Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
15:20:53 (136324): wrapper (7.7.26015): starting
15:20:53 (136324): wrapper: running run_atlas (--nthreads 12)
[2024-05-18 15:20:53] Arguments: --nthreads 12
[2024-05-18 15:20:53] Threads: 12
[2024-05-18 15:20:53] Checking for CVMFS
[2024-05-18 15:20:53] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-18 15:20:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-18 15:20:53] Running cvmfs_config stat atlas.cern.ch
[2024-05-18 15:20:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-18 15:20:54] 2.10.1.0 2816 174253 178800 132893 2 64 41268068 45568001 11100 130560 0 1089377103 99.764 678380911 18459 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2024-05-18 15:20:54] CVMFS is ok
[2024-05-18 15:20:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-18 15:20:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-18 15:20:54] Further information can be found at the LHC@home message board.
[2024-05-18 15:20:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-18 15:20:54] Checking for apptainer binary...
[2024-05-18 15:20:54] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-18 15:20:54] Running /usr/bin/apptainer --version
[2024-05-18 15:20:54] apptainer version 1.1.8-1.el7
[2024-05-18 15:20:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-18 15:20:55] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0074.triumf.lcg
[2024-05-18 15:20:55] apptainer works
[2024-05-18 15:20:55] Set ATHENA_PROC_NUMBER=12
[2024-05-18 15:20:55] Set ATHENA_CORE_NUMBER=12
[2024-05-18 15:20:55] Starting ATLAS job with PandaID=6209076252
[2024-05-18 15:20:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-18 16:39:42]  *** The last 200 lines of the pilot log: ***
[2024-05-18 16:39:42]  domain=
[2024-05-18 16:39:42]  filesize=363843
[2024-05-18 16:39:42]  filetype=log
[2024-05-18 16:39:42]  guid=f9171031-5b00-4a45-b3b3-97ff2d83546f
[2024-05-18 16:39:42]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-18 16:39:42]  is_tar=False
[2024-05-18 16:39:42]  lfn=log.38776146._016467.job.log.tgz.1
[2024-05-18 16:39:42]  mtime=0
[2024-05-18 16:39:42]  protocol_id=None
[2024-05-18 16:39:42]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-18 16:39:42]  replicas=None
[2024-05-18 16:39:42]  scope=mc23_13p6TeV
[2024-05-18 16:39:42]  status=None
[2024-05-18 16:39:42]  status_code=0
[2024-05-18 16:39:42]  storage_token=
[2024-05-18 16:39:42]  surl=/home/boinc/slots/0/PanDA_Pilot-6209076252/log.38776146._016467.job.log.tgz.1
[2024-05-18 16:39:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/03/b4/log.38776146._016467.job.log.tgz.1
[2024-05-18 16:39:42]  workdir=None
[2024-05-18 16:39:42] ]
[2024-05-18 16:39:42] 2024-05-18 23:39:15,031 | INFO     | transferring file log.38776146._016467.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6209076252/log.38776146._016467.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-05-18 16:39:42] 2024-05-18 23:39:15,031 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6209076252/log.38776146._016467.job.log.tgz.1 /home/boinc/slots/0/log.38776146._016467.job.log.t
[2024-05-18 16:39:42] 2024-05-18 23:39:15,054 | INFO     | adding to output.list: log.38776146._016467.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/03/b4/log.38776146._016467.job.log.tg
[2024-05-18 16:39:42] 2024-05-18 23:39:15,055 | INFO     | summary of transferred files:
[2024-05-18 16:39:42] 2024-05-18 23:39:15,055 | INFO     |  -- lfn=log.38776146._016467.job.log.tgz.1, status_code=0, status=transferred
[2024-05-18 16:39:42] 2024-05-18 23:39:15,055 | INFO     | stage-out finished correctly
[2024-05-18 16:39:42] 2024-05-18 23:39:16,030 | INFO     | monitor loop #359: job 0:6209076252 is in state 'finished'
[2024-05-18 16:39:42] 2024-05-18 23:39:16,030 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 16:39:42] 2024-05-18 23:39:17,266 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-18 16:39:42] 2024-05-18 23:39:17,315 | INFO     | job 6209076252 has state=finished
[2024-05-18 16:39:42] 2024-05-18 23:39:17,315 | INFO     | preparing for final server update for job 6209076252 in state='finished'
[2024-05-18 16:39:42] 2024-05-18 23:39:17,650 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2024-05-18 16:39:42] 2024-05-18 23:39:17,650 | INFO     | this job has now completed (state=finished)
[2024-05-18 16:39:42] 2024-05-18 23:39:17,650 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-18 16:39:42] 2024-05-18 23:39:17,651 | INFO     | job 6209076252 has finished - writing final server update
[2024-05-18 16:39:42] 2024-05-18 23:39:17,651 | INFO     | total number of processed events: 400 (read)
[2024-05-18 16:39:42] 2024-05-18 23:39:17,654 | INFO     | executing command: lscpu
[2024-05-18 16:39:42] 2024-05-18 23:39:17,709 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-18 16:39:42] 2024-05-18 23:39:17,710 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-18 16:39:42] 2024-05-18 23:39:17,754 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-18 16:39:42] 2024-05-18 23:39:18,533 | INFO     | monitor loop #360: job 0:6209076252 is in state 'finished'
[2024-05-18 16:39:42] 2024-05-18 23:39:18,533 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 16:39:42] 2024-05-18 23:39:20,799 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-18 16:39:42] 2024-05-18 23:39:20,800 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6209076252/memory_monitor_summary.json (trf name=prmon)
[2024-05-18 16:39:42] 2024-05-18 23:39:20,801 | INFO     | extracted standard info from prmon json
[2024-05-18 16:39:42] 2024-05-18 23:39:20,801 | INFO     | extracted standard memory fields from prmon json
[2024-05-18 16:39:42] 2024-05-18 23:39:20,801 | WARNING  | GPU info not found in prmon json
[2024-05-18 16:39:42] 2024-05-18 23:39:20,801 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-18 16:39:42] 2024-05-18 23:39:20,801 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-18 16:39:42] 2024-05-18 23:39:20,802 | INFO     | fitting pss+swap vs Time
[2024-05-18 16:39:42] 2024-05-18 23:39:20,802 | INFO     | model: linear, x: [1716071196.0, 1716071257.0, 1716071318.0, 1716071379.0, 1716071440.0, 1716071501.0, 1716071562.0, 1716071623.0, 1716071684.0, 1716071745.0, 1716
[2024-05-18 16:39:42] 2024-05-18 23:39:20,803 | INFO     | sum of square deviations: 106337305.4857144
[2024-05-18 16:39:42] 2024-05-18 23:39:20,803 | INFO     | sum of deviations: 19803377672.68571
[2024-05-18 16:39:42] 2024-05-18 23:39:20,803 | INFO     | mean x: 1716073300.5142858
[2024-05-18 16:39:42] 2024-05-18 23:39:20,803 | INFO     | mean y: 2740722.314285714
[2024-05-18 16:39:42] 2024-05-18 23:39:20,803 | INFO     | -- intersect: -319584515404.48474
[2024-05-18 16:39:42] 2024-05-18 23:39:20,803 | INFO     | intersect: -319584515404.48474
[2024-05-18 16:39:42] 2024-05-18 23:39:20,803 | INFO     | chi2: 2.5209204292399825
[2024-05-18 16:39:42] 2024-05-18 23:39:20,803 | INFO     | -- intersect: -319584515404.48474
[2024-05-18 16:39:42] 2024-05-18 23:39:20,803 | INFO     | current memory leak: 186.23 B/s (using 70 data points, chi2=2.52)
[2024-05-18 16:39:42] 2024-05-18 23:39:20,804 | INFO     | ..............................
[2024-05-18 16:39:42] 2024-05-18 23:39:20,804 | INFO     | . Timing measurements:
[2024-05-18 16:39:42] 2024-05-18 23:39:20,804 | INFO     | . get job = 0 s
[2024-05-18 16:39:42] 2024-05-18 23:39:20,804 | INFO     | . initial setup = 1 s
[2024-05-18 16:39:42] 2024-05-18 23:39:20,804 | INFO     | . payload setup = 5 s
[2024-05-18 16:39:42] 2024-05-18 23:39:20,804 | INFO     | . stage-in = 0 s
[2024-05-18 16:39:42] 2024-05-18 23:39:20,804 | INFO     | . payload execution = 4663 s
[2024-05-18 16:39:42] 2024-05-18 23:39:20,804 | INFO     | . stage-out = 1 s
[2024-05-18 16:39:42] 2024-05-18 23:39:20,804 | INFO     | . log creation = 0 s
[2024-05-18 16:39:42] 2024-05-18 23:39:20,804 | INFO     | ..............................
[2024-05-18 16:39:42] 2024-05-18 23:39:20,857 | INFO     | 
[2024-05-18 16:39:42] 2024-05-18 23:39:20,858 | INFO     | job summary report
[2024-05-18 16:39:42] 2024-05-18 23:39:20,858 | INFO     | --------------------------------------------------
[2024-05-18 16:39:42] 2024-05-18 23:39:20,858 | INFO     | PanDA job id: 6209076252
[2024-05-18 16:39:42] 2024-05-18 23:39:20,858 | INFO     | task id: 38776146
[2024-05-18 16:39:42] 2024-05-18 23:39:20,858 | INFO     | errors: (none)
[2024-05-18 16:39:42] 2024-05-18 23:39:20,858 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-18 16:39:42] 2024-05-18 23:39:20,858 | INFO     | pilot state: finished 
[2024-05-18 16:39:42] 2024-05-18 23:39:20,858 | INFO     | transexitcode: 0
[2024-05-18 16:39:42] 2024-05-18 23:39:20,858 | INFO     | exeerrorcode: 0
[2024-05-18 16:39:42] 2024-05-18 23:39:20,858 | INFO     | exeerrordiag: 
[2024-05-18 16:39:42] 2024-05-18 23:39:20,858 | INFO     | exitcode: 0
[2024-05-18 16:39:42] 2024-05-18 23:39:20,858 | INFO     | exitmsg: OK
[2024-05-18 16:39:42] 2024-05-18 23:39:20,858 | INFO     | cpuconsumptiontime: 42640 s
[2024-05-18 16:39:42] 2024-05-18 23:39:20,858 | INFO     | nevents: 400
[2024-05-18 16:39:42] 2024-05-18 23:39:20,858 | INFO     | neventsw: 0
[2024-05-18 16:39:42] 2024-05-18 23:39:20,858 | INFO     | pid: 147019
[2024-05-18 16:39:42] 2024-05-18 23:39:20,858 | INFO     | pgrp: 147019
[2024-05-18 16:39:42] 2024-05-18 23:39:20,858 | INFO     | corecount: 12
[2024-05-18 16:39:42] 2024-05-18 23:39:20,858 | INFO     | event service: False
[2024-05-18 16:39:42] 2024-05-18 23:39:20,858 | INFO     | sizes: {0: 2392051, 1: 2392250, 6: 2392456, 11: 2392484, 4672: 2418582, 4674: 2427536, 4677: 2427720, 4680: 2427890}
[2024-05-18 16:39:42] 2024-05-18 23:39:20,858 | INFO     | --------------------------------------------------
[2024-05-18 16:39:42] 2024-05-18 23:39:20,858 | INFO     | 
[2024-05-18 16:39:42] 2024-05-18 23:39:20,859 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-18 16:39:42] 2024-05-18 23:39:20,877 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-18 16:39:42] 2024-05-18 23:39:20,877 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-18 16:39:42] 2024-05-18 23:39:20,877 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-18 16:39:42] 2024-05-18 23:39:20,877 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-18 16:39:42] 2024-05-18 23:39:20,877 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-18 16:39:42] 2024-05-18 23:39:20,877 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-18 16:39:42] 2024-05-18 23:39:20,877 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-18 16:39:42] 2024-05-18 23:39:20,877 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-18 16:39:42] 2024-05-18 23:39:20,877 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-18 16:39:42] 2024-05-18 23:39:20,877 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-18 16:39:42] 2024-05-18 23:39:20,877 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-18 16:39:42] 2024-05-18 23:39:20,878 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-18 16:39:42] 2024-05-18 23:39:20,878 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-18 16:39:42] 2024-05-18 23:39:20,878 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-18 16:39:42] 2024-05-18 23:39:20,878 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-18 16:39:42] 2024-05-18 23:39:20,878 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-18 16:39:42] 2024-05-18 23:39:20,878 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-18 16:39:42] 2024-05-18 23:39:20,878 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-18 16:39:42] 2024-05-18 23:39:20,878 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-18 16:39:42] 2024-05-18 23:39:20,878 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-18 16:39:42] 2024-05-18 23:39:20,878 | INFO     | job 6209076252 has completed (purged errors)
[2024-05-18 16:39:42] 2024-05-18 23:39:20,878 | INFO     | overall cleanup function is called
[2024-05-18 16:39:42] 2024-05-18 23:39:21,886 | INFO     | --- collectZombieJob: --- 10, [147019]
[2024-05-18 16:39:42] 2024-05-18 23:39:21,886 | INFO     | zombie collector waiting for pid 147019
[2024-05-18 16:39:42] 2024-05-18 23:39:21,886 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-18 16:39:42] 2024-05-18 23:39:22,890 | INFO     | collected zombie processes
[2024-05-18 16:39:42] 2024-05-18 23:39:22,891 | INFO     | will now attempt to kill all subprocesses of pid=147019
[2024-05-18 16:39:42] 2024-05-18 23:39:23,048 | INFO     | process IDs to be killed: [147019] (in reverse order)
[2024-05-18 16:39:42] 2024-05-18 23:39:23,131 | WARNING  | found no corresponding commands to process id(s)
[2024-05-18 16:39:42] 2024-05-18 23:39:23,131 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-18 16:39:42] 2024-05-18 23:39:23,137 | INFO     | did not find any defunct processes belonging to 147019
[2024-05-18 16:39:42] 2024-05-18 23:39:23,141 | INFO     | did not find any defunct processes belonging to 147019
[2024-05-18 16:39:42] 2024-05-18 23:39:23,142 | INFO     | ready for new job
[2024-05-18 16:39:42] 2024-05-18 23:39:23,142 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-18 16:39:42] 2024-05-18 23:39:23,143 | INFO     | *************************************
[2024-05-18 16:39:42] 2024-05-18 23:39:23,143 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-18 16:39:42] 2024-05-18 23:39:23,143 | INFO     | *************************************
[2024-05-18 16:39:42] 2024-05-18 23:39:23,143 | INFO     | 
[2024-05-18 16:39:42] 2024-05-18 23:39:23,145 | INFO     | architecture information:
[2024-05-18 16:39:42] 2024-05-18 23:39:23,146 | INFO     | executing command: cat /etc/os-release
[2024-05-18 16:39:42] 2024-05-18 23:39:23,162 | INFO     | cat /etc/os-release:
[2024-05-18 16:39:42] NAME="CentOS Linux"
[2024-05-18 16:39:42] VERSION="7 (Core)"
[2024-05-18 16:39:42] ID="centos"
[2024-05-18 16:39:42] ID_LIKE="rhel fedora"
[2024-05-18 16:39:42] VERSION_ID="7"
[2024-05-18 16:39:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-18 16:39:42] ANSI_COLOR="0;31"
[2024-05-18 16:39:42] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-18 16:39:42] HOME_URL="https://www.centos.org/"
[2024-05-18 16:39:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-18 16:39:42] 
[2024-05-18 16:39:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-18 16:39:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-18 16:39:42] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-18 16:39:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-18 16:39:42] 
[2024-05-18 16:39:42] 2024-05-18 23:39:23,162 | INFO     | *************************************
[2024-05-18 16:39:42] 2024-05-18 23:39:23,665 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-18 16:39:42] 2024-05-18 23:39:23,689 | INFO     | sufficient remaining disk space (1994448175104 B)
[2024-05-18 16:39:42] 2024-05-18 23:39:23,689 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-18 16:39:42] 2024-05-18 23:39:23,690 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-18 16:39:42] 2024-05-18 23:39:23,690 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-18 16:39:42] 2024-05-18 23:39:23,690 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-18 16:39:42] 2024-05-18 23:39:24,153 | INFO     | found 0 job(s) in 20 queues
[2024-05-18 16:39:42] 2024-05-18 23:39:24,153 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-18 16:39:42] 2024-05-18 23:39:24,153 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-18 16:39:42] 2024-05-18 23:39:24,283 | INFO     | all payload control threads have been joined
[2024-05-18 16:39:42] 2024-05-18 23:39:24,384 | INFO     | all data control threads have been joined
[2024-05-18 16:39:42] 2024-05-18 23:39:24,384 | INFO     | all job control threads have been joined
[2024-05-18 16:39:42] 2024-05-18 23:39:24,544 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-18 16:39:42] 2024-05-18 23:39:24,544 | INFO     | aborting loop
[2024-05-18 16:39:42] 2024-05-18 23:39:24,695 | INFO     | [job] retrieve thread has finished
[2024-05-18 16:39:42] 2024-05-18 23:39:24,810 | INFO     | [payload] validate_post thread has finished
[2024-05-18 16:39:42] 2024-05-18 23:39:25,240 | INFO     | [payload] failed_post thread has finished
[2024-05-18 16:39:42] 2024-05-18 23:39:25,288 | INFO     | [payload] control thread has finished
[2024-05-18 16:39:42] 2024-05-18 23:39:25,389 | INFO     | [data] control thread has finished
[2024-05-18 16:39:42] 2024-05-18 23:39:25,390 | INFO     | [job] control thread has finished
[2024-05-18 16:39:42] 2024-05-18 23:39:25,449 | INFO     | [job] validate thread has finished
[2024-05-18 16:39:42] 2024-05-18 23:39:25,545 | INFO     | [payload] execute_payloads thread has finished
[2024-05-18 16:39:42] 2024-05-18 23:39:25,550 | INFO     | [job] job monitor thread has finished
[2024-05-18 16:39:42] 2024-05-18 23:39:25,640 | INFO     | [payload] validate_pre thread has finished
[2024-05-18 16:39:42] 2024-05-18 23:39:25,696 | INFO     | [data] copytool_out thread has finished
[2024-05-18 16:39:42] 2024-05-18 23:39:25,866 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-18 16:39:42] 2024-05-18 23:39:26,035 | INFO     | [data] copytool_in thread has finished
[2024-05-18 16:39:42] 2024-05-18 23:39:26,107 | INFO     | [job] create_data_payload thread has finished
[2024-05-18 16:39:42] 2024-05-18 23:39:26,867 | INFO     | [job] queue monitor thread has finished
[2024-05-18 16:39:42] 2024-05-18 23:39:27,696 | INFO     | [data] queue_monitor thread has finished
[2024-05-18 16:39:42] 2024-05-18 23:39:33,931 | INFO     | job.realtimelogging is not enabled
[2024-05-18 16:39:42] 2024-05-18 23:39:34,937 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-18 16:39:42] 2024-05-18 23:39:36,025 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139930962634560)>', '<ExcThread(monitor, started 139930537801472)>']
[2024-05-18 16:39:42] 2024-05-18 23:39:36,210 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-18 16:39:42] 2024-05-18 23:39:36,210 | INFO     | [monitor] control thread has ended
[2024-05-18 16:39:42] 2024-05-18 23:39:41,049 | INFO     | all workflow threads have been joined
[2024-05-18 16:39:42] 2024-05-18 23:39:41,050 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-18 16:39:42] 2024-05-18 23:39:41,050 | INFO     | traces error code: 0
[2024-05-18 16:39:42] 2024-05-18 23:39:41,050 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-18 16:39:42] 2024-05-18 23:39:41,153 [wrapper] ==== pilot stdout END ====
[2024-05-18 16:39:42] 2024-05-18 23:39:41,155 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-18 16:39:42] 2024-05-18 23:39:41,157 [wrapper] pilotpid: 140492
[2024-05-18 16:39:42] 2024-05-18 23:39:41,159 [wrapper] Pilot exit status: 0
[2024-05-18 16:39:42] 2024-05-18 23:39:41,194 [wrapper] pandaids: 6209076252
[2024-05-18 16:39:42] 2024-05-18 23:39:41,334 [wrapper] cleanup: SIGTERM to supervisor_pilot  14895 140493
[2024-05-18 16:39:42] 2024-05-18 23:39:41,336 [wrapper] Test setup, not cleaning
[2024-05-18 16:39:42] 2024-05-18 23:39:41,337 [wrapper] ==== wrapper stdout END ====
[2024-05-18 16:39:42] 2024-05-18 23:39:41,339 [wrapper] ==== wrapper stderr END ====
[2024-05-18 16:39:42] 2024-05-18 23:39:41,342 [wrapper] apfmon messages muted
[2024-05-18 16:39:42]  *** Error codes and diagnostics ***
[2024-05-18 16:39:42]     "exeErrorCode": 0,
[2024-05-18 16:39:42]     "exeErrorDiag": "",
[2024-05-18 16:39:42]     "pilotErrorCode": 0,
[2024-05-18 16:39:42]     "pilotErrorDiag": "",
[2024-05-18 16:39:42]  *** Listing of results directory ***
[2024-05-18 16:39:42] total 871040
[2024-05-18 16:39:42] -rw-r--r-- 1 boinc boinc    467845 May 18 07:41 pilot3.tar.gz
[2024-05-18 16:39:42] -rw-r--r-- 1 boinc boinc      5633 May 18 07:55 queuedata.json
[2024-05-18 16:39:42] -rwx------ 1 boinc boinc     32251 May 18 07:56 runpilot2-wrapper.sh
[2024-05-18 16:39:42] -rw-r--r-- 1 boinc boinc       100 May 18 15:20 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-18 16:39:42] -rwxr-xr-x 1 boinc boinc      7986 May 18 15:20 run_atlas
[2024-05-18 16:39:42] -rw-r--r-- 1 boinc boinc       105 May 18 15:20 job.xml
[2024-05-18 16:39:42] -rw-r--r-- 1 boinc boinc      6626 May 18 15:20 init_data.xml
[2024-05-18 16:39:42] -rw-r--r-- 2 boinc boinc 612255594 May 18 15:20 EVNT.38776140._000245.pool.root.1
[2024-05-18 16:39:42] -rw-r--r-- 2 boinc boinc     17537 May 18 15:20 start_atlas.sh
[2024-05-18 16:39:42] drwxrwx--x 2 boinc boinc      4096 May 18 15:20 shared
[2024-05-18 16:39:42] -rw-r--r-- 2 boinc boinc    480002 May 18 15:20 input.tar.gz
[2024-05-18 16:39:42] -rw-r--r-- 1 boinc boinc         0 May 18 15:20 boinc_lockfile
[2024-05-18 16:39:42] -rw-r--r-- 1 boinc boinc      2614 May 18 15:20 pandaJob.out
[2024-05-18 16:39:42] -rw------- 1 boinc boinc       424 May 18 15:20 setup.sh.local
[2024-05-18 16:39:42] -rw------- 1 boinc boinc   1013712 May 18 15:21 agis_schedconf.cvmfs.json
[2024-05-18 16:39:42] -rw------- 1 boinc boinc         0 May 18 15:21 agis_ddmendpoints.agis.ALL.json
[2024-05-18 16:39:42] -rw------- 1 boinc boinc   1324701 May 18 15:21 cric_ddmendpoints.json
[2024-05-18 16:39:42] drwx------ 4 boinc boinc      4096 May 18 15:21 pilot3
[2024-05-18 16:39:42] -rw------- 1 boinc boinc 274525269 May 18 16:38 HITS.38776146._016467.pool.root.1
[2024-05-18 16:39:42] -rw-r--r-- 1 boinc boinc       530 May 18 16:38 boinc_task_state.xml
[2024-05-18 16:39:42] -rw------- 1 boinc boinc      1056 May 18 16:39 memory_monitor_summary.json
[2024-05-18 16:39:42] -rw------- 1 boinc boinc    363843 May 18 16:39 log.38776146._016467.job.log.tgz.1
[2024-05-18 16:39:42] -rw------- 1 boinc boinc      7768 May 18 16:39 heartbeat.json
[2024-05-18 16:39:42] -rw------- 1 boinc boinc        95 May 18 16:39 pilot_heartbeat.json
[2024-05-18 16:39:42] -rw------- 1 boinc boinc      4282 May 18 16:39 pilotlog.txt
[2024-05-18 16:39:42] -rw------- 1 boinc boinc    454464 May 18 16:39 log.38776146._016467.job.log.1
[2024-05-18 16:39:42] -rw------- 1 boinc boinc       357 May 18 16:39 output.list
[2024-05-18 16:39:42] -rw-r--r-- 1 boinc boinc       620 May 18 16:39 runtime_log
[2024-05-18 16:39:42] -rw------- 1 boinc boinc    839680 May 18 16:39 result.tar.gz
[2024-05-18 16:39:42] -rw-r--r-- 1 boinc boinc     11286 May 18 16:39 runtime_log.err
[2024-05-18 16:39:42] -rw------- 1 boinc boinc       653 May 18 16:39 lmQNDmFfaS5nsSi4apGgGQJmABFKDmABFKDm4ySLDmKlSKDmKqJMAn.diag
[2024-05-18 16:39:42] -rw-r--r-- 1 boinc boinc      8192 May 18 16:39 boinc_mmap_file
[2024-05-18 16:39:42] -rw-r--r-- 1 boinc boinc        27 May 18 16:39 wrapper_checkpoint.txt
[2024-05-18 16:39:42] -rw-r--r-- 1 boinc boinc     21533 May 18 16:39 stderr.txt
[2024-05-18 16:39:42] HITS file was successfully produced:
[2024-05-18 16:39:42] -rw------- 1 boinc boinc 274525269 May 18 16:38 shared/HITS.pool.root.1
[2024-05-18 16:39:42]  *** Contents of shared directory: ***
[2024-05-18 16:39:42] total 867320
[2024-05-18 16:39:42] -rw-r--r-- 2 boinc boinc 612255594 May 18 15:20 ATLAS.root_0
[2024-05-18 16:39:42] -rw-r--r-- 2 boinc boinc     17537 May 18 15:20 start_atlas.sh
[2024-05-18 16:39:42] -rw-r--r-- 2 boinc boinc    480002 May 18 15:20 input.tar.gz
[2024-05-18 16:39:42] -rw------- 1 boinc boinc 274525269 May 18 16:38 HITS.pool.root.1
[2024-05-18 16:39:42] -rw------- 1 boinc boinc    839680 May 18 16:39 result.tar.gz
16:39:44 (136324): run_atlas exited; CPU time 42493.647278
16:39:44 (136324): called boinc_finish(0)

</stderr_txt>
]]>

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