19 08:53:09] 2024-05-19 15:52:53,568 | INFO     | exeerrorcode: 0
[2024-05-19 08:53:09] 2024-05-19 15:52:53,568 | INFO     | exeerrordiag: 
[2024-05-19 08:53:09] 2024-05-19 15:52:53,568 | INFO     | exitcode: 0
[2024-05-19 08:53:09] 2024-05-19 15:52:53,568 | INFO     | exitmsg: OK
[2024-05-19 08:53:09] 2024-05-19 15:52:53,568 | INFO     | cpuconsumptiontime: 32742 s
[2024-05-19 08:53:09] 2024-05-19 15:52:53,568 | INFO     | nevents: 400
[2024-05-19 08:53:09] 2024-05-19 15:52:53,568 | INFO     | neventsw: 0
[2024-05-19 08:53:09] 2024-05-19 15:52:53,568 | INFO     | pid: 185540
[2024-05-19 08:53:09] 2024-05-19 15:52:53,568 | INFO     | pgrp: 185540
[2024-05-19 08:53:09] 2024-05-19 15:52:53,568 | INFO     | corecount: 12
[2024-05-19 08:53:09] 2024-05-19 15:52:53,568 | INFO     | event service: False
[2024-05-19 08:53:09] 2024-05-19 15:52:53,568 | INFO     | sizes: {0: 2392195, 10: 2392401, 11: 2392429, 5560: 2418968, 5561: 2427977, 5565: 2427977, 5570: 2428105}
[2024-05-19 08:53:09] 2024-05-19 15:52:53,568 | INFO     | --------------------------------------------------
[2024-05-19 08:53:09] 2024-05-19 15:52:53,568 | INFO     | 
[2024-05-19 08:53:09] 2024-05-19 15:52:53,568 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-19 08:53:09] 2024-05-19 15:52:53,610 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-19 08:53:09] 2024-05-19 15:52:53,610 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-19 08:53:09] 2024-05-19 15:52:53,610 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-19 08:53:09] 2024-05-19 15:52:53,610 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-19 08:53:09] 2024-05-19 15:52:53,610 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-19 08:53:09] 2024-05-19 15:52:53,610 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-19 08:53:09] 2024-05-19 15:52:53,610 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-19 08:53:09] 2024-05-19 15:52:53,610 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-19 08:53:09] 2024-05-19 15:52:53,610 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-19 08:53:09] 2024-05-19 15:52:53,611 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-19 08:53:09] 2024-05-19 15:52:53,611 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-19 08:53:09] 2024-05-19 15:52:53,611 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-19 08:53:09] 2024-05-19 15:52:53,611 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-19 08:53:09] 2024-05-19 15:52:53,611 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-19 08:53:09] 2024-05-19 15:52:53,611 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-19 08:53:09] 2024-05-19 15:52:53,611 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-19 08:53:09] 2024-05-19 15:52:53,611 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-19 08:53:09] 2024-05-19 15:52:53,611 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-19 08:53:09] 2024-05-19 15:52:53,611 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-19 08:53:09] 2024-05-19 15:52:53,611 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-19 08:53:09] 2024-05-19 15:52:53,611 | INFO     | job 6209150649 has completed (purged errors)
[2024-05-19 08:53:09] 2024-05-19 15:52:53,611 | INFO     | overall cleanup function is called
[2024-05-19 08:53:09] 2024-05-19 15:52:54,620 | INFO     | --- collectZombieJob: --- 10, [185540]
[2024-05-19 08:53:09] 2024-05-19 15:52:54,620 | INFO     | zombie collector waiting for pid 185540
[2024-05-19 08:53:09] 2024-05-19 15:52:54,620 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-19 08:53:09] 2024-05-19 15:52:55,626 | INFO     | collected zombie processes
[2024-05-19 08:53:09] 2024-05-19 15:52:55,626 | INFO     | will now attempt to kill all subprocesses of pid=185540
[2024-05-19 08:53:09] 2024-05-19 15:52:55,765 | INFO     | process IDs to be killed: [185540] (in reverse order)
[2024-05-19 08:53:09] 2024-05-19 15:52:55,887 | WARNING  | found no corresponding commands to process id(s)
[2024-05-19 08:53:09] 2024-05-19 15:52:55,887 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-19 08:53:09] 2024-05-19 15:52:55,894 | INFO     | did not find any defunct processes belonging to 185540
[2024-05-19 08:53:09] 2024-05-19 15:52:55,900 | INFO     | did not find any defunct processes belonging to 185540
[2024-05-19 08:53:09] 2024-05-19 15:52:55,900 | INFO     | ready for new job
[2024-05-19 08:53:09] 2024-05-19 15:52:55,900 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-19 08:53:09] 2024-05-19 15:52:55,902 | INFO     | *************************************
[2024-05-19 08:53:09] 2024-05-19 15:52:55,902 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-19 08:53:09] 2024-05-19 15:52:55,902 | INFO     | *************************************
[2024-05-19 08:53:09] 2024-05-19 15:52:55,902 | INFO     | 
[2024-05-19 08:53:09] 2024-05-19 15:52:55,906 | INFO     | architecture information:
[2024-05-19 08:53:09] 2024-05-19 15:52:55,906 | INFO     | executing command: cat /etc/os-release
[2024-05-19 08:53:09] 2024-05-19 15:52:55,939 | INFO     | cat /etc/os-release:
[2024-05-19 08:53:09] NAME="CentOS Linux"
[2024-05-19 08:53:09] VERSION="7 (Core)"
[2024-05-19 08:53:09] ID="centos"
[2024-05-19 08:53:09] ID_LIKE="rhel fedora"
[2024-05-19 08:53:09] VERSION_ID="7"
[2024-05-19 08:53:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-19 08:53:09] ANSI_COLOR="0;31"
[2024-05-19 08:53:09] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-19 08:53:09] HOME_URL="https://www.centos.org/"
[2024-05-19 08:53:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-19 08:53:09] 
[2024-05-19 08:53:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-19 08:53:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-19 08:53:09] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-19 08:53:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-19 08:53:09] 
[2024-05-19 08:53:09] 2024-05-19 15:52:55,939 | INFO     | *************************************
[2024-05-19 08:53:09] 2024-05-19 15:52:56,443 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-19 08:53:09] 2024-05-19 15:52:56,477 | INFO     | sufficient remaining disk space (2077968302080 B)
[2024-05-19 08:53:09] 2024-05-19 15:52:56,478 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-19 08:53:09] 2024-05-19 15:52:56,478 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-19 08:53:09] 2024-05-19 15:52:56,720 | INFO     | found 0 job(s) in 20 queues
[2024-05-19 08:53:09] 2024-05-19 15:52:56,720 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-19 08:53:09] 2024-05-19 15:52:56,720 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-19 08:53:09] 2024-05-19 15:52:56,906 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-19 08:53:09] 2024-05-19 15:52:56,907 | INFO     | aborting loop
[2024-05-19 08:53:09] 2024-05-19 15:52:56,922 | INFO     | all data control threads have been joined
[2024-05-19 08:53:09] 2024-05-19 15:52:57,145 | INFO     | all job control threads have been joined
[2024-05-19 08:53:09] 2024-05-19 15:52:57,230 | INFO     | all payload control threads have been joined
[2024-05-19 08:53:09] 2024-05-19 15:52:57,484 | INFO     | [job] retrieve thread has finished
[2024-05-19 08:53:09] 2024-05-19 15:52:57,834 | INFO     | [payload] validate_post thread has finished
[2024-05-19 08:53:09] 2024-05-19 15:52:57,894 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-19 08:53:09] 2024-05-19 15:52:57,912 | INFO     | [job] job monitor thread has finished
[2024-05-19 08:53:09] 2024-05-19 15:52:57,928 | INFO     | [data] control thread has finished
[2024-05-19 08:53:09] 2024-05-19 15:52:57,994 | INFO     | [payload] execute_payloads thread has finished
[2024-05-19 08:53:09] 2024-05-19 15:52:58,149 | INFO     | [job] control thread has finished
[2024-05-19 08:53:09] 2024-05-19 15:52:58,236 | INFO     | [payload] control thread has finished
[2024-05-19 08:53:09] 2024-05-19 15:52:58,521 | INFO     | [job] validate thread has finished
[2024-05-19 08:53:09] 2024-05-19 15:52:58,550 | INFO     | [data] copytool_in thread has finished
[2024-05-19 08:53:09] 2024-05-19 15:52:58,578 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-19 08:53:09] 2024-05-19 15:52:58,685 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-19 08:53:09] 2024-05-19 15:52:58,686 | INFO     | [payload] failed_post thread has finished
[2024-05-19 08:53:09] 2024-05-19 15:52:58,698 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-19 08:53:09] 2024-05-19 15:52:58,768 | INFO     | [job] create_data_payload thread has finished
[2024-05-19 08:53:09] 2024-05-19 15:52:58,882 | INFO     | [payload] validate_pre thread has finished
[2024-05-19 08:53:09] 2024-05-19 15:52:59,584 | INFO     | [job] queue monitor thread has finished
[2024-05-19 08:53:09] 2024-05-19 15:52:59,900 | INFO     | [data] copytool_out thread has finished
[2024-05-19 08:53:09] 2024-05-19 15:53:02,693 | INFO     | [data] queue_monitor thread has finished
[2024-05-19 08:53:09] 2024-05-19 15:53:03,648 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139900470851392)>', '<ExcThread(monitor, started 139899827119872)>']
[2024-05-19 08:53:09] 2024-05-19 15:53:03,757 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-19 08:53:09] 2024-05-19 15:53:03,757 | INFO     | [monitor] control thread has ended
[2024-05-19 08:53:09] 2024-05-19 15:53:08,673 | INFO     | all workflow threads have been joined
[2024-05-19 08:53:09] 2024-05-19 15:53:08,673 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-19 08:53:09] 2024-05-19 15:53:08,673 | INFO     | traces error code: 0
[2024-05-19 08:53:09] 2024-05-19 15:53:08,674 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-19 08:53:09] 2024-05-19 15:53:08,739 [wrapper] ==== pilot stdout END ====
[2024-05-19 08:53:09] 2024-05-19 15:53:08,747 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-19 08:53:09] 2024-05-19 15:53:08,754 [wrapper] pilotpid: 170587
[2024-05-19 08:53:09] 2024-05-19 15:53:08,760 [wrapper] Pilot exit status: 0
[2024-05-19 08:53:09] 2024-05-19 15:53:08,781 [wrapper] pandaids: 6209150649
[2024-05-19 08:53:09] 2024-05-19 15:53:08,847 [wrapper] cleanup: SIGTERM to supervisor_pilot 131368 170588
[2024-05-19 08:53:09] 2024-05-19 15:53:08,853 [wrapper] Test setup, not cleaning
[2024-05-19 08:53:09] 2024-05-19 15:53:08,859 [wrapper] ==== wrapper stdout END ====
[2024-05-19 08:53:09] 2024-05-19 15:53:08,865 [wrapper] ==== wrapper stderr END ====
[2024-05-19 08:53:09] 2024-05-19 15:53:08,876 [wrapper] apfmon messages muted
[2024-05-19 08:53:09]  *** Error codes and diagnostics ***
[2024-05-19 08:53:09]     "exeErrorCode": 0,
[2024-05-19 08:53:09]     "exeErrorDiag": "",
[2024-05-19 08:53:09]     "pilotErrorCode": 0,
[2024-05-19 08:53:09]     "pilotErrorDiag": "",
[2024-05-19 08:53:09]  *** Listing of results directory ***
[2024-05-19 08:53:09] total 829504
[2024-05-19 08:53:09] -rw-r--r-- 1 boinc boinc    467845 May 18 12:00 pilot3.tar.gz
[2024-05-19 08:53:09] -rw-r--r-- 1 boinc boinc      5633 May 18 12:11 queuedata.json
[2024-05-19 08:53:09] -rwx------ 1 boinc boinc     32251 May 18 12:12 runpilot2-wrapper.sh
[2024-05-19 08:53:09] -rw-r--r-- 1 boinc boinc       100 May 19 07:18 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-19 08:53:09] -rwxr-xr-x 1 boinc boinc      7986 May 19 07:18 run_atlas
[2024-05-19 08:53:09] -rw-r--r-- 1 boinc boinc       105 May 19 07:18 job.xml
[2024-05-19 08:53:09] -rw-r--r-- 1 boinc boinc      6628 May 19 07:18 init_data.xml
[2024-05-19 08:53:09] -rw-r--r-- 2 boinc boinc 597648361 May 19 07:18 EVNT.38776119._000587.pool.root.1
[2024-05-19 08:53:09] drwxrwx--x 2 boinc boinc      4096 May 19 07:18 shared
[2024-05-19 08:53:09] -rw-r--r-- 2 boinc boinc    480004 May 19 07:18 input.tar.gz
[2024-05-19 08:53:09] -rw-r--r-- 2 boinc boinc     17537 May 19 07:18 start_atlas.sh
[2024-05-19 08:53:09] -rw-r--r-- 1 boinc boinc         0 May 19 07:18 boinc_lockfile
[2024-05-19 08:53:09] -rw-r--r-- 1 boinc boinc      2635 May 19 07:18 pandaJob.out
[2024-05-19 08:53:09] -rw------- 1 boinc boinc       424 May 19 07:18 setup.sh.local
[2024-05-19 08:53:09] -rw------- 1 boinc boinc   1014069 May 19 07:19 agis_schedconf.cvmfs.json
[2024-05-19 08:53:09] -rw------- 1 boinc boinc         0 May 19 07:19 agis_ddmendpoints.agis.ALL.json
[2024-05-19 08:53:09] -rw------- 1 boinc boinc   1324701 May 19 07:19 cric_ddmendpoints.json
[2024-05-19 08:53:09] drwx------ 4 boinc boinc      4096 May 19 07:19 pilot3
[2024-05-19 08:53:09] -rw------- 1 boinc boinc 246473475 May 19 08:51 HITS.38776125._018321.pool.root.1
[2024-05-19 08:53:09] -rw-r--r-- 1 boinc boinc       530 May 19 08:51 boinc_task_state.xml
[2024-05-19 08:53:09] -rw------- 1 boinc boinc      1059 May 19 08:52 memory_monitor_summary.json
[2024-05-19 08:53:09] -rw------- 1 boinc boinc        95 May 19 08:52 pilot_heartbeat.json
[2024-05-19 08:53:09] -rw-r--r-- 1 boinc boinc      8192 May 19 08:52 boinc_mmap_file
[2024-05-19 08:53:09] -rw-r--r-- 1 boinc boinc        27 May 19 08:52 wrapper_checkpoint.txt
[2024-05-19 08:53:09] -rw------- 1 boinc boinc    376379 May 19 08:52 log.38776125._018321.job.log.tgz.1
[2024-05-19 08:53:09] -rw------- 1 boinc boinc      7786 May 19 08:52 heartbeat.json
[2024-05-19 08:53:09] -rw------- 1 boinc boinc      4210 May 19 08:53 pilotlog.txt
[2024-05-19 08:53:09] -rw------- 1 boinc boinc    503227 May 19 08:53 log.38776125._018321.job.log.1
[2024-05-19 08:53:09] -rw------- 1 boinc boinc       357 May 19 08:53 output.list
[2024-05-19 08:53:09] -rw-r--r-- 1 boinc boinc       620 May 19 08:53 runtime_log
[2024-05-19 08:53:09] -rw------- 1 boinc boinc    901120 May 19 08:53 result.tar.gz
[2024-05-19 08:53:09] -rw------- 1 boinc boinc       657 May 19 08:53 xgNKDmaeeS5n7Olcko1bjSoqABFKDmABFKDmOtvXDmeMaKDmMiOS2m.diag
[2024-05-19 08:53:09] -rw-r--r-- 1 boinc boinc     11286 May 19 08:53 runtime_log.err
[2024-05-19 08:53:09] -rw-r--r-- 1 boinc boinc     21748 May 19 08:53 stderr.txt
[2024-05-19 08:53:09] HITS file was successfully produced:
[2024-05-19 08:53:09] -rw------- 1 boinc boinc 246473475 May 19 08:51 shared/HITS.pool.root.1
[2024-05-19 08:53:09]  *** Contents of shared directory: ***
[2024-05-19 08:53:09] total 825724
[2024-05-19 08:53:09] -rw-r--r-- 2 boinc boinc 597648361 May 19 07:18 ATLAS.root_0
[2024-05-19 08:53:09] -rw-r--r-- 2 boinc boinc    480004 May 19 07:18 input.tar.gz
[2024-05-19 08:53:09] -rw-r--r-- 2 boinc boinc     17537 May 19 07:18 start_atlas.sh
[2024-05-19 08:53:09] -rw------- 1 boinc boinc 246473475 May 19 08:51 HITS.pool.root.1
[2024-05-19 08:53:09] -rw------- 1 boinc boinc    901120 May 19 08:53 result.tar.gz
08:53:11 (157297): run_atlas exited; CPU time 32567.691942
08:53:11 (157297): called boinc_finish(0)

</stderr_txt>
]]>

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