Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:29:46 (3691332): wrapper (7.7.26015): starting
01:29:46 (3691332): wrapper: running run_atlas (--nthreads 4)
[2024-05-22 01:29:46] Arguments: --nthreads 4
[2024-05-22 01:29:46] Threads: 4
[2024-05-22 01:29:46] Checking for CVMFS
[2024-05-22 01:29:46] No cvmfs_config command found, will try listing directly
[2024-05-22 01:29:46] CVMFS is ok
[2024-05-22 01:29:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-22 01:29:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-22 01:29:46] Further information can be found at the LHC@home message board.
[2024-05-22 01:29:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-22 01:29:46] Checking for apptainer binary...
[2024-05-22 01:29:46] which: no apptainer in ((null))
[2024-05-22 01:29:46] apptainer is not installed, using version from CVMFS
[2024-05-22 01:29:46] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-22 01:29:47] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot60/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut06.grid.cesnet.cz
[2024-05-22 01:29:47] apptainer works
[2024-05-22 01:29:47] Set ATHENA_PROC_NUMBER=4
[2024-05-22 01:29:47] Set ATHENA_CORE_NUMBER=4
[2024-05-22 01:29:47] Starting ATLAS job with PandaID=6208730947
[2024-05-22 01:29:47] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot60/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-22 03:49:06]  *** The last 200 lines of the pilot log: ***
[2024-05-22 03:49:06] 2024-05-22 01:44:02,205 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-22 03:49:06] 2024-05-22 01:44:02,207 | INFO     | fitting pss+swap vs Time
[2024-05-22 03:49:06] 2024-05-22 01:44:02,207 | INFO     | model: linear, x: [1716334217.0, 1716334278.0, 1716334339.0, 1716334400.0, 1716334461.0, 1716334522.0, 1716334583.0, 1716334644.0, 1716334705.0, 1716334766.0, 1716
[2024-05-22 03:49:06] 2024-05-22 01:44:02,213 | INFO     | sum of square deviations: 713140813.0
[2024-05-22 03:49:06] 2024-05-22 01:44:02,213 | INFO     | sum of deviations: 21904543496.999996
[2024-05-22 03:49:06] 2024-05-22 01:44:02,213 | INFO     | mean x: 1716338212.5
[2024-05-22 03:49:06] 2024-05-22 01:44:02,213 | INFO     | mean y: 2301257.484848485
[2024-05-22 03:49:06] 2024-05-22 01:44:02,213 | INFO     | -- intersect: -52716046011.288666
[2024-05-22 03:49:06] 2024-05-22 01:44:02,213 | INFO     | intersect: -52716046011.288666
[2024-05-22 03:49:06] 2024-05-22 01:44:02,214 | INFO     | chi2: 4.5918416793094385
[2024-05-22 03:49:06] 2024-05-22 01:44:02,214 | INFO     | model: linear, x: [1716334217.0, 1716334278.0, 1716334339.0, 1716334400.0, 1716334461.0, 1716334522.0, 1716334583.0, 1716334644.0, 1716334705.0, 1716334766.0, 1716
[2024-05-22 03:49:06] 2024-05-22 01:44:02,214 | INFO     | sum of square deviations: 635130048.0
[2024-05-22 03:49:06] 2024-05-22 01:44:02,214 | INFO     | sum of deviations: 29608404785.000004
[2024-05-22 03:49:06] 2024-05-22 01:44:02,214 | INFO     | mean x: 1716338060.0
[2024-05-22 03:49:06] 2024-05-22 01:44:02,214 | INFO     | mean y: 2315818.472440945
[2024-05-22 03:49:06] 2024-05-22 01:44:02,214 | INFO     | -- intersect: -80009694616.87956
[2024-05-22 03:49:06] 2024-05-22 01:44:02,215 | INFO     | intersect: -80009694616.87956
[2024-05-22 03:49:06] 2024-05-22 01:44:02,215 | INFO     | chi2: 3.822563240523338
[2024-05-22 03:49:06] 2024-05-22 01:44:02,215 | INFO     | current chi2=3.822563240523338 (change=16.75315684886138 %)
[2024-05-22 03:49:06] 2024-05-22 01:44:02,215 | INFO     | right removable region: 126
[2024-05-22 03:49:06] 2024-05-22 01:44:02,215 | INFO     | model: linear, x: [1716334522.0, 1716334583.0, 1716334644.0, 1716334705.0, 1716334766.0, 1716334827.0, 1716334888.0, 1716334949.0, 1716335010.0, 1716335071.0, 1716
[2024-05-22 03:49:06] 2024-05-22 01:44:02,215 | INFO     | sum of square deviations: 635130048.0
[2024-05-22 03:49:06] 2024-05-22 01:44:02,215 | INFO     | sum of deviations: -6092621196.000004
[2024-05-22 03:49:06] 2024-05-22 01:44:02,215 | INFO     | mean x: 1716338365.0
[2024-05-22 03:49:06] 2024-05-22 01:44:02,215 | INFO     | mean y: 2355692.897637795
[2024-05-22 03:49:06] 2024-05-22 01:44:02,215 | INFO     | -- intersect: 16466699546.625988
[2024-05-22 03:49:06] 2024-05-22 01:44:02,215 | INFO     | intersect: 16466699546.625988
[2024-05-22 03:49:06] 2024-05-22 01:44:02,216 | INFO     | chi2: 2.259503300252841
[2024-05-22 03:49:06] 2024-05-22 01:44:02,216 | INFO     | current chi2=2.259503300252841 (change=50.793092226284145 %)
[2024-05-22 03:49:06] 2024-05-22 01:44:02,216 | INFO     | model: linear, x: [1716334827.0, 1716334888.0, 1716334949.0, 1716335010.0, 1716335071.0, 1716335132.0, 1716335193.0, 1716335254.0, 1716335315.0, 1716335376.0, 1716
[2024-05-22 03:49:06] 2024-05-22 01:44:02,216 | INFO     | sum of square deviations: 563026370.5
[2024-05-22 03:49:06] 2024-05-22 01:44:02,216 | INFO     | sum of deviations: -27187432697.999992
[2024-05-22 03:49:06] 2024-05-22 01:44:02,216 | INFO     | mean x: 1716338517.5
[2024-05-22 03:49:06] 2024-05-22 01:44:02,216 | INFO     | mean y: 2400322.1639344264
[2024-05-22 03:49:06] 2024-05-22 01:44:02,216 | INFO     | -- intersect: 82881001354.7888
[2024-05-22 03:49:06] 2024-05-22 01:44:02,216 | INFO     | intersect: 82881001354.7888
[2024-05-22 03:49:06] 2024-05-22 01:44:02,217 | INFO     | chi2: 1.0078118219908878
[2024-05-22 03:49:06] 2024-05-22 01:44:02,217 | INFO     | current chi2=1.0078118219908878 (change=55.396753707856384 %)
[2024-05-22 03:49:06] 2024-05-22 01:44:02,217 | INFO     | model: linear, x: [1716335132.0, 1716335193.0, 1716335254.0, 1716335315.0, 1716335376.0, 1716335437.0, 1716335498.0, 1716335559.0, 1716335620.0, 1716335681.0, 1716
[2024-05-22 03:49:06] 2024-05-22 01:44:02,217 | INFO     | sum of square deviations: 496597218.0
[2024-05-22 03:49:06] 2024-05-22 01:44:02,217 | INFO     | sum of deviations: -26925198151.0
[2024-05-22 03:49:06] 2024-05-22 01:44:02,217 | INFO     | mean x: 1716338670.0
[2024-05-22 03:49:06] 2024-05-22 01:44:02,217 | INFO     | mean y: 2399562.2136752135
[2024-05-22 03:49:06] 2024-05-22 01:44:02,217 | INFO     | -- intersect: 93061234990.43349
[2024-05-22 03:49:06] 2024-05-22 01:44:02,217 | INFO     | intersect: 93061234990.43349
[2024-05-22 03:49:06] 2024-05-22 01:44:02,217 | INFO     | chi2: 0.9718662597690839
[2024-05-22 03:49:06] 2024-05-22 01:44:02,217 | INFO     | current chi2=0.9718662597690839 (change=3.566693844769058 %)
[2024-05-22 03:49:06] 2024-05-22 01:44:02,217 | INFO     | left removable region: 30
[2024-05-22 03:49:06] 2024-05-22 01:44:02,218 | INFO     | model: linear, x: [1716336047.0, 1716336108.0, 1716336169.0, 1716336230.0, 1716336291.0, 1716336352.0, 1716336413.0, 1716336474.0, 1716336535.0, 1716336596.0, 1716
[2024-05-22 03:49:06] 2024-05-22 01:44:02,218 | INFO     | sum of square deviations: 274312120.0
[2024-05-22 03:49:06] 2024-05-22 01:44:02,218 | INFO     | sum of deviations: -10307092804.5
[2024-05-22 03:49:06] 2024-05-22 01:44:02,218 | INFO     | mean x: 1716338944.5
[2024-05-22 03:49:06] 2024-05-22 01:44:02,218 | INFO     | mean y: 2396521.90625
[2024-05-22 03:49:06] 2024-05-22 01:44:02,218 | INFO     | -- intersect: 64492674184.22418
[2024-05-22 03:49:06] 2024-05-22 01:44:02,218 | INFO     | intersect: 64492674184.22418
[2024-05-22 03:49:06] 2024-05-22 01:44:02,219 | INFO     | chi2: 0.11673433616911687
[2024-05-22 03:49:06] 2024-05-22 01:44:02,219 | INFO     | -- intersect: 64492674184.22418
[2024-05-22 03:49:06] 2024-05-22 01:44:02,219 | INFO     | current memory leak: -37.57 B/s (using 96 data points, chi2=0.12)
[2024-05-22 03:49:06] 2024-05-22 01:44:02,219 | INFO     | ..............................
[2024-05-22 03:49:06] 2024-05-22 01:44:02,219 | INFO     | . Timing measurements:
[2024-05-22 03:49:06] 2024-05-22 01:44:02,219 | INFO     | . get job = 0 s
[2024-05-22 03:49:06] 2024-05-22 01:44:02,219 | INFO     | . initial setup = 1 s
[2024-05-22 03:49:06] 2024-05-22 01:44:02,219 | INFO     | . payload setup = 4 s
[2024-05-22 03:49:06] 2024-05-22 01:44:02,219 | INFO     | . stage-in = 0 s
[2024-05-22 03:49:06] 2024-05-22 01:44:02,220 | INFO     | . payload execution = 8016 s
[2024-05-22 03:49:06] 2024-05-22 01:44:02,220 | INFO     | . stage-out = 0 s
[2024-05-22 03:49:06] 2024-05-22 01:44:02,220 | INFO     | . log creation = 0 s
[2024-05-22 03:49:06] 2024-05-22 01:44:02,220 | INFO     | ..............................
[2024-05-22 03:49:06] 2024-05-22 01:44:02,382 | WARNING  | process 3702986 is no longer using CPU - aborting
[2024-05-22 03:49:06] 2024-05-22 01:44:02,382 | INFO     | aborting job monitoring since job object (job id=6208730947) has expired
[2024-05-22 03:49:06] 2024-05-22 01:44:02,577 | INFO     | 
[2024-05-22 03:49:06] 2024-05-22 01:44:02,577 | INFO     | job summary report
[2024-05-22 03:49:06] 2024-05-22 01:44:02,577 | INFO     | --------------------------------------------------
[2024-05-22 03:49:06] 2024-05-22 01:44:02,577 | INFO     | PanDA job id: 6208730947
[2024-05-22 03:49:06] 2024-05-22 01:44:02,577 | INFO     | task id: 38776104
[2024-05-22 03:49:06] 2024-05-22 01:44:02,577 | INFO     | errors: (none)
[2024-05-22 03:49:06] 2024-05-22 01:44:02,577 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-22 03:49:06] 2024-05-22 01:44:02,577 | INFO     | pilot state: finished 
[2024-05-22 03:49:06] 2024-05-22 01:44:02,577 | INFO     | transexitcode: 0
[2024-05-22 03:49:06] 2024-05-22 01:44:02,577 | INFO     | exeerrorcode: 0
[2024-05-22 03:49:06] 2024-05-22 01:44:02,577 | INFO     | exeerrordiag: 
[2024-05-22 03:49:06] 2024-05-22 01:44:02,577 | INFO     | exitcode: 0
[2024-05-22 03:49:06] 2024-05-22 01:44:02,577 | INFO     | exitmsg: OK
[2024-05-22 03:49:06] 2024-05-22 01:44:02,577 | INFO     | cpuconsumptiontime: 29225 s
[2024-05-22 03:49:06] 2024-05-22 01:44:02,577 | INFO     | nevents: 400
[2024-05-22 03:49:06] 2024-05-22 01:44:02,578 | INFO     | neventsw: 0
[2024-05-22 03:49:06] 2024-05-22 01:44:02,578 | INFO     | pid: 3702986
[2024-05-22 03:49:06] 2024-05-22 01:44:02,578 | INFO     | pgrp: 3702986
[2024-05-22 03:49:06] 2024-05-22 01:44:02,578 | INFO     | corecount: 4
[2024-05-22 03:49:06] 2024-05-22 01:44:02,578 | INFO     | event service: False
[2024-05-22 03:49:06] 2024-05-22 01:44:02,578 | INFO     | sizes: {0: 2392218, 3: 2392424, 11: 2392452, 8024: 2429160, 8027: 2429160, 8033: 2429330}
[2024-05-22 03:49:06] 2024-05-22 01:44:02,578 | INFO     | --------------------------------------------------
[2024-05-22 03:49:06] 2024-05-22 01:44:02,578 | INFO     | 
[2024-05-22 03:49:06] 2024-05-22 01:44:02,578 | INFO     | executing command: ls -lF /scratch/boinc/var/slot60/slots/0
[2024-05-22 03:49:06] 2024-05-22 01:44:02,597 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-22 03:49:06] 2024-05-22 01:44:02,598 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-22 03:49:06] 2024-05-22 01:44:02,598 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-22 03:49:06] 2024-05-22 01:44:02,598 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-22 03:49:06] 2024-05-22 01:44:02,598 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-22 03:49:06] 2024-05-22 01:44:02,598 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-22 03:49:06] 2024-05-22 01:44:02,598 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-22 03:49:06] 2024-05-22 01:44:02,598 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-22 03:49:06] 2024-05-22 01:44:02,598 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-22 03:49:06] 2024-05-22 01:44:02,598 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-22 03:49:06] 2024-05-22 01:44:02,598 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-22 03:49:06] 2024-05-22 01:44:02,599 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-22 03:49:06] 2024-05-22 01:44:02,599 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-22 03:49:06] 2024-05-22 01:44:02,599 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-22 03:49:06] 2024-05-22 01:44:02,599 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-22 03:49:06] 2024-05-22 01:44:02,599 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-22 03:49:06] 2024-05-22 01:44:02,599 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-22 03:49:06] 2024-05-22 01:44:02,599 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-22 03:49:06] 2024-05-22 01:44:02,599 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-22 03:49:06] 2024-05-22 01:44:02,599 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-22 03:49:06] 2024-05-22 01:44:02,599 | INFO     | job 6208730947 has completed (purged errors)
[2024-05-22 03:49:06] 2024-05-22 01:44:02,599 | INFO     | overall cleanup function is called
[2024-05-22 03:49:06] 2024-05-22 01:44:03,606 | INFO     | --- collectZombieJob: --- 10, [3702986]
[2024-05-22 03:49:06] 2024-05-22 01:44:03,606 | INFO     | zombie collector waiting for pid 3702986
[2024-05-22 03:49:06] 2024-05-22 01:44:03,606 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-22 03:49:06] 2024-05-22 01:44:04,611 | INFO     | collected zombie processes
[2024-05-22 03:49:06] 2024-05-22 01:44:04,612 | INFO     | will now attempt to kill all subprocesses of pid=3702986
[2024-05-22 03:49:06] 2024-05-22 01:44:04,816 | INFO     | process IDs to be killed: [3702986] (in reverse order)
[2024-05-22 03:49:06] 2024-05-22 01:44:04,926 | WARNING  | found no corresponding commands to process id(s)
[2024-05-22 03:49:06] 2024-05-22 01:44:04,926 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-22 03:49:06] 2024-05-22 01:44:04,935 | INFO     | did not find any defunct processes belonging to 3702986
[2024-05-22 03:49:06] 2024-05-22 01:44:04,943 | INFO     | did not find any defunct processes belonging to 3702986
[2024-05-22 03:49:06] 2024-05-22 01:44:04,943 | INFO     | ready for new job
[2024-05-22 03:49:06] 2024-05-22 01:44:04,943 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-22 03:49:06] 2024-05-22 01:44:04,944 | INFO     | *************************************
[2024-05-22 03:49:06] 2024-05-22 01:44:04,945 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-22 03:49:06] 2024-05-22 01:44:04,945 | INFO     | *************************************
[2024-05-22 03:49:06] 2024-05-22 01:44:04,945 | INFO     | 
[2024-05-22 03:49:06] 2024-05-22 01:44:04,948 | INFO     | architecture information:
[2024-05-22 03:49:06] 2024-05-22 01:44:04,948 | INFO     | executing command: cat /etc/os-release
[2024-05-22 03:49:06] 2024-05-22 01:44:04,964 | INFO     | cat /etc/os-release:
[2024-05-22 03:49:06] NAME="CentOS Linux"
[2024-05-22 03:49:06] VERSION="7 (Core)"
[2024-05-22 03:49:06] ID="centos"
[2024-05-22 03:49:06] ID_LIKE="rhel fedora"
[2024-05-22 03:49:06] VERSION_ID="7"
[2024-05-22 03:49:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-22 03:49:06] ANSI_COLOR="0;31"
[2024-05-22 03:49:06] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-22 03:49:06] HOME_URL="https://www.centos.org/"
[2024-05-22 03:49:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-22 03:49:06] 
[2024-05-22 03:49:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-22 03:49:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-22 03:49:06] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-22 03:49:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-22 03:49:06] 
[2024-05-22 03:49:06] 2024-05-22 01:44:04,965 | INFO     | *************************************
[2024-05-22 03:49:06] 2024-05-22 01:44:05,468 | INFO     | executing command: df -mP /scratch/boinc/var/slot60/slots/0
[2024-05-22 03:49:06] 2024-05-22 01:44:05,486 | INFO     | sufficient remaining disk space (571792687104 B)
[2024-05-22 03:49:06] 2024-05-22 01:44:05,486 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-22 03:49:06] 2024-05-22 01:44:05,486 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-22 03:49:06] 2024-05-22 01:44:05,524 | INFO     | all job control threads have been joined
[2024-05-22 03:49:06] 2024-05-22 01:44:05,675 | INFO     | found 0 job(s) in 20 queues
[2024-05-22 03:49:06] 2024-05-22 01:44:05,675 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-22 03:49:06] 2024-05-22 01:44:05,675 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-22 03:49:06] 2024-05-22 01:44:05,889 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-22 03:49:06] 2024-05-22 01:44:05,889 | INFO     | aborting loop
[2024-05-22 03:49:06] 2024-05-22 01:44:06,301 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-22 03:49:06] 2024-05-22 01:44:06,491 | INFO     | [job] retrieve thread has finished
[2024-05-22 03:49:06] 2024-05-22 01:44:06,529 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-22 03:49:06] 2024-05-22 01:44:06,529 | INFO     | [job] control thread has finished
[2024-05-22 03:49:06] 2024-05-22 01:44:06,581 | INFO     | all data control threads have been joined
[2024-05-22 03:49:06] 2024-05-22 01:44:06,586 | INFO     | [job] validate thread has finished
[2024-05-22 03:49:06] 2024-05-22 01:44:06,593 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-22 03:49:06] 2024-05-22 01:44:06,615 | INFO     | [payload] validate_post thread has finished
[2024-05-22 03:49:06] 2024-05-22 01:44:06,821 | INFO     | [job] create_data_payload thread has finished
[2024-05-22 03:49:06] 2024-05-22 01:44:06,869 | INFO     | [payload] validate_pre thread has finished
[2024-05-22 03:49:06] 2024-05-22 01:44:06,894 | INFO     | [job] job monitor thread has finished
[2024-05-22 03:49:06] 2024-05-22 01:44:06,938 | INFO     | [payload] failed_post thread has finished
[2024-05-22 03:49:06] 2024-05-22 01:44:06,961 | INFO     | all payload control threads have been joined
[2024-05-22 03:49:06] 2024-05-22 01:44:07,088 | INFO     | [data] copytool_in thread has finished
[2024-05-22 03:49:06] 2024-05-22 01:44:07,275 | INFO     | [payload] execute_payloads thread has finished
[2024-05-22 03:49:06] 2024-05-22 01:44:07,284 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-22 03:49:06] 2024-05-22 01:44:07,586 | INFO     | [data] control thread has finished
[2024-05-22 03:49:06] 2024-05-22 01:44:07,962 | INFO     | [payload] control thread has finished
[2024-05-22 03:49:06] 2024-05-22 01:44:08,287 | INFO     | [job] queue monitor thread has finished
[2024-05-22 03:49:06] 2024-05-22 01:44:08,599 | INFO     | [data] copytool_out thread has finished
[2024-05-22 03:49:06] 2024-05-22 01:44:10,306 | INFO     | [data] queue_monitor thread has finished
[2024-05-22 03:49:06] 2024-05-22 01:44:10,693 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47116157183040)>', '<ExcThread(monitor, started 47116739163904)>']
[2024-05-22 03:49:06] 2024-05-22 01:44:10,698 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-22 03:49:06] 2024-05-22 01:44:10,698 | INFO     | [monitor] control thread has ended
[2024-05-22 03:49:06] 2024-05-22 01:44:15,718 | INFO     | all workflow threads have been joined
[2024-05-22 03:49:06] 2024-05-22 01:44:15,718 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-22 03:49:06] 2024-05-22 01:44:15,718 | INFO     | traces error code: 0
[2024-05-22 03:49:06] 2024-05-22 01:44:15,718 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-22 03:49:06] 2024-05-22 01:44:15,801 [wrapper] ==== pilot stdout END ====
[2024-05-22 03:49:06] 2024-05-22 01:44:15,803 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-22 03:49:06] 2024-05-22 01:44:15,805 [wrapper] pilotpid: 3695667
[2024-05-22 03:49:06] 2024-05-22 01:44:15,807 [wrapper] Pilot exit status: 0
[2024-05-22 03:49:06] 2024-05-22 01:44:15,815 [wrapper] pandaids: 6208730947
[2024-05-22 03:49:06] 2024-05-22 01:44:15,894 [wrapper] cleanup: SIGTERM to supervisor_pilot 3886280 3695668
[2024-05-22 03:49:06] 2024-05-22 01:44:15,896 [wrapper] Test setup, not cleaning
[2024-05-22 03:49:06] 2024-05-22 01:44:15,898 [wrapper] ==== wrapper stdout END ====
[2024-05-22 03:49:06] 2024-05-22 01:44:15,900 [wrapper] ==== wrapper stderr END ====
[2024-05-22 03:49:06] 2024-05-22 01:44:15,904 [wrapper] apfmon messages muted
[2024-05-22 03:49:06]  *** Error codes and diagnostics ***
[2024-05-22 03:49:06]     "exeErrorCode": 0,
[2024-05-22 03:49:06]     "exeErrorDiag": "",
[2024-05-22 03:49:06]     "pilotErrorCode": 0,
[2024-05-22 03:49:06]     "pilotErrorDiag": "",
[2024-05-22 03:49:06]  *** Listing of results directory ***
[2024-05-22 03:49:06] total 821888
[2024-05-22 03:49:06] -rw-r--r-- 1 boinc boinc    467845 May 18 14:46 pilot3.tar.gz
[2024-05-22 03:49:06] -rw-r--r-- 1 boinc boinc      5633 May 18 14:57 queuedata.json
[2024-05-22 03:49:06] -rwx------ 1 boinc boinc     32251 May 18 14:57 runpilot2-wrapper.sh
[2024-05-22 03:49:06] -rw-r--r-- 1 boinc boinc       100 May 22 01:29 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-22 03:49:06] -rwxr-xr-x 1 boinc boinc      7986 May 22 01:29 run_atlas
[2024-05-22 03:49:06] -rw-r--r-- 1 boinc boinc       105 May 22 01:29 job.xml
[2024-05-22 03:49:06] -rw-r--r-- 1 boinc boinc      6663 May 22 01:29 init_data.xml
[2024-05-22 03:49:06] -rw-r--r-- 2 boinc boinc 599742419 May 22 01:29 EVNT.38776100._000564.pool.root.1
[2024-05-22 03:49:06] -rw-r--r-- 2 boinc boinc     17537 May 22 01:29 start_atlas.sh
[2024-05-22 03:49:06] drwxrwx--x 2 boinc boinc      4096 May 22 01:29 shared
[2024-05-22 03:49:06] -rw-r--r-- 2 boinc boinc    480008 May 22 01:29 input.tar.gz
[2024-05-22 03:49:06] -rw-r--r-- 1 boinc boinc         0 May 22 01:29 boinc_lockfile
[2024-05-22 03:49:06] -rw-r--r-- 1 boinc boinc      2644 May 22 01:29 pandaJob.out
[2024-05-22 03:49:06] -rw------- 1 boinc boinc       424 May 22 01:29 setup.sh.local
[2024-05-22 03:49:06] -rw------- 1 boinc boinc   1013899 May 22 01:29 agis_schedconf.cvmfs.json
[2024-05-22 03:49:06] -rw------- 1 boinc boinc         0 May 22 01:29 agis_ddmendpoints.agis.ALL.json
[2024-05-22 03:49:06] -rw------- 1 boinc boinc   1324700 May 22 01:29 cric_ddmendpoints.json
[2024-05-22 03:49:06] drwx------ 4 boinc boinc      4096 May 22 01:29 pilot3
[2024-05-22 03:49:06] -rw------- 1 boinc boinc        95 May 22 03:43 pilot_heartbeat.json
[2024-05-22 03:49:06] -rw------- 1 boinc boinc 236141548 May 22 03:43 HITS.38776104._017514.pool.root.1
[2024-05-22 03:49:06] -rw-r--r-- 1 boinc boinc       528 May 22 03:43 boinc_task_state.xml
[2024-05-22 03:49:06] -rw------- 1 boinc boinc      1049 May 22 03:43 memory_monitor_summary.json
[2024-05-22 03:49:06] -rw------- 1 boinc boinc    270491 May 22 03:43 log.38776104._017514.job.log.tgz.1
[2024-05-22 03:49:06] -rw------- 1 boinc boinc      7771 May 22 03:44 heartbeat.json
[2024-05-22 03:49:06] -rw------- 1 boinc boinc      4221 May 22 03:44 pilotlog.txt
[2024-05-22 03:49:06] -rw------- 1 boinc boinc    830292 May 22 03:44 log.38776104._017514.job.log.1
[2024-05-22 03:49:06] -rw------- 1 boinc boinc       357 May 22 03:44 output.list
[2024-05-22 03:49:06] -rw-r--r-- 1 boinc boinc       620 May 22 03:44 runtime_log
[2024-05-22 03:49:06] -rw------- 1 boinc boinc   1116160 May 22 03:44 result.tar.gz
[2024-05-22 03:49:06] -rw-r--r-- 1 boinc boinc     11409 May 22 03:44 runtime_log.err
[2024-05-22 03:49:06] -rw------- 1 boinc boinc       654 May 22 03:44 394KDmIoYS5nsSi4apGgGQJmABFKDmABFKDm4ySLDm9cSKDmEvMZWo.diag
[2024-05-22 03:49:06] -rw-r--r-- 1 boinc boinc        26 May 22 03:49 wrapper_checkpoint.txt
[2024-05-22 03:49:06] -rw-r--r-- 1 boinc boinc      8192 May 22 03:49 boinc_mmap_file
[2024-05-22 03:49:06] -rw-r--r-- 1 boinc boinc     21293 May 22 03:49 stderr.txt
[2024-05-22 03:49:06] HITS file was successfully produced:
[2024-05-22 03:49:06] -rw------- 1 boinc boinc 236141548 May 22 03:43 shared/HITS.pool.root.1
[2024-05-22 03:49:06]  *** Contents of shared directory: ***
[2024-05-22 03:49:06] total 817888
[2024-05-22 03:49:06] -rw-r--r-- 2 boinc boinc 599742419 May 22 01:29 ATLAS.root_0
[2024-05-22 03:49:06] -rw-r--r-- 2 boinc boinc     17537 May 22 01:29 start_atlas.sh
[2024-05-22 03:49:06] -rw-r--r-- 2 boinc boinc    480008 May 22 01:29 input.tar.gz
[2024-05-22 03:49:06] -rw------- 1 boinc boinc 236141548 May 22 03:43 HITS.pool.root.1
[2024-05-22 03:49:06] -rw------- 1 boinc boinc   1116160 May 22 03:44 result.tar.gz
03:49:07 (3691332): run_atlas exited; CPU time 29041.889756
03:49:07 (3691332): called boinc_finish(0)

</stderr_txt>
]]>

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