Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
14:23:36 (109958): wrapper (7.7.26015): starting
14:23:36 (109958): wrapper: running run_atlas (--nthreads 12)
[2024-05-18 14:23:36] Arguments: --nthreads 12
[2024-05-18 14:23:36] Threads: 12
[2024-05-18 14:23:36] Checking for CVMFS
[2024-05-18 14:23:37] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-18 14:23:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-18 14:23:37] Running cvmfs_config stat atlas.cern.ch
[2024-05-18 14:23:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-18 14:23:37] 2.10.1.0 136323 185450 158580 132891 2 108 44649874 45568001 12975 130560 0 1161984961 99.778 678623688 17174 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2024-05-18 14:23:37] CVMFS is ok
[2024-05-18 14:23:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-18 14:23:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-18 14:23:37] Further information can be found at the LHC@home message board.
[2024-05-18 14:23:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-18 14:23:37] Checking for apptainer binary...
[2024-05-18 14:23:37] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-18 14:23:37] Running /usr/bin/apptainer --version
[2024-05-18 14:23:37] apptainer version 1.1.8-1.el7
[2024-05-18 14:23:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-18 14:23:38] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0044.triumf.lcg
[2024-05-18 14:23:38] apptainer works
[2024-05-18 14:23:38] Set ATHENA_PROC_NUMBER=12
[2024-05-18 14:23:38] Set ATHENA_CORE_NUMBER=12
[2024-05-18 14:23:38] Starting ATLAS job with PandaID=6209080488
[2024-05-18 14:23:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-18 15:39:04]  *** The last 200 lines of the pilot log: ***
[2024-05-18 15:39:04]  ddmendpoint=NDGF-T1_DATADISK
[2024-05-18 15:39:04]  direct_access_lan=False
[2024-05-18 15:39:04]  direct_access_wan=False
[2024-05-18 15:39:04]  domain=
[2024-05-18 15:39:04]  filesize=367048
[2024-05-18 15:39:04]  filetype=log
[2024-05-18 15:39:04]  guid=d9fa5f82-40c6-4a2c-817f-9dc608958b50
[2024-05-18 15:39:04]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-18 15:39:04]  is_tar=False
[2024-05-18 15:39:04]  lfn=log.38776146._016618.job.log.tgz.1
[2024-05-18 15:39:04]  mtime=0
[2024-05-18 15:39:04]  protocol_id=None
[2024-05-18 15:39:04]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-18 15:39:04]  replicas=None
[2024-05-18 15:39:04]  scope=mc23_13p6TeV
[2024-05-18 15:39:04]  status=None
[2024-05-18 15:39:04]  status_code=0
[2024-05-18 15:39:04]  storage_token=
[2024-05-18 15:39:04]  surl=/home/boinc/slots/0/PanDA_Pilot-6209080488/log.38776146._016618.job.log.tgz.1
[2024-05-18 15:39:04]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f1/37/log.38776146._016618.job.log.tgz.1
[2024-05-18 15:39:04]  workdir=None
[2024-05-18 15:39:04] ]
[2024-05-18 15:39:04] 2024-05-18 22:38:38,456 | INFO     | transferring file log.38776146._016618.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6209080488/log.38776146._016618.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-05-18 15:39:04] 2024-05-18 22:38:38,456 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6209080488/log.38776146._016618.job.log.tgz.1 /home/boinc/slots/0/log.38776146._016618.job.log.t
[2024-05-18 15:39:04] 2024-05-18 22:38:38,482 | INFO     | adding to output.list: log.38776146._016618.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f1/37/log.38776146._016618.job.log.tg
[2024-05-18 15:39:04] 2024-05-18 22:38:38,483 | INFO     | summary of transferred files:
[2024-05-18 15:39:04] 2024-05-18 22:38:38,483 | INFO     |  -- lfn=log.38776146._016618.job.log.tgz.1, status_code=0, status=transferred
[2024-05-18 15:39:04] 2024-05-18 22:38:38,483 | INFO     | stage-out finished correctly
[2024-05-18 15:39:04] 2024-05-18 22:38:38,819 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-18 15:39:04] 2024-05-18 22:38:39,920 | INFO     | job 6209080488 has state=finished
[2024-05-18 15:39:04] 2024-05-18 22:38:39,921 | INFO     | preparing for final server update for job 6209080488 in state='finished'
[2024-05-18 15:39:04] 2024-05-18 22:38:39,921 | INFO     | this job has now completed (state=finished)
[2024-05-18 15:39:04] 2024-05-18 22:38:39,921 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-18 15:39:04] 2024-05-18 22:38:39,921 | INFO     | job 6209080488 has finished - writing final server update
[2024-05-18 15:39:04] 2024-05-18 22:38:39,921 | INFO     | total number of processed events: 400 (read)
[2024-05-18 15:39:04] 2024-05-18 22:38:39,925 | INFO     | executing command: lscpu
[2024-05-18 15:39:04] 2024-05-18 22:38:39,986 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-18 15:39:04] 2024-05-18 22:38:39,986 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-18 15:39:04] 2024-05-18 22:38:40,037 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-18 15:39:04] 2024-05-18 22:38:40,614 | INFO     | monitor loop #346: job 0:6209080488 is in state 'finished'
[2024-05-18 15:39:04] 2024-05-18 22:38:40,614 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 15:39:04] 2024-05-18 22:38:42,920 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-18 15:39:04] 2024-05-18 22:38:42,920 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6209080488/memory_monitor_summary.json (trf name=prmon)
[2024-05-18 15:39:04] 2024-05-18 22:38:42,920 | INFO     | extracted standard info from prmon json
[2024-05-18 15:39:04] 2024-05-18 22:38:42,921 | INFO     | extracted standard memory fields from prmon json
[2024-05-18 15:39:04] 2024-05-18 22:38:42,921 | WARNING  | GPU info not found in prmon json
[2024-05-18 15:39:04] 2024-05-18 22:38:42,921 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-18 15:39:04] 2024-05-18 22:38:42,921 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-18 15:39:04] 2024-05-18 22:38:42,922 | INFO     | fitting pss+swap vs Time
[2024-05-18 15:39:04] 2024-05-18 22:38:42,922 | INFO     | model: linear, x: [1716067761.0, 1716067822.0, 1716067883.0, 1716067944.0, 1716068005.0, 1716068066.0, 1716068127.0, 1716068188.0, 1716068249.0, 1716068310.0, 1716
[2024-05-18 15:39:04] 2024-05-18 22:38:42,922 | INFO     | sum of square deviations: 93240818.0
[2024-05-18 15:39:04] 2024-05-18 22:38:42,922 | INFO     | sum of deviations: 17733535944.000004
[2024-05-18 15:39:04] 2024-05-18 22:38:42,922 | INFO     | mean x: 1716069774.0
[2024-05-18 15:39:04] 2024-05-18 22:38:42,922 | INFO     | mean y: 2708667.970149254
[2024-05-18 15:39:04] 2024-05-18 22:38:42,922 | INFO     | -- intersect: -326377793695.7153
[2024-05-18 15:39:04] 2024-05-18 22:38:42,923 | INFO     | intersect: -326377793695.7153
[2024-05-18 15:39:04] 2024-05-18 22:38:42,923 | INFO     | chi2: 2.5271643542015805
[2024-05-18 15:39:04] 2024-05-18 22:38:42,923 | INFO     | -- intersect: -326377793695.7153
[2024-05-18 15:39:04] 2024-05-18 22:38:42,923 | INFO     | current memory leak: 190.19 B/s (using 67 data points, chi2=2.53)
[2024-05-18 15:39:04] 2024-05-18 22:38:42,923 | INFO     | ..............................
[2024-05-18 15:39:04] 2024-05-18 22:38:42,923 | INFO     | . Timing measurements:
[2024-05-18 15:39:04] 2024-05-18 22:38:42,923 | INFO     | . get job = 0 s
[2024-05-18 15:39:04] 2024-05-18 22:38:42,923 | INFO     | . initial setup = 2 s
[2024-05-18 15:39:04] 2024-05-18 22:38:42,923 | INFO     | . payload setup = 6 s
[2024-05-18 15:39:04] 2024-05-18 22:38:42,923 | INFO     | . stage-in = 0 s
[2024-05-18 15:39:04] 2024-05-18 22:38:42,923 | INFO     | . payload execution = 4463 s
[2024-05-18 15:39:04] 2024-05-18 22:38:42,923 | INFO     | . stage-out = 0 s
[2024-05-18 15:39:04] 2024-05-18 22:38:42,923 | INFO     | . log creation = 0 s
[2024-05-18 15:39:04] 2024-05-18 22:38:42,923 | INFO     | ..............................
[2024-05-18 15:39:04] 2024-05-18 22:38:43,282 | INFO     | 
[2024-05-18 15:39:04] 2024-05-18 22:38:43,282 | INFO     | job summary report
[2024-05-18 15:39:04] 2024-05-18 22:38:43,282 | INFO     | --------------------------------------------------
[2024-05-18 15:39:04] 2024-05-18 22:38:43,283 | INFO     | PanDA job id: 6209080488
[2024-05-18 15:39:04] 2024-05-18 22:38:43,283 | INFO     | task id: 38776146
[2024-05-18 15:39:04] 2024-05-18 22:38:43,283 | INFO     | errors: (none)
[2024-05-18 15:39:04] 2024-05-18 22:38:43,283 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-18 15:39:04] 2024-05-18 22:38:43,283 | INFO     | pilot state: finished 
[2024-05-18 15:39:04] 2024-05-18 22:38:43,283 | INFO     | transexitcode: 0
[2024-05-18 15:39:04] 2024-05-18 22:38:43,283 | INFO     | exeerrorcode: 0
[2024-05-18 15:39:04] 2024-05-18 22:38:43,283 | INFO     | exeerrordiag: 
[2024-05-18 15:39:04] 2024-05-18 22:38:43,283 | INFO     | exitcode: 0
[2024-05-18 15:39:04] 2024-05-18 22:38:43,283 | INFO     | exitmsg: OK
[2024-05-18 15:39:04] 2024-05-18 22:38:43,283 | INFO     | cpuconsumptiontime: 41341 s
[2024-05-18 15:39:04] 2024-05-18 22:38:43,283 | INFO     | nevents: 400
[2024-05-18 15:39:04] 2024-05-18 22:38:43,283 | INFO     | neventsw: 0
[2024-05-18 15:39:04] 2024-05-18 22:38:43,284 | INFO     | pid: 122721
[2024-05-18 15:39:04] 2024-05-18 22:38:43,284 | INFO     | pgrp: 122721
[2024-05-18 15:39:04] 2024-05-18 22:38:43,284 | INFO     | corecount: 12
[2024-05-18 15:39:04] 2024-05-18 22:38:43,284 | INFO     | event service: False
[2024-05-18 15:39:04] 2024-05-18 22:38:43,284 | INFO     | sizes: {0: 2390717, 1: 2392250, 6: 2392456, 12: 2392484, 4473: 2418554, 4474: 2427692, 4478: 2427806}
[2024-05-18 15:39:04] 2024-05-18 22:38:43,284 | INFO     | --------------------------------------------------
[2024-05-18 15:39:04] 2024-05-18 22:38:43,284 | INFO     | 
[2024-05-18 15:39:04] 2024-05-18 22:38:43,284 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-18 15:39:04] 2024-05-18 22:38:43,299 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-18 15:39:04] 2024-05-18 22:38:43,299 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-18 15:39:04] 2024-05-18 22:38:43,299 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-18 15:39:04] 2024-05-18 22:38:43,299 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-18 15:39:04] 2024-05-18 22:38:43,300 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-18 15:39:04] 2024-05-18 22:38:43,300 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-18 15:39:04] 2024-05-18 22:38:43,300 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-18 15:39:04] 2024-05-18 22:38:43,300 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-18 15:39:04] 2024-05-18 22:38:43,300 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-18 15:39:04] 2024-05-18 22:38:43,300 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-18 15:39:04] 2024-05-18 22:38:43,300 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-18 15:39:04] 2024-05-18 22:38:43,300 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-18 15:39:04] 2024-05-18 22:38:43,300 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-18 15:39:04] 2024-05-18 22:38:43,300 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-18 15:39:04] 2024-05-18 22:38:43,300 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-18 15:39:04] 2024-05-18 22:38:43,300 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-18 15:39:04] 2024-05-18 22:38:43,301 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-18 15:39:04] 2024-05-18 22:38:43,301 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-18 15:39:04] 2024-05-18 22:38:43,301 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-18 15:39:04] 2024-05-18 22:38:43,301 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-18 15:39:04] 2024-05-18 22:38:43,301 | INFO     | job 6209080488 has completed (purged errors)
[2024-05-18 15:39:04] 2024-05-18 22:38:43,301 | INFO     | overall cleanup function is called
[2024-05-18 15:39:04] 2024-05-18 22:38:44,307 | INFO     | --- collectZombieJob: --- 10, [122721]
[2024-05-18 15:39:04] 2024-05-18 22:38:44,307 | INFO     | zombie collector waiting for pid 122721
[2024-05-18 15:39:04] 2024-05-18 22:38:44,307 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-18 15:39:04] 2024-05-18 22:38:45,312 | INFO     | collected zombie processes
[2024-05-18 15:39:04] 2024-05-18 22:38:45,313 | INFO     | will now attempt to kill all subprocesses of pid=122721
[2024-05-18 15:39:04] 2024-05-18 22:38:45,443 | INFO     | process IDs to be killed: [122721] (in reverse order)
[2024-05-18 15:39:04] 2024-05-18 22:38:45,552 | WARNING  | found no corresponding commands to process id(s)
[2024-05-18 15:39:04] 2024-05-18 22:38:45,552 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-18 15:39:04] 2024-05-18 22:38:45,559 | INFO     | did not find any defunct processes belonging to 122721
[2024-05-18 15:39:04] 2024-05-18 22:38:45,564 | INFO     | did not find any defunct processes belonging to 122721
[2024-05-18 15:39:04] 2024-05-18 22:38:45,565 | INFO     | ready for new job
[2024-05-18 15:39:04] 2024-05-18 22:38:45,565 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-18 15:39:04] 2024-05-18 22:38:45,566 | INFO     | *************************************
[2024-05-18 15:39:04] 2024-05-18 22:38:45,566 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-18 15:39:04] 2024-05-18 22:38:45,566 | INFO     | *************************************
[2024-05-18 15:39:04] 2024-05-18 22:38:45,566 | INFO     | 
[2024-05-18 15:39:04] 2024-05-18 22:38:45,568 | INFO     | architecture information:
[2024-05-18 15:39:04] 2024-05-18 22:38:45,568 | INFO     | executing command: cat /etc/os-release
[2024-05-18 15:39:04] 2024-05-18 22:38:45,585 | INFO     | cat /etc/os-release:
[2024-05-18 15:39:04] NAME="CentOS Linux"
[2024-05-18 15:39:04] VERSION="7 (Core)"
[2024-05-18 15:39:04] ID="centos"
[2024-05-18 15:39:04] ID_LIKE="rhel fedora"
[2024-05-18 15:39:04] VERSION_ID="7"
[2024-05-18 15:39:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-18 15:39:04] ANSI_COLOR="0;31"
[2024-05-18 15:39:04] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-18 15:39:04] HOME_URL="https://www.centos.org/"
[2024-05-18 15:39:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-18 15:39:04] 
[2024-05-18 15:39:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-18 15:39:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-18 15:39:04] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-18 15:39:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-18 15:39:04] 
[2024-05-18 15:39:04] 2024-05-18 22:38:45,585 | INFO     | *************************************
[2024-05-18 15:39:04] 2024-05-18 22:38:46,089 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-18 15:39:04] 2024-05-18 22:38:46,117 | INFO     | sufficient remaining disk space (2136253399040 B)
[2024-05-18 15:39:04] 2024-05-18 22:38:46,117 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-18 15:39:04] 2024-05-18 22:38:46,118 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-18 15:39:04] 2024-05-18 22:38:46,542 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-18 15:39:04] 2024-05-18 22:38:46,598 | INFO     | all payload control threads have been joined
[2024-05-18 15:39:04] 2024-05-18 22:38:46,625 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-18 15:39:04] 2024-05-18 22:38:46,625 | INFO     | aborting loop
[2024-05-18 15:39:04] 2024-05-18 22:38:46,705 | INFO     | all job control threads have been joined
[2024-05-18 15:39:04] 2024-05-18 22:38:47,019 | INFO     | found 0 job(s) in 20 queues
[2024-05-18 15:39:04] 2024-05-18 22:38:47,019 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-18 15:39:04] 2024-05-18 22:38:47,019 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-18 15:39:04] 2024-05-18 22:38:47,111 | INFO     | all data control threads have been joined
[2024-05-18 15:39:04] 2024-05-18 22:38:47,123 | INFO     | [job] retrieve thread has finished
[2024-05-18 15:39:04] 2024-05-18 22:38:47,406 | INFO     | [payload] failed_post thread has finished
[2024-05-18 15:39:04] 2024-05-18 22:38:47,569 | INFO     | [payload] execute_payloads thread has finished
[2024-05-18 15:39:04] 2024-05-18 22:38:47,603 | INFO     | [payload] control thread has finished
[2024-05-18 15:39:04] 2024-05-18 22:38:47,630 | INFO     | [job] job monitor thread has finished
[2024-05-18 15:39:04] 2024-05-18 22:38:47,710 | INFO     | [job] control thread has finished
[2024-05-18 15:39:04] 2024-05-18 22:38:47,984 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-18 15:39:04] 2024-05-18 22:38:48,062 | INFO     | [job] validate thread has finished
[2024-05-18 15:39:04] 2024-05-18 22:38:48,076 | INFO     | [job] create_data_payload thread has finished
[2024-05-18 15:39:04] 2024-05-18 22:38:48,084 | INFO     | [payload] validate_pre thread has finished
[2024-05-18 15:39:04] 2024-05-18 22:38:48,117 | INFO     | [data] control thread has finished
[2024-05-18 15:39:04] 2024-05-18 22:38:48,267 | INFO     | [payload] validate_post thread has finished
[2024-05-18 15:39:04] 2024-05-18 22:38:48,547 | INFO     | [data] copytool_out thread has finished
[2024-05-18 15:39:04] 2024-05-18 22:38:48,604 | INFO     | [data] copytool_in thread has finished
[2024-05-18 15:39:04] 2024-05-18 22:38:48,989 | INFO     | [job] queue monitor thread has finished
[2024-05-18 15:39:04] 2024-05-18 22:38:49,407 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-18 15:39:04] 2024-05-18 22:38:53,412 | INFO     | [data] queue_monitor thread has finished
[2024-05-18 15:39:04] 2024-05-18 22:38:57,061 | INFO     | job.realtimelogging is not enabled
[2024-05-18 15:39:04] 2024-05-18 22:38:58,063 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-18 15:39:04] 2024-05-18 22:38:58,066 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139902201681728)>', '<ExcThread(monitor, started 139901997352704)>']
[2024-05-18 15:39:04] 2024-05-18 22:38:58,072 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-18 15:39:04] 2024-05-18 22:38:58,072 | INFO     | [monitor] control thread has ended
[2024-05-18 15:39:04] 2024-05-18 22:39:03,091 | INFO     | all workflow threads have been joined
[2024-05-18 15:39:04] 2024-05-18 22:39:03,091 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-18 15:39:04] 2024-05-18 22:39:03,091 | INFO     | traces error code: 0
[2024-05-18 15:39:04] 2024-05-18 22:39:03,092 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-18 15:39:04] 2024-05-18 22:39:03,153 [wrapper] ==== pilot stdout END ====
[2024-05-18 15:39:04] 2024-05-18 22:39:03,158 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-18 15:39:04] 2024-05-18 22:39:03,161 [wrapper] pilotpid: 116186
[2024-05-18 15:39:04] 2024-05-18 22:39:03,163 [wrapper] Pilot exit status: 0
[2024-05-18 15:39:04] 2024-05-18 22:39:03,170 [wrapper] pandaids: 6209080488
[2024-05-18 15:39:04] 2024-05-18 22:39:03,243 [wrapper] cleanup: SIGTERM to supervisor_pilot 185716 116187
[2024-05-18 15:39:04] 2024-05-18 22:39:03,247 [wrapper] Test setup, not cleaning
[2024-05-18 15:39:04] 2024-05-18 22:39:03,249 [wrapper] ==== wrapper stdout END ====
[2024-05-18 15:39:04] 2024-05-18 22:39:03,251 [wrapper] ==== wrapper stderr END ====
[2024-05-18 15:39:04] 2024-05-18 22:39:03,256 [wrapper] apfmon messages muted
[2024-05-18 15:39:04]  *** Error codes and diagnostics ***
[2024-05-18 15:39:04]     "exeErrorCode": 0,
[2024-05-18 15:39:04]     "exeErrorDiag": "",
[2024-05-18 15:39:04]     "pilotErrorCode": 0,
[2024-05-18 15:39:04]     "pilotErrorDiag": "",
[2024-05-18 15:39:04]  *** Listing of results directory ***
[2024-05-18 15:39:04] total 872264
[2024-05-18 15:39:04] -rw-r--r-- 1 boinc boinc    467845 May 18 08:04 pilot3.tar.gz
[2024-05-18 15:39:04] -rwx------ 1 boinc boinc     32251 May 18 08:14 runpilot2-wrapper.sh
[2024-05-18 15:39:04] -rw-r--r-- 1 boinc boinc      5633 May 18 08:14 queuedata.json
[2024-05-18 15:39:04] -rw-r--r-- 1 boinc boinc       100 May 18 14:23 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-18 15:39:04] -rwxr-xr-x 1 boinc boinc      7986 May 18 14:23 run_atlas
[2024-05-18 15:39:04] -rw-r--r-- 1 boinc boinc       105 May 18 14:23 job.xml
[2024-05-18 15:39:04] -rw-r--r-- 2 boinc boinc 612894594 May 18 14:23 EVNT.38776140._000338.pool.root.1
[2024-05-18 15:39:04] -rw-r--r-- 2 boinc boinc     17537 May 18 14:23 start_atlas.sh
[2024-05-18 15:39:04] drwxrwx--x 2 boinc boinc      4096 May 18 14:23 shared
[2024-05-18 15:39:04] -rw-r--r-- 2 boinc boinc    480011 May 18 14:23 input.tar.gz
[2024-05-18 15:39:04] -rw-r--r-- 1 boinc boinc      6627 May 18 14:23 init_data.xml
[2024-05-18 15:39:04] -rw-r--r-- 1 boinc boinc         0 May 18 14:23 boinc_lockfile
[2024-05-18 15:39:04] -rw-r--r-- 1 boinc boinc      2614 May 18 14:23 pandaJob.out
[2024-05-18 15:39:04] -rw------- 1 boinc boinc       424 May 18 14:23 setup.sh.local
[2024-05-18 15:39:04] -rw------- 1 boinc boinc   1013720 May 18 14:23 agis_schedconf.cvmfs.json
[2024-05-18 15:39:04] -rw------- 1 boinc boinc         0 May 18 14:23 agis_ddmendpoints.agis.ALL.json
[2024-05-18 15:39:04] -rw------- 1 boinc boinc   1324701 May 18 14:23 cric_ddmendpoints.json
[2024-05-18 15:39:04] drwx------ 4 boinc boinc      4096 May 18 14:23 pilot3
[2024-05-18 15:39:04] -rw------- 1 boinc boinc        95 May 18 15:38 pilot_heartbeat.json
[2024-05-18 15:39:04] -rw------- 1 boinc boinc 275156834 May 18 15:38 HITS.38776146._016618.pool.root.1
[2024-05-18 15:39:04] -rw-r--r-- 1 boinc boinc       530 May 18 15:38 boinc_task_state.xml
[2024-05-18 15:39:04] -rw------- 1 boinc boinc      1049 May 18 15:38 memory_monitor_summary.json
[2024-05-18 15:39:04] -rw------- 1 boinc boinc    367048 May 18 15:38 log.38776146._016618.job.log.tgz.1
[2024-05-18 15:39:04] -rw------- 1 boinc boinc      7760 May 18 15:38 heartbeat.json
[2024-05-18 15:39:04] -rw-r--r-- 1 boinc boinc      8192 May 18 15:38 boinc_mmap_file
[2024-05-18 15:39:04] -rw-r--r-- 1 boinc boinc        27 May 18 15:38 wrapper_checkpoint.txt
[2024-05-18 15:39:04] -rw------- 1 boinc boinc      4282 May 18 15:39 pilotlog.txt
[2024-05-18 15:39:04] -rw------- 1 boinc boinc    441296 May 18 15:39 log.38776146._016618.job.log.1
[2024-05-18 15:39:04] -rw------- 1 boinc boinc       357 May 18 15:39 output.list
[2024-05-18 15:39:04] -rw-r--r-- 1 boinc boinc       620 May 18 15:39 runtime_log
[2024-05-18 15:39:04] -rw------- 1 boinc boinc    829440 May 18 15:39 result.tar.gz
[2024-05-18 15:39:04] -rw-r--r-- 1 boinc boinc     11286 May 18 15:39 runtime_log.err
[2024-05-18 15:39:04] -rw------- 1 boinc boinc       653 May 18 15:39 CaiMDmEwaS5n7Olcko1bjSoqABFKDmABFKDmOtvXDm5GaKDmUYIF4m.diag
[2024-05-18 15:39:04] -rw-r--r-- 1 boinc boinc     21274 May 18 15:39 stderr.txt
[2024-05-18 15:39:04] HITS file was successfully produced:
[2024-05-18 15:39:04] -rw------- 1 boinc boinc 275156834 May 18 15:38 shared/HITS.pool.root.1
[2024-05-18 15:39:04]  *** Contents of shared directory: ***
[2024-05-18 15:39:04] total 868552
[2024-05-18 15:39:04] -rw-r--r-- 2 boinc boinc 612894594 May 18 14:23 ATLAS.root_0
[2024-05-18 15:39:04] -rw-r--r-- 2 boinc boinc     17537 May 18 14:23 start_atlas.sh
[2024-05-18 15:39:04] -rw-r--r-- 2 boinc boinc    480011 May 18 14:23 input.tar.gz
[2024-05-18 15:39:04] -rw------- 1 boinc boinc 275156834 May 18 15:38 HITS.pool.root.1
[2024-05-18 15:39:04] -rw------- 1 boinc boinc    829440 May 18 15:39 result.tar.gz
15:39:05 (109958): run_atlas exited; CPU time 41219.389203
15:39:05 (109958): called boinc_finish(0)

</stderr_txt>
]]>

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