Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
20:23:45 (257332): wrapper (7.7.26015): starting
20:23:45 (257332): wrapper: running run_atlas (--nthreads 12)
[2024-05-18 20:23:45] Arguments: --nthreads 12
[2024-05-18 20:23:45] Threads: 12
[2024-05-18 20:23:45] Checking for CVMFS
[2024-05-18 20:23:45] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-18 20:23:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-18 20:23:45] Running cvmfs_config stat atlas.cern.ch
[2024-05-18 20:23:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-18 20:23:45] 2.10.1.0 2741 174556 143232 132900 1 132 33564858 45568000 12068 130560 0 1163330477 99.773 694554372 16155 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2024-05-18 20:23:45] CVMFS is ok
[2024-05-18 20:23:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-18 20:23:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-18 20:23:46] Further information can be found at the LHC@home message board.
[2024-05-18 20:23:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-18 20:23:46] Checking for apptainer binary...
[2024-05-18 20:23:46] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-18 20:23:46] Running /usr/bin/apptainer --version
[2024-05-18 20:23:46] apptainer version 1.1.8-1.el7
[2024-05-18 20:23:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-18 20:23:47] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0079.triumf.lcg
[2024-05-18 20:23:47] apptainer works
[2024-05-18 20:23:47] Set ATHENA_PROC_NUMBER=12
[2024-05-18 20:23:47] Set ATHENA_CORE_NUMBER=12
[2024-05-18 20:23:47] Starting ATLAS job with PandaID=6209148686
[2024-05-18 20:23:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-18 21:41:35]  *** The last 200 lines of the pilot log: ***
[2024-05-18 21:41:35]  guid=63623074-35b6-4cc7-99f9-594b86db9233
[2024-05-18 21:41:35]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-18 21:41:35]  is_tar=False
[2024-05-18 21:41:35]  lfn=log.38776125._017450.job.log.tgz.1
[2024-05-18 21:41:35]  mtime=0
[2024-05-18 21:41:35]  protocol_id=None
[2024-05-18 21:41:35]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-18 21:41:35]  replicas=None
[2024-05-18 21:41:35]  scope=mc23_13p6TeV
[2024-05-18 21:41:35]  status=None
[2024-05-18 21:41:35]  status_code=0
[2024-05-18 21:41:35]  storage_token=
[2024-05-18 21:41:35]  surl=/home/boinc/slots/0/PanDA_Pilot-6209148686/log.38776125._017450.job.log.tgz.1
[2024-05-18 21:41:35]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4a/e0/log.38776125._017450.job.log.tgz.1
[2024-05-18 21:41:35]  workdir=None
[2024-05-18 21:41:35] ]
[2024-05-18 21:41:35] 2024-05-19 04:41:12,201 | INFO     | transferring file log.38776125._017450.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6209148686/log.38776125._017450.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-05-18 21:41:35] 2024-05-19 04:41:12,201 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6209148686/log.38776125._017450.job.log.tgz.1 /home/boinc/slots/0/log.38776125._017450.job.log.t
[2024-05-18 21:41:35] 2024-05-19 04:41:12,222 | INFO     | adding to output.list: log.38776125._017450.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4a/e0/log.38776125._017450.job.log.tg
[2024-05-18 21:41:35] 2024-05-19 04:41:12,223 | INFO     | summary of transferred files:
[2024-05-18 21:41:35] 2024-05-19 04:41:12,223 | INFO     |  -- lfn=log.38776125._017450.job.log.tgz.1, status_code=0, status=transferred
[2024-05-18 21:41:35] 2024-05-19 04:41:12,223 | INFO     | stage-out finished correctly
[2024-05-18 21:41:35] 2024-05-19 04:41:12,284 | INFO     | monitor loop #348: job 0:6209148686 is in state 'finished'
[2024-05-18 21:41:35] 2024-05-19 04:41:12,284 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 21:41:35] 2024-05-19 04:41:14,375 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-18 21:41:35] 2024-05-19 04:41:14,787 | INFO     | monitor loop #349: job 0:6209148686 is in state 'finished'
[2024-05-18 21:41:35] 2024-05-19 04:41:14,787 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 21:41:35] 2024-05-19 04:41:15,838 | INFO     | job 6209148686 has state=finished
[2024-05-18 21:41:35] 2024-05-19 04:41:15,839 | INFO     | preparing for final server update for job 6209148686 in state='finished'
[2024-05-18 21:41:35] 2024-05-19 04:41:15,839 | INFO     | this job has now completed (state=finished)
[2024-05-18 21:41:35] 2024-05-19 04:41:15,839 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-18 21:41:35] 2024-05-19 04:41:15,840 | INFO     | job 6209148686 has finished - writing final server update
[2024-05-18 21:41:35] 2024-05-19 04:41:15,840 | INFO     | total number of processed events: 400 (read)
[2024-05-18 21:41:35] 2024-05-19 04:41:15,846 | INFO     | executing command: lscpu
[2024-05-18 21:41:35] 2024-05-19 04:41:15,913 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-18 21:41:35] 2024-05-19 04:41:15,914 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-18 21:41:35] 2024-05-19 04:41:15,966 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-18 21:41:35] 2024-05-19 04:41:17,290 | INFO     | monitor loop #350: job 0:6209148686 is in state 'finished'
[2024-05-18 21:41:35] 2024-05-19 04:41:17,291 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 21:41:35] 2024-05-19 04:41:18,957 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-18 21:41:35] 2024-05-19 04:41:18,958 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6209148686/memory_monitor_summary.json (trf name=prmon)
[2024-05-18 21:41:35] 2024-05-19 04:41:18,958 | INFO     | extracted standard info from prmon json
[2024-05-18 21:41:35] 2024-05-19 04:41:18,958 | INFO     | extracted standard memory fields from prmon json
[2024-05-18 21:41:35] 2024-05-19 04:41:18,958 | WARNING  | GPU info not found in prmon json
[2024-05-18 21:41:35] 2024-05-19 04:41:18,959 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-18 21:41:35] 2024-05-19 04:41:18,959 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-18 21:41:35] 2024-05-19 04:41:18,960 | INFO     | fitting pss+swap vs Time
[2024-05-18 21:41:35] 2024-05-19 04:41:18,960 | INFO     | model: linear, x: [1716089362.0, 1716089423.0, 1716089484.0, 1716089545.0, 1716089606.0, 1716089667.0, 1716089728.0, 1716089789.0, 1716089850.0, 1716089911.0, 1716
[2024-05-18 21:41:35] 2024-05-19 04:41:18,960 | INFO     | sum of square deviations: 101849762.28985497
[2024-05-18 21:41:35] 2024-05-19 04:41:18,960 | INFO     | sum of deviations: 18400278446.289856
[2024-05-18 21:41:35] 2024-05-19 04:41:18,960 | INFO     | mean x: 1716091436.1014493
[2024-05-18 21:41:35] 2024-05-19 04:41:18,960 | INFO     | mean y: 2732759.1014492754
[2024-05-18 21:41:35] 2024-05-19 04:41:18,960 | INFO     | -- intersect: -310028037599.4601
[2024-05-18 21:41:35] 2024-05-19 04:41:18,960 | INFO     | intersect: -310028037599.4601
[2024-05-18 21:41:35] 2024-05-19 04:41:18,960 | INFO     | chi2: 2.5301737550524033
[2024-05-18 21:41:35] 2024-05-19 04:41:18,961 | INFO     | -- intersect: -310028037599.4601
[2024-05-18 21:41:35] 2024-05-19 04:41:18,961 | INFO     | current memory leak: 180.66 B/s (using 69 data points, chi2=2.53)
[2024-05-18 21:41:35] 2024-05-19 04:41:18,961 | INFO     | ..............................
[2024-05-18 21:41:35] 2024-05-19 04:41:18,961 | INFO     | . Timing measurements:
[2024-05-18 21:41:35] 2024-05-19 04:41:18,961 | INFO     | . get job = 0 s
[2024-05-18 21:41:35] 2024-05-19 04:41:18,961 | INFO     | . initial setup = 1 s
[2024-05-18 21:41:35] 2024-05-19 04:41:18,961 | INFO     | . payload setup = 4 s
[2024-05-18 21:41:35] 2024-05-19 04:41:18,961 | INFO     | . stage-in = 0 s
[2024-05-18 21:41:35] 2024-05-19 04:41:18,961 | INFO     | . payload execution = 4614 s
[2024-05-18 21:41:35] 2024-05-19 04:41:18,961 | INFO     | . stage-out = 0 s
[2024-05-18 21:41:35] 2024-05-19 04:41:18,961 | INFO     | . log creation = 0 s
[2024-05-18 21:41:35] 2024-05-19 04:41:18,961 | INFO     | ..............................
[2024-05-18 21:41:35] 2024-05-19 04:41:19,409 | INFO     | 
[2024-05-18 21:41:35] 2024-05-19 04:41:19,409 | INFO     | job summary report
[2024-05-18 21:41:35] 2024-05-19 04:41:19,409 | INFO     | --------------------------------------------------
[2024-05-18 21:41:35] 2024-05-19 04:41:19,409 | INFO     | PanDA job id: 6209148686
[2024-05-18 21:41:35] 2024-05-19 04:41:19,409 | INFO     | task id: 38776125
[2024-05-18 21:41:35] 2024-05-19 04:41:19,409 | INFO     | errors: (none)
[2024-05-18 21:41:35] 2024-05-19 04:41:19,409 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-18 21:41:35] 2024-05-19 04:41:19,409 | INFO     | pilot state: finished 
[2024-05-18 21:41:35] 2024-05-19 04:41:19,410 | INFO     | transexitcode: 0
[2024-05-18 21:41:35] 2024-05-19 04:41:19,410 | INFO     | exeerrorcode: 0
[2024-05-18 21:41:35] 2024-05-19 04:41:19,410 | INFO     | exeerrordiag: 
[2024-05-18 21:41:35] 2024-05-19 04:41:19,410 | INFO     | exitcode: 0
[2024-05-18 21:41:35] 2024-05-19 04:41:19,410 | INFO     | exitmsg: OK
[2024-05-18 21:41:35] 2024-05-19 04:41:19,410 | INFO     | cpuconsumptiontime: 32064 s
[2024-05-18 21:41:35] 2024-05-19 04:41:19,410 | INFO     | nevents: 400
[2024-05-18 21:41:35] 2024-05-19 04:41:19,410 | INFO     | neventsw: 0
[2024-05-18 21:41:35] 2024-05-19 04:41:19,410 | INFO     | pid: 276495
[2024-05-18 21:41:35] 2024-05-19 04:41:19,410 | INFO     | pgrp: 276495
[2024-05-18 21:41:35] 2024-05-19 04:41:19,410 | INFO     | corecount: 12
[2024-05-18 21:41:35] 2024-05-19 04:41:19,411 | INFO     | event service: False
[2024-05-18 21:41:35] 2024-05-19 04:41:19,411 | INFO     | sizes: {0: 2392195, 1: 2392195, 4: 2392429, 11: 2392457, 4622: 2418561, 4623: 2427515, 4625: 2427699, 4630: 2427869}
[2024-05-18 21:41:35] 2024-05-19 04:41:19,411 | INFO     | --------------------------------------------------
[2024-05-18 21:41:35] 2024-05-19 04:41:19,411 | INFO     | 
[2024-05-18 21:41:35] 2024-05-19 04:41:19,411 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-18 21:41:35] 2024-05-19 04:41:19,438 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-18 21:41:35] 2024-05-19 04:41:19,439 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-18 21:41:35] 2024-05-19 04:41:19,439 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-18 21:41:35] 2024-05-19 04:41:19,439 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-18 21:41:35] 2024-05-19 04:41:19,439 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-18 21:41:35] 2024-05-19 04:41:19,439 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-18 21:41:35] 2024-05-19 04:41:19,439 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-18 21:41:35] 2024-05-19 04:41:19,439 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-18 21:41:35] 2024-05-19 04:41:19,439 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-18 21:41:35] 2024-05-19 04:41:19,440 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-18 21:41:35] 2024-05-19 04:41:19,440 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-18 21:41:35] 2024-05-19 04:41:19,440 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-18 21:41:35] 2024-05-19 04:41:19,440 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-18 21:41:35] 2024-05-19 04:41:19,440 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-18 21:41:35] 2024-05-19 04:41:19,440 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-18 21:41:35] 2024-05-19 04:41:19,440 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-18 21:41:35] 2024-05-19 04:41:19,440 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-18 21:41:35] 2024-05-19 04:41:19,440 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-18 21:41:35] 2024-05-19 04:41:19,440 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-18 21:41:35] 2024-05-19 04:41:19,440 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-18 21:41:35] 2024-05-19 04:41:19,441 | INFO     | job 6209148686 has completed (purged errors)
[2024-05-18 21:41:35] 2024-05-19 04:41:19,441 | INFO     | overall cleanup function is called
[2024-05-18 21:41:35] 2024-05-19 04:41:20,448 | INFO     | --- collectZombieJob: --- 10, [276495]
[2024-05-18 21:41:35] 2024-05-19 04:41:20,449 | INFO     | zombie collector waiting for pid 276495
[2024-05-18 21:41:35] 2024-05-19 04:41:20,449 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-18 21:41:35] 2024-05-19 04:41:21,452 | INFO     | collected zombie processes
[2024-05-18 21:41:35] 2024-05-19 04:41:21,452 | INFO     | will now attempt to kill all subprocesses of pid=276495
[2024-05-18 21:41:35] 2024-05-19 04:41:21,613 | INFO     | process IDs to be killed: [276495] (in reverse order)
[2024-05-18 21:41:35] 2024-05-19 04:41:21,694 | WARNING  | found no corresponding commands to process id(s)
[2024-05-18 21:41:35] 2024-05-19 04:41:21,694 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-18 21:41:35] 2024-05-19 04:41:21,700 | INFO     | did not find any defunct processes belonging to 276495
[2024-05-18 21:41:35] 2024-05-19 04:41:21,705 | INFO     | did not find any defunct processes belonging to 276495
[2024-05-18 21:41:35] 2024-05-19 04:41:21,705 | INFO     | ready for new job
[2024-05-18 21:41:35] 2024-05-19 04:41:21,705 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-18 21:41:35] 2024-05-19 04:41:21,706 | INFO     | *************************************
[2024-05-18 21:41:35] 2024-05-19 04:41:21,707 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-18 21:41:35] 2024-05-19 04:41:21,707 | INFO     | *************************************
[2024-05-18 21:41:35] 2024-05-19 04:41:21,707 | INFO     | 
[2024-05-18 21:41:35] 2024-05-19 04:41:21,709 | INFO     | architecture information:
[2024-05-18 21:41:35] 2024-05-19 04:41:21,709 | INFO     | executing command: cat /etc/os-release
[2024-05-18 21:41:35] 2024-05-19 04:41:21,725 | INFO     | cat /etc/os-release:
[2024-05-18 21:41:35] NAME="CentOS Linux"
[2024-05-18 21:41:35] VERSION="7 (Core)"
[2024-05-18 21:41:35] ID="centos"
[2024-05-18 21:41:35] ID_LIKE="rhel fedora"
[2024-05-18 21:41:35] VERSION_ID="7"
[2024-05-18 21:41:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-18 21:41:35] ANSI_COLOR="0;31"
[2024-05-18 21:41:35] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-18 21:41:35] HOME_URL="https://www.centos.org/"
[2024-05-18 21:41:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-18 21:41:35] 
[2024-05-18 21:41:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-18 21:41:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-18 21:41:35] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-18 21:41:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-18 21:41:35] 
[2024-05-18 21:41:35] 2024-05-19 04:41:21,725 | INFO     | *************************************
[2024-05-18 21:41:35] 2024-05-19 04:41:22,228 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-18 21:41:35] 2024-05-19 04:41:22,249 | INFO     | sufficient remaining disk space (1812526530560 B)
[2024-05-18 21:41:35] 2024-05-19 04:41:22,249 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-18 21:41:35] 2024-05-19 04:41:22,249 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-18 21:41:35] 2024-05-19 04:41:22,249 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-18 21:41:35] 2024-05-19 04:41:22,250 | INFO     | found 0 job(s) in 20 queues
[2024-05-18 21:41:35] 2024-05-19 04:41:22,250 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-18 21:41:35] 2024-05-19 04:41:22,250 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-18 21:41:35] 2024-05-19 04:41:22,302 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2024-05-18 21:41:35] 2024-05-19 04:41:22,303 | WARNING  | cannot recover job monitoring - aborting pilot
[2024-05-18 21:41:35] 2024-05-19 04:41:22,303 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-18 21:41:35] 2024-05-19 04:41:22,303 | INFO     | will abort loop
[2024-05-18 21:41:35] 2024-05-19 04:41:22,367 | INFO     | all job control threads have been joined
[2024-05-18 21:41:35] 2024-05-19 04:41:22,567 | INFO     | all payload control threads have been joined
[2024-05-18 21:41:35] 2024-05-19 04:41:22,593 | INFO     | all data control threads have been joined
[2024-05-18 21:41:35] 2024-05-19 04:41:22,788 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-18 21:41:35] 2024-05-19 04:41:23,254 | INFO     | [job] retrieve thread has finished
[2024-05-18 21:41:35] 2024-05-19 04:41:23,308 | INFO     | [job] job monitor thread has finished
[2024-05-18 21:41:35] 2024-05-19 04:41:23,321 | INFO     | [payload] failed_post thread has finished
[2024-05-18 21:41:35] 2024-05-19 04:41:23,372 | INFO     | [job] control thread has finished
[2024-05-18 21:41:35] 2024-05-19 04:41:23,573 | INFO     | [payload] control thread has finished
[2024-05-18 21:41:35] 2024-05-19 04:41:23,599 | INFO     | [data] control thread has finished
[2024-05-18 21:41:35] 2024-05-19 04:41:23,647 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-18 21:41:35] 2024-05-19 04:41:23,737 | INFO     | [payload] validate_post thread has finished
[2024-05-18 21:41:35] 2024-05-19 04:41:24,019 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-18 21:41:35] 2024-05-19 04:41:24,094 | INFO     | [data] copytool_in thread has finished
[2024-05-18 21:41:35] 2024-05-19 04:41:24,095 | INFO     | [job] validate thread has finished
[2024-05-18 21:41:35] 2024-05-19 04:41:24,262 | INFO     | [job] create_data_payload thread has finished
[2024-05-18 21:41:35] 2024-05-19 04:41:24,277 | INFO     | [payload] validate_pre thread has finished
[2024-05-18 21:41:35] 2024-05-19 04:41:24,296 | INFO     | [payload] execute_payloads thread has finished
[2024-05-18 21:41:35] 2024-05-19 04:41:24,792 | INFO     | [data] copytool_out thread has finished
[2024-05-18 21:41:35] 2024-05-19 04:41:24,939 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-18 21:41:35] 2024-05-19 04:41:25,024 | INFO     | [job] queue monitor thread has finished
[2024-05-18 21:41:35] 2024-05-19 04:41:28,944 | INFO     | [data] queue_monitor thread has finished
[2024-05-18 21:41:35] 2024-05-19 04:41:29,257 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139675259897664)>', '<ExcThread(monitor, started 139674551056128)>']
[2024-05-18 21:41:35] 2024-05-19 04:41:29,278 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-18 21:41:35] 2024-05-19 04:41:29,278 | INFO     | [monitor] control thread has ended
[2024-05-18 21:41:35] 2024-05-19 04:41:34,282 | INFO     | all workflow threads have been joined
[2024-05-18 21:41:35] 2024-05-19 04:41:34,282 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-18 21:41:35] 2024-05-19 04:41:34,282 | INFO     | traces error code: 0
[2024-05-18 21:41:35] 2024-05-19 04:41:34,282 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-18 21:41:35] 2024-05-19 04:41:34,352 [wrapper] ==== pilot stdout END ====
[2024-05-18 21:41:35] 2024-05-19 04:41:34,355 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-18 21:41:35] 2024-05-19 04:41:34,359 [wrapper] pilotpid: 263552
[2024-05-18 21:41:35] 2024-05-19 04:41:34,362 [wrapper] Pilot exit status: 0
[2024-05-18 21:41:35] 2024-05-19 04:41:34,372 [wrapper] pandaids: 6209148686
[2024-05-18 21:41:35] 2024-05-19 04:41:34,426 [wrapper] cleanup: SIGTERM to supervisor_pilot 205549 263553
[2024-05-18 21:41:35] 2024-05-19 04:41:34,428 [wrapper] Test setup, not cleaning
[2024-05-18 21:41:35] 2024-05-19 04:41:34,430 [wrapper] ==== wrapper stdout END ====
[2024-05-18 21:41:35] 2024-05-19 04:41:34,432 [wrapper] ==== wrapper stderr END ====
[2024-05-18 21:41:35] 2024-05-19 04:41:34,435 [wrapper] apfmon messages muted
[2024-05-18 21:41:35]  *** Error codes and diagnostics ***
[2024-05-18 21:41:35]     "exeErrorCode": 0,
[2024-05-18 21:41:35]     "exeErrorDiag": "",
[2024-05-18 21:41:35]     "pilotErrorCode": 0,
[2024-05-18 21:41:35]     "pilotErrorDiag": "",
[2024-05-18 21:41:35]  *** Listing of results directory ***
[2024-05-18 21:41:35] total 828936
[2024-05-18 21:41:35] -rw-r--r-- 1 boinc boinc    467845 May 18 10:24 pilot3.tar.gz
[2024-05-18 21:41:35] -rw-r--r-- 1 boinc boinc      5633 May 18 10:24 queuedata.json
[2024-05-18 21:41:35] -rwx------ 1 boinc boinc     32251 May 18 10:24 runpilot2-wrapper.sh
[2024-05-18 21:41:35] -rw-r--r-- 1 boinc boinc       100 May 18 20:23 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-18 21:41:35] -rwxr-xr-x 1 boinc boinc      7986 May 18 20:23 run_atlas
[2024-05-18 21:41:35] -rw-r--r-- 1 boinc boinc       105 May 18 20:23 job.xml
[2024-05-18 21:41:35] -rw-r--r-- 2 boinc boinc 599597840 May 18 20:23 EVNT.38776119._000502.pool.root.1
[2024-05-18 21:41:35] -rw-r--r-- 1 boinc boinc      6626 May 18 20:23 init_data.xml
[2024-05-18 21:41:35] drwxrwx--x 2 boinc boinc      4096 May 18 20:23 shared
[2024-05-18 21:41:35] -rw-r--r-- 2 boinc boinc    480006 May 18 20:23 input.tar.gz
[2024-05-18 21:41:35] -rw-r--r-- 2 boinc boinc     17537 May 18 20:23 start_atlas.sh
[2024-05-18 21:41:35] -rw-r--r-- 1 boinc boinc         0 May 18 20:23 boinc_lockfile
[2024-05-18 21:41:35] -rw-r--r-- 1 boinc boinc      2635 May 18 20:23 pandaJob.out
[2024-05-18 21:41:35] -rw------- 1 boinc boinc       424 May 18 20:23 setup.sh.local
[2024-05-18 21:41:35] -rw------- 1 boinc boinc   1014003 May 18 20:23 agis_schedconf.cvmfs.json
[2024-05-18 21:41:35] -rw------- 1 boinc boinc         0 May 18 20:23 agis_ddmendpoints.agis.ALL.json
[2024-05-18 21:41:35] -rw------- 1 boinc boinc   1324701 May 18 20:23 cric_ddmendpoints.json
[2024-05-18 21:41:35] drwx------ 4 boinc boinc      4096 May 18 20:23 pilot3
[2024-05-18 21:41:35] -rw------- 1 boinc boinc 244103976 May 18 21:40 HITS.38776125._017450.pool.root.1
[2024-05-18 21:41:35] -rw-r--r-- 1 boinc boinc       530 May 18 21:40 boinc_task_state.xml
[2024-05-18 21:41:35] -rw------- 1 boinc boinc      1067 May 18 21:41 memory_monitor_summary.json
[2024-05-18 21:41:35] -rw------- 1 boinc boinc    352340 May 18 21:41 log.38776125._017450.job.log.tgz.1
[2024-05-18 21:41:35] -rw------- 1 boinc boinc        95 May 18 21:41 pilot_heartbeat.json
[2024-05-18 21:41:35] -rw------- 1 boinc boinc      7785 May 18 21:41 heartbeat.json
[2024-05-18 21:41:35] -rw-r--r-- 1 boinc boinc      8192 May 18 21:41 boinc_mmap_file
[2024-05-18 21:41:35] -rw-r--r-- 1 boinc boinc        27 May 18 21:41 wrapper_checkpoint.txt
[2024-05-18 21:41:35] -rw------- 1 boinc boinc      4519 May 18 21:41 pilotlog.txt
[2024-05-18 21:41:35] -rw------- 1 boinc boinc    445257 May 18 21:41 log.38776125._017450.job.log.1
[2024-05-18 21:41:35] -rw------- 1 boinc boinc       357 May 18 21:41 output.list
[2024-05-18 21:41:35] -rw-r--r-- 1 boinc boinc       620 May 18 21:41 runtime_log
[2024-05-18 21:41:35] -rw------- 1 boinc boinc    819200 May 18 21:41 result.tar.gz
[2024-05-18 21:41:35] -rw-r--r-- 1 boinc boinc     11286 May 18 21:41 runtime_log.err
[2024-05-18 21:41:35] -rw------- 1 boinc boinc       655 May 18 21:41 GZ3KDmsycS5nsSi4apGgGQJmABFKDmABFKDm4ySLDmzuSKDm6Dvn7n.diag
[2024-05-18 21:41:35] -rw-r--r-- 1 boinc boinc     21845 May 18 21:41 stderr.txt
[2024-05-18 21:41:35] HITS file was successfully produced:
[2024-05-18 21:41:35] -rw------- 1 boinc boinc 244103976 May 18 21:40 shared/HITS.pool.root.1
[2024-05-18 21:41:35]  *** Contents of shared directory: ***
[2024-05-18 21:41:35] total 825232
[2024-05-18 21:41:35] -rw-r--r-- 2 boinc boinc 599597840 May 18 20:23 ATLAS.root_0
[2024-05-18 21:41:35] -rw-r--r-- 2 boinc boinc    480006 May 18 20:23 input.tar.gz
[2024-05-18 21:41:35] -rw-r--r-- 2 boinc boinc     17537 May 18 20:23 start_atlas.sh
[2024-05-18 21:41:35] -rw------- 1 boinc boinc 244103976 May 18 21:40 HITS.pool.root.1
[2024-05-18 21:41:35] -rw------- 1 boinc boinc    819200 May 18 21:41 result.tar.gz
21:41:36 (257332): run_atlas exited; CPU time 31796.804631
21:41:36 (257332): called boinc_finish(0)

</stderr_txt>
]]>

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