Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
13:40:48 (276131): wrapper (7.7.26015): starting
13:40:48 (276131): wrapper: running run_atlas (--nthreads 12)
[2024-05-18 13:40:48] Arguments: --nthreads 12
[2024-05-18 13:40:48] Threads: 12
[2024-05-18 13:40:48] Checking for CVMFS
[2024-05-18 13:40:49] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-18 13:40:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-18 13:40:49] Running cvmfs_config stat atlas.cern.ch
[2024-05-18 13:40:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-18 13:40:49] 2.10.1.0 2809 174153 179812 132889 1 77 27036777 45568001 12184 130560 0 1115505947 99.762 706415320 16549 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2024-05-18 13:40:49] CVMFS is ok
[2024-05-18 13:40:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-18 13:40:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-18 13:40:49] Further information can be found at the LHC@home message board.
[2024-05-18 13:40:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-18 13:40:49] Checking for apptainer binary...
[2024-05-18 13:40:49] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-18 13:40:49] Running /usr/bin/apptainer --version
[2024-05-18 13:40:49] apptainer version 1.1.8-1.el7
[2024-05-18 13:40:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-18 13:40:50] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0075.triumf.lcg
[2024-05-18 13:40:50] apptainer works
[2024-05-18 13:40:50] Set ATHENA_PROC_NUMBER=12
[2024-05-18 13:40:50] Set ATHENA_CORE_NUMBER=12
[2024-05-18 13:40:50] Starting ATLAS job with PandaID=6208787300
[2024-05-18 13:40:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-18 14:41:31]  *** The last 200 lines of the pilot log: ***
[2024-05-18 14:41:31]  filesize=336639
[2024-05-18 14:41:31]  filetype=log
[2024-05-18 14:41:31]  guid=75a63878-5f0d-424b-8ea0-f2be824423ef
[2024-05-18 14:41:31]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-18 14:41:31]  is_tar=False
[2024-05-18 14:41:31]  lfn=log.38776125._016738.job.log.tgz.1
[2024-05-18 14:41:31]  mtime=0
[2024-05-18 14:41:31]  protocol_id=None
[2024-05-18 14:41:31]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-18 14:41:31]  replicas=None
[2024-05-18 14:41:31]  scope=mc23_13p6TeV
[2024-05-18 14:41:31]  status=None
[2024-05-18 14:41:31]  status_code=0
[2024-05-18 14:41:31]  storage_token=
[2024-05-18 14:41:31]  surl=/home/boinc/slots/0/PanDA_Pilot-6208787300/log.38776125._016738.job.log.tgz.1
[2024-05-18 14:41:31]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e6/9e/log.38776125._016738.job.log.tgz.1
[2024-05-18 14:41:31]  workdir=None
[2024-05-18 14:41:31] ]
[2024-05-18 14:41:31] 2024-05-18 21:41:09,699 | INFO     | transferring file log.38776125._016738.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6208787300/log.38776125._016738.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-05-18 14:41:31] 2024-05-18 21:41:09,699 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6208787300/log.38776125._016738.job.log.tgz.1 /home/boinc/slots/0/log.38776125._016738.job.log.t
[2024-05-18 14:41:31] 2024-05-18 21:41:09,725 | INFO     | adding to output.list: log.38776125._016738.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e6/9e/log.38776125._016738.job.log.tg
[2024-05-18 14:41:31] 2024-05-18 21:41:09,726 | INFO     | summary of transferred files:
[2024-05-18 14:41:31] 2024-05-18 21:41:09,726 | INFO     |  -- lfn=log.38776125._016738.job.log.tgz.1, status_code=0, status=transferred
[2024-05-18 14:41:31] 2024-05-18 21:41:09,726 | INFO     | stage-out finished correctly
[2024-05-18 14:41:31] 2024-05-18 21:41:10,445 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-18 14:41:31] 2024-05-18 21:41:11,604 | WARNING  | process 12995 is no longer using CPU - aborting
[2024-05-18 14:41:31] 2024-05-18 21:41:11,764 | INFO     | 3612s have passed since pilot start
[2024-05-18 14:41:31] 2024-05-18 21:41:12,613 | INFO     | job 6208787300 has state=finished
[2024-05-18 14:41:31] 2024-05-18 21:41:12,613 | INFO     | preparing for final server update for job 6208787300 in state='finished'
[2024-05-18 14:41:31] 2024-05-18 21:41:12,614 | INFO     | this job has now completed (state=finished)
[2024-05-18 14:41:31] 2024-05-18 21:41:12,614 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-18 14:41:31] 2024-05-18 21:41:12,615 | INFO     | job 6208787300 has finished - writing final server update
[2024-05-18 14:41:31] 2024-05-18 21:41:12,615 | INFO     | total number of processed events: 400 (read)
[2024-05-18 14:41:31] 2024-05-18 21:41:12,621 | INFO     | executing command: lscpu
[2024-05-18 14:41:31] 2024-05-18 21:41:12,689 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-18 14:41:31] 2024-05-18 21:41:12,690 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-18 14:41:31] 2024-05-18 21:41:12,752 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-18 14:41:31] 2024-05-18 21:41:14,107 | INFO     | monitor loop #283: job 0:6208787300 is in state 'finished'
[2024-05-18 14:41:31] 2024-05-18 21:41:14,107 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 14:41:31] 2024-05-18 21:41:16,600 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-18 14:41:31] 2024-05-18 21:41:16,601 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6208787300/memory_monitor_summary.json (trf name=prmon)
[2024-05-18 14:41:31] 2024-05-18 21:41:16,602 | INFO     | extracted standard info from prmon json
[2024-05-18 14:41:31] 2024-05-18 21:41:16,603 | INFO     | extracted standard memory fields from prmon json
[2024-05-18 14:41:31] 2024-05-18 21:41:16,603 | WARNING  | GPU info not found in prmon json
[2024-05-18 14:41:31] 2024-05-18 21:41:16,603 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-18 14:41:31] 2024-05-18 21:41:16,603 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-18 14:41:31] 2024-05-18 21:41:16,606 | INFO     | fitting pss+swap vs Time
[2024-05-18 14:41:31] 2024-05-18 21:41:16,606 | INFO     | model: linear, x: [1716065190.0, 1716065251.0, 1716065312.0, 1716065373.0, 1716065434.0, 1716065495.0, 1716065556.0, 1716065617.0, 1716065678.0, 1716065739.0, 1716
[2024-05-18 14:41:31] 2024-05-18 21:41:16,606 | INFO     | sum of square deviations: 43584073.0
[2024-05-18 14:41:31] 2024-05-18 21:41:16,606 | INFO     | sum of deviations: 13478115432.0
[2024-05-18 14:41:31] 2024-05-18 21:41:16,607 | INFO     | mean x: 1716066745.5
[2024-05-18 14:41:31] 2024-05-18 21:41:16,607 | INFO     | mean y: 2614196.3076923075
[2024-05-18 14:41:31] 2024-05-18 21:41:16,607 | INFO     | -- intersect: -530680823417.831
[2024-05-18 14:41:31] 2024-05-18 21:41:16,607 | INFO     | intersect: -530680823417.831
[2024-05-18 14:41:31] 2024-05-18 21:41:16,607 | INFO     | chi2: 2.2621985330363756
[2024-05-18 14:41:31] 2024-05-18 21:41:16,607 | INFO     | -- intersect: -530680823417.831
[2024-05-18 14:41:31] 2024-05-18 21:41:16,608 | INFO     | current memory leak: 309.24 B/s (using 52 data points, chi2=2.26)
[2024-05-18 14:41:31] 2024-05-18 21:41:16,608 | INFO     | ..............................
[2024-05-18 14:41:31] 2024-05-18 21:41:16,608 | INFO     | . Timing measurements:
[2024-05-18 14:41:31] 2024-05-18 21:41:16,608 | INFO     | . get job = 0 s
[2024-05-18 14:41:31] 2024-05-18 21:41:16,608 | INFO     | . initial setup = 2 s
[2024-05-18 14:41:31] 2024-05-18 21:41:16,608 | INFO     | . payload setup = 5 s
[2024-05-18 14:41:31] 2024-05-18 21:41:16,609 | INFO     | . stage-in = 0 s
[2024-05-18 14:41:31] 2024-05-18 21:41:16,609 | INFO     | . payload execution = 3583 s
[2024-05-18 14:41:31] 2024-05-18 21:41:16,609 | INFO     | . stage-out = 0 s
[2024-05-18 14:41:31] 2024-05-18 21:41:16,609 | INFO     | . log creation = 0 s
[2024-05-18 14:41:31] 2024-05-18 21:41:16,609 | INFO     | ..............................
[2024-05-18 14:41:31] 2024-05-18 21:41:16,610 | INFO     | monitor loop #284: job 0:6208787300 is in state 'finished'
[2024-05-18 14:41:31] 2024-05-18 21:41:16,610 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 14:41:31] 2024-05-18 21:41:16,699 | INFO     | 
[2024-05-18 14:41:31] 2024-05-18 21:41:16,699 | INFO     | job summary report
[2024-05-18 14:41:31] 2024-05-18 21:41:16,699 | INFO     | --------------------------------------------------
[2024-05-18 14:41:31] 2024-05-18 21:41:16,699 | INFO     | PanDA job id: 6208787300
[2024-05-18 14:41:31] 2024-05-18 21:41:16,700 | INFO     | task id: 38776125
[2024-05-18 14:41:31] 2024-05-18 21:41:16,700 | INFO     | errors: (none)
[2024-05-18 14:41:31] 2024-05-18 21:41:16,700 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-18 14:41:31] 2024-05-18 21:41:16,700 | INFO     | pilot state: finished 
[2024-05-18 14:41:31] 2024-05-18 21:41:16,700 | INFO     | transexitcode: 0
[2024-05-18 14:41:31] 2024-05-18 21:41:16,700 | INFO     | exeerrorcode: 0
[2024-05-18 14:41:31] 2024-05-18 21:41:16,700 | INFO     | exeerrordiag: 
[2024-05-18 14:41:31] 2024-05-18 21:41:16,700 | INFO     | exitcode: 0
[2024-05-18 14:41:31] 2024-05-18 21:41:16,700 | INFO     | exitmsg: OK
[2024-05-18 14:41:31] 2024-05-18 21:41:16,700 | INFO     | cpuconsumptiontime: 31856 s
[2024-05-18 14:41:31] 2024-05-18 21:41:16,700 | INFO     | nevents: 400
[2024-05-18 14:41:31] 2024-05-18 21:41:16,700 | INFO     | neventsw: 0
[2024-05-18 14:41:31] 2024-05-18 21:41:16,700 | INFO     | pid: 12995
[2024-05-18 14:41:31] 2024-05-18 21:41:16,700 | INFO     | pgrp: 12995
[2024-05-18 14:41:31] 2024-05-18 21:41:16,700 | INFO     | corecount: 12
[2024-05-18 14:41:31] 2024-05-18 21:41:16,700 | INFO     | event service: False
[2024-05-18 14:41:31] 2024-05-18 21:41:16,701 | INFO     | sizes: {0: 2392236, 4: 2392442, 11: 2392470, 3591: 2418157, 3592: 2418156, 3593: 2427166, 3594: 2427350, 3600: 2427520}
[2024-05-18 14:41:31] 2024-05-18 21:41:16,701 | INFO     | --------------------------------------------------
[2024-05-18 14:41:31] 2024-05-18 21:41:16,701 | INFO     | 
[2024-05-18 14:41:31] 2024-05-18 21:41:16,701 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-18 14:41:31] 2024-05-18 21:41:16,730 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-18 14:41:31] 2024-05-18 21:41:16,731 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-18 14:41:31] 2024-05-18 21:41:16,731 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-18 14:41:31] 2024-05-18 21:41:16,731 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-18 14:41:31] 2024-05-18 21:41:16,731 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-18 14:41:31] 2024-05-18 21:41:16,731 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-18 14:41:31] 2024-05-18 21:41:16,731 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-18 14:41:31] 2024-05-18 21:41:16,731 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-18 14:41:31] 2024-05-18 21:41:16,731 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-18 14:41:31] 2024-05-18 21:41:16,731 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-18 14:41:31] 2024-05-18 21:41:16,731 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-18 14:41:31] 2024-05-18 21:41:16,731 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-18 14:41:31] 2024-05-18 21:41:16,731 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-18 14:41:31] 2024-05-18 21:41:16,731 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-18 14:41:31] 2024-05-18 21:41:16,731 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-18 14:41:31] 2024-05-18 21:41:16,732 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-18 14:41:31] 2024-05-18 21:41:16,732 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-18 14:41:31] 2024-05-18 21:41:16,732 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-18 14:41:31] 2024-05-18 21:41:16,732 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-18 14:41:31] 2024-05-18 21:41:16,732 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-18 14:41:31] 2024-05-18 21:41:16,732 | INFO     | job 6208787300 has completed (purged errors)
[2024-05-18 14:41:31] 2024-05-18 21:41:16,732 | INFO     | overall cleanup function is called
[2024-05-18 14:41:31] 2024-05-18 21:41:17,739 | INFO     | --- collectZombieJob: --- 10, [12995]
[2024-05-18 14:41:31] 2024-05-18 21:41:17,739 | INFO     | zombie collector waiting for pid 12995
[2024-05-18 14:41:31] 2024-05-18 21:41:17,739 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-18 14:41:31] 2024-05-18 21:41:18,743 | INFO     | collected zombie processes
[2024-05-18 14:41:31] 2024-05-18 21:41:18,743 | INFO     | will now attempt to kill all subprocesses of pid=12995
[2024-05-18 14:41:31] 2024-05-18 21:41:18,943 | INFO     | process IDs to be killed: [12995] (in reverse order)
[2024-05-18 14:41:31] 2024-05-18 21:41:19,073 | WARNING  | found no corresponding commands to process id(s)
[2024-05-18 14:41:31] 2024-05-18 21:41:19,074 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-18 14:41:31] 2024-05-18 21:41:19,080 | INFO     | did not find any defunct processes belonging to 12995
[2024-05-18 14:41:31] 2024-05-18 21:41:19,086 | INFO     | did not find any defunct processes belonging to 12995
[2024-05-18 14:41:31] 2024-05-18 21:41:19,086 | INFO     | ready for new job
[2024-05-18 14:41:31] 2024-05-18 21:41:19,086 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-18 14:41:31] 2024-05-18 21:41:19,088 | INFO     | *************************************
[2024-05-18 14:41:31] 2024-05-18 21:41:19,088 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-18 14:41:31] 2024-05-18 21:41:19,088 | INFO     | *************************************
[2024-05-18 14:41:31] 2024-05-18 21:41:19,088 | INFO     | 
[2024-05-18 14:41:31] 2024-05-18 21:41:19,090 | INFO     | architecture information:
[2024-05-18 14:41:31] 2024-05-18 21:41:19,090 | INFO     | executing command: cat /etc/os-release
[2024-05-18 14:41:31] 2024-05-18 21:41:19,112 | INFO     | cat /etc/os-release:
[2024-05-18 14:41:31] NAME="CentOS Linux"
[2024-05-18 14:41:31] VERSION="7 (Core)"
[2024-05-18 14:41:31] ID="centos"
[2024-05-18 14:41:31] ID_LIKE="rhel fedora"
[2024-05-18 14:41:31] VERSION_ID="7"
[2024-05-18 14:41:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-18 14:41:31] ANSI_COLOR="0;31"
[2024-05-18 14:41:31] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-18 14:41:31] HOME_URL="https://www.centos.org/"
[2024-05-18 14:41:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-18 14:41:31] 
[2024-05-18 14:41:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-18 14:41:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-18 14:41:31] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-18 14:41:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-18 14:41:31] 
[2024-05-18 14:41:31] 2024-05-18 21:41:19,112 | INFO     | *************************************
[2024-05-18 14:41:31] 2024-05-18 21:41:19,615 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-18 14:41:31] 2024-05-18 21:41:19,635 | INFO     | sufficient remaining disk space (2151864598528 B)
[2024-05-18 14:41:31] 2024-05-18 21:41:19,636 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-18 14:41:31] 2024-05-18 21:41:19,636 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-18 14:41:31] 2024-05-18 21:41:19,636 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-18 14:41:31] 2024-05-18 21:41:19,637 | INFO     | found 0 job(s) in 20 queues
[2024-05-18 14:41:31] 2024-05-18 21:41:19,637 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-18 14:41:31] 2024-05-18 21:41:19,637 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-18 14:41:31] 2024-05-18 21:41:20,057 | INFO     | all payload control threads have been joined
[2024-05-18 14:41:31] 2024-05-18 21:41:20,067 | INFO     | all data control threads have been joined
[2024-05-18 14:41:31] 2024-05-18 21:41:20,118 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-18 14:41:31] 2024-05-18 21:41:20,118 | INFO     | aborting loop
[2024-05-18 14:41:31] 2024-05-18 21:41:20,292 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-18 14:41:31] 2024-05-18 21:41:20,360 | INFO     | all job control threads have been joined
[2024-05-18 14:41:31] 2024-05-18 21:41:20,640 | INFO     | [job] retrieve thread has finished
[2024-05-18 14:41:31] 2024-05-18 21:41:20,808 | INFO     | [payload] validate_post thread has finished
[2024-05-18 14:41:31] 2024-05-18 21:41:20,922 | INFO     | [payload] execute_payloads thread has finished
[2024-05-18 14:41:31] 2024-05-18 21:41:20,922 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-18 14:41:31] 2024-05-18 21:41:20,924 | INFO     | [job] validate thread has finished
[2024-05-18 14:41:31] 2024-05-18 21:41:21,047 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-18 14:41:31] 2024-05-18 21:41:21,063 | INFO     | [payload] control thread has finished
[2024-05-18 14:41:31] 2024-05-18 21:41:21,070 | INFO     | [data] control thread has finished
[2024-05-18 14:41:31] 2024-05-18 21:41:21,124 | INFO     | [job] job monitor thread has finished
[2024-05-18 14:41:31] 2024-05-18 21:41:21,227 | INFO     | [payload] validate_pre thread has finished
[2024-05-18 14:41:31] 2024-05-18 21:41:21,228 | INFO     | [job] create_data_payload thread has finished
[2024-05-18 14:41:31] 2024-05-18 21:41:21,360 | INFO     | [job] control thread has finished
[2024-05-18 14:41:31] 2024-05-18 21:41:21,705 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-18 14:41:31] 2024-05-18 21:41:21,837 | INFO     | [payload] failed_post thread has finished
[2024-05-18 14:41:31] 2024-05-18 21:41:21,910 | INFO     | [data] copytool_in thread has finished
[2024-05-18 14:41:31] 2024-05-18 21:41:22,298 | INFO     | [data] copytool_out thread has finished
[2024-05-18 14:41:31] 2024-05-18 21:41:22,711 | INFO     | [job] queue monitor thread has finished
[2024-05-18 14:41:31] 2024-05-18 21:41:25,053 | INFO     | [data] queue_monitor thread has finished
[2024-05-18 14:41:31] 2024-05-18 21:41:25,966 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140395857622848)>', '<ExcThread(monitor, started 140395644901120)>']
[2024-05-18 14:41:31] 2024-05-18 21:41:26,663 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-18 14:41:31] 2024-05-18 21:41:26,663 | INFO     | [monitor] control thread has ended
[2024-05-18 14:41:31] 2024-05-18 21:41:30,970 | INFO     | all workflow threads have been joined
[2024-05-18 14:41:31] 2024-05-18 21:41:30,970 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-18 14:41:31] 2024-05-18 21:41:30,970 | INFO     | traces error code: 0
[2024-05-18 14:41:31] 2024-05-18 21:41:30,971 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-18 14:41:31] 2024-05-18 21:41:31,085 [wrapper] ==== pilot stdout END ====
[2024-05-18 14:41:31] 2024-05-18 21:41:31,088 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-18 14:41:31] 2024-05-18 21:41:31,093 [wrapper] pilotpid: 2239
[2024-05-18 14:41:31] 2024-05-18 21:41:31,097 [wrapper] Pilot exit status: 0
[2024-05-18 14:41:31] 2024-05-18 21:41:31,106 [wrapper] pandaids: 6208787300
[2024-05-18 14:41:31] 2024-05-18 21:41:31,193 [wrapper] cleanup: SIGTERM to supervisor_pilot 143267 2240
[2024-05-18 14:41:31] 2024-05-18 21:41:31,197 [wrapper] Test setup, not cleaning
[2024-05-18 14:41:31] 2024-05-18 21:41:31,201 [wrapper] ==== wrapper stdout END ====
[2024-05-18 14:41:31] 2024-05-18 21:41:31,205 [wrapper] ==== wrapper stderr END ====
[2024-05-18 14:41:31] 2024-05-18 21:41:31,211 [wrapper] apfmon messages muted
[2024-05-18 14:41:31]  *** Error codes and diagnostics ***
[2024-05-18 14:41:31]     "exeErrorCode": 0,
[2024-05-18 14:41:31]     "exeErrorDiag": "",
[2024-05-18 14:41:31]     "pilotErrorCode": 0,
[2024-05-18 14:41:31]     "pilotErrorDiag": "",
[2024-05-18 14:41:31]  *** Listing of results directory ***
[2024-05-18 14:41:31] total 837180
[2024-05-18 14:41:31] -rw-r--r-- 1 boinc boinc    467845 May 18 06:23 pilot3.tar.gz
[2024-05-18 14:41:31] -rwx------ 1 boinc boinc     32251 May 18 06:30 runpilot2-wrapper.sh
[2024-05-18 14:41:31] -rw-r--r-- 1 boinc boinc      5633 May 18 06:30 queuedata.json
[2024-05-18 14:41:31] -rw-r--r-- 1 boinc boinc       100 May 18 13:40 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-18 14:41:31] -rwxr-xr-x 1 boinc boinc      7986 May 18 13:40 run_atlas
[2024-05-18 14:41:31] -rw-r--r-- 1 boinc boinc       105 May 18 13:40 job.xml
[2024-05-18 14:41:31] -rw-r--r-- 1 boinc boinc      6626 May 18 13:40 init_data.xml
[2024-05-18 14:41:31] -rw-r--r-- 2 boinc boinc 602528789 May 18 13:40 EVNT.38776119._000398.pool.root.1
[2024-05-18 14:41:31] -rw-r--r-- 2 boinc boinc     17537 May 18 13:40 start_atlas.sh
[2024-05-18 14:41:31] drwxrwx--x 2 boinc boinc      4096 May 18 13:40 shared
[2024-05-18 14:41:31] -rw-r--r-- 2 boinc boinc    480014 May 18 13:40 input.tar.gz
[2024-05-18 14:41:31] -rw-r--r-- 1 boinc boinc         0 May 18 13:40 boinc_lockfile
[2024-05-18 14:41:31] -rw-r--r-- 1 boinc boinc      2631 May 18 13:40 pandaJob.out
[2024-05-18 14:41:31] -rw------- 1 boinc boinc       424 May 18 13:40 setup.sh.local
[2024-05-18 14:41:31] -rw------- 1 boinc boinc   1019075 May 18 13:40 agis_schedconf.cvmfs.json
[2024-05-18 14:41:31] -rw------- 1 boinc boinc         0 May 18 13:41 agis_ddmendpoints.agis.ALL.json
[2024-05-18 14:41:31] -rw------- 1 boinc boinc   1324701 May 18 13:41 cric_ddmendpoints.json
[2024-05-18 14:41:31] drwx------ 4 boinc boinc      4096 May 18 13:41 pilot3
[2024-05-18 14:41:31] -rw------- 1 boinc boinc 249795924 May 18 14:40 HITS.38776125._016738.pool.root.1
[2024-05-18 14:41:31] -rw-r--r-- 1 boinc boinc       531 May 18 14:40 boinc_task_state.xml
[2024-05-18 14:41:31] -rw------- 1 boinc boinc      1040 May 18 14:41 memory_monitor_summary.json
[2024-05-18 14:41:31] -rw------- 1 boinc boinc        95 May 18 14:41 pilot_heartbeat.json
[2024-05-18 14:41:31] -rw------- 1 boinc boinc    336639 May 18 14:41 log.38776125._016738.job.log.tgz.1
[2024-05-18 14:41:31] -rw------- 1 boinc boinc      7749 May 18 14:41 heartbeat.json
[2024-05-18 14:41:31] -rw-r--r-- 1 boinc boinc      8192 May 18 14:41 boinc_mmap_file
[2024-05-18 14:41:31] -rw-r--r-- 1 boinc boinc        27 May 18 14:41 wrapper_checkpoint.txt
[2024-05-18 14:41:31] -rw------- 1 boinc boinc      4333 May 18 14:41 pilotlog.txt
[2024-05-18 14:41:31] -rw------- 1 boinc boinc    367323 May 18 14:41 log.38776125._016738.job.log.1
[2024-05-18 14:41:31] -rw------- 1 boinc boinc       357 May 18 14:41 output.list
[2024-05-18 14:41:31] -rw-r--r-- 1 boinc boinc       620 May 18 14:41 runtime_log
[2024-05-18 14:41:31] -rw------- 1 boinc boinc    727040 May 18 14:41 result.tar.gz
[2024-05-18 14:41:31] -rw-r--r-- 1 boinc boinc     11286 May 18 14:41 runtime_log.err
[2024-05-18 14:41:31] -rw------- 1 boinc boinc       651 May 18 14:41 0HuKDm9JZS5n7Olcko1bjSoqABFKDmABFKDmOtvXDm2EaKDmmRKyEm.diag
[2024-05-18 14:41:31] -rw-r--r-- 1 boinc boinc     21603 May 18 14:41 stderr.txt
[2024-05-18 14:41:31] HITS file was successfully produced:
[2024-05-18 14:41:31] -rw------- 1 boinc boinc 249795924 May 18 14:40 shared/HITS.pool.root.1
[2024-05-18 14:41:31]  *** Contents of shared directory: ***
[2024-05-18 14:41:31] total 833564
[2024-05-18 14:41:31] -rw-r--r-- 2 boinc boinc 602528789 May 18 13:40 ATLAS.root_0
[2024-05-18 14:41:31] -rw-r--r-- 2 boinc boinc     17537 May 18 13:40 start_atlas.sh
[2024-05-18 14:41:31] -rw-r--r-- 2 boinc boinc    480014 May 18 13:40 input.tar.gz
[2024-05-18 14:41:31] -rw------- 1 boinc boinc 249795924 May 18 14:40 HITS.pool.root.1
[2024-05-18 14:41:31] -rw------- 1 boinc boinc    727040 May 18 14:41 result.tar.gz
14:41:33 (276131): run_atlas exited; CPU time 31733.429927
14:41:33 (276131): called boinc_finish(0)

</stderr_txt>
]]>

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