Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:13:16 (1624288): wrapper (7.7.26015): starting
16:13:16 (1624288): wrapper: running run_atlas (--nthreads 4)
[2024-05-24 16:13:16] Arguments: --nthreads 4
[2024-05-24 16:13:16] Threads: 4
[2024-05-24 16:13:16] Checking for CVMFS
[2024-05-24 16:13:16] No cvmfs_config command found, will try listing directly
[2024-05-24 16:13:16] CVMFS is ok
[2024-05-24 16:13:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-24 16:13:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-24 16:13:16] Further information can be found at the LHC@home message board.
[2024-05-24 16:13:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-24 16:13:16] Checking for apptainer binary...
[2024-05-24 16:13:16] which: no apptainer in ((null))
[2024-05-24 16:13:16] apptainer is not installed, using version from CVMFS
[2024-05-24 16:13:16] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-24 16:13:16] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot68/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2024-05-24 16:13:16] apptainer works
[2024-05-24 16:13:17] Set ATHENA_PROC_NUMBER=4
[2024-05-24 16:13:17] Set ATHENA_CORE_NUMBER=4
[2024-05-24 16:13:17] Starting ATLAS job with PandaID=6208728410
[2024-05-24 16:13:17] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot68/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-24 18:51:29]  *** The last 200 lines of the pilot log: ***
[2024-05-24 18:51:29] 2024-05-24 16:50:00,244 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-24 18:51:29] 2024-05-24 16:50:00,248 | INFO     | fitting pss+swap vs Time
[2024-05-24 18:51:29] 2024-05-24 16:50:00,248 | INFO     | model: linear, x: [1716560031.0, 1716560092.0, 1716560153.0, 1716560214.0, 1716560275.0, 1716560336.0, 1716560397.0, 1716560458.0, 1716560519.0, 1716560580.0, 1716
[2024-05-24 18:51:29] 2024-05-24 16:50:00,249 | INFO     | sum of square deviations: 1132458442.5
[2024-05-24 18:51:29] 2024-05-24 16:50:00,250 | INFO     | sum of deviations: 47483138435.5
[2024-05-24 18:51:29] 2024-05-24 16:50:00,250 | INFO     | mean x: 1716564697.5
[2024-05-24 18:51:29] 2024-05-24 16:50:00,250 | INFO     | mean y: 2251592.8766233767
[2024-05-24 18:51:29] 2024-05-24 16:50:00,250 | INFO     | -- intersect: -71972026761.16963
[2024-05-24 18:51:29] 2024-05-24 16:50:00,250 | INFO     | intersect: -71972026761.16963
[2024-05-24 18:51:29] 2024-05-24 16:50:00,250 | INFO     | chi2: 4.890399707391609
[2024-05-24 18:51:29] 2024-05-24 16:50:00,251 | INFO     | model: linear, x: [1716560031.0, 1716560092.0, 1716560153.0, 1716560214.0, 1716560275.0, 1716560336.0, 1716560397.0, 1716560458.0, 1716560519.0, 1716560580.0, 1716
[2024-05-24 18:51:29] 2024-05-24 16:50:00,251 | INFO     | sum of square deviations: 1025693650.0
[2024-05-24 18:51:29] 2024-05-24 16:50:00,252 | INFO     | sum of deviations: 55558704351.99999
[2024-05-24 18:51:29] 2024-05-24 16:50:00,252 | INFO     | mean x: 1716564545.0
[2024-05-24 18:51:29] 2024-05-24 16:50:00,252 | INFO     | mean y: 2262759.154362416
[2024-05-24 18:51:29] 2024-05-24 16:50:00,252 | INFO     | -- intersect: -92978816003.28157
[2024-05-24 18:51:29] 2024-05-24 16:50:00,252 | INFO     | intersect: -92978816003.28157
[2024-05-24 18:51:29] 2024-05-24 16:50:00,253 | INFO     | chi2: 4.093910835060334
[2024-05-24 18:51:29] 2024-05-24 16:50:00,253 | INFO     | current chi2=4.093910835060334 (change=16.286784720836202 %)
[2024-05-24 18:51:29] 2024-05-24 16:50:00,253 | INFO     | right removable region: 148
[2024-05-24 18:51:29] 2024-05-24 16:50:00,253 | INFO     | model: linear, x: [1716560336.0, 1716560397.0, 1716560458.0, 1716560519.0, 1716560580.0, 1716560641.0, 1716560702.0, 1716560763.0, 1716560824.0, 1716560885.0, 1716
[2024-05-24 18:51:29] 2024-05-24 16:50:00,253 | INFO     | sum of square deviations: 1025693650.0
[2024-05-24 18:51:29] 2024-05-24 16:50:00,254 | INFO     | sum of deviations: 13481750544.000004
[2024-05-24 18:51:29] 2024-05-24 16:50:00,254 | INFO     | mean x: 1716564850.0
[2024-05-24 18:51:29] 2024-05-24 16:50:00,255 | INFO     | mean y: 2299991.651006711
[2024-05-24 18:51:29] 2024-05-24 16:50:00,255 | INFO     | -- intersect: -22560283973.1603
[2024-05-24 18:51:29] 2024-05-24 16:50:00,255 | INFO     | intersect: -22560283973.1603
[2024-05-24 18:51:29] 2024-05-24 16:50:00,255 | INFO     | chi2: 2.4576681761639687
[2024-05-24 18:51:29] 2024-05-24 16:50:00,255 | INFO     | current chi2=2.4576681761639687 (change=49.745044920370844 %)
[2024-05-24 18:51:29] 2024-05-24 16:50:00,255 | INFO     | model: linear, x: [1716560641.0, 1716560702.0, 1716560763.0, 1716560824.0, 1716560885.0, 1716560946.0, 1716561007.0, 1716561068.0, 1716561129.0, 1716561190.0, 1716
[2024-05-24 18:51:29] 2024-05-24 16:50:00,256 | INFO     | sum of square deviations: 925859220.0
[2024-05-24 18:51:29] 2024-05-24 16:50:00,257 | INFO     | sum of deviations: -14695587043.0
[2024-05-24 18:51:29] 2024-05-24 16:50:00,257 | INFO     | mean x: 1716565002.5
[2024-05-24 18:51:29] 2024-05-24 16:50:00,257 | INFO     | mean y: 2343044.277777778
[2024-05-24 18:51:29] 2024-05-24 16:50:00,257 | INFO     | -- intersect: 27248310751.124466
[2024-05-24 18:51:29] 2024-05-24 16:50:00,257 | INFO     | intersect: 27248310751.124466
[2024-05-24 18:51:29] 2024-05-24 16:50:00,257 | INFO     | chi2: 0.9222373219614578
[2024-05-24 18:51:29] 2024-05-24 16:50:00,257 | INFO     | current chi2=0.9222373219614578 (change=62.4751082792257 %)
[2024-05-24 18:51:29] 2024-05-24 16:50:00,258 | INFO     | model: linear, x: [1716560946.0, 1716561007.0, 1716561068.0, 1716561129.0, 1716561190.0, 1716561251.0, 1716561312.0, 1716561373.0, 1716561434.0, 1716561495.0, 1716
[2024-05-24 18:51:29] 2024-05-24 16:50:00,258 | INFO     | sum of square deviations: 832722590.0
[2024-05-24 18:51:29] 2024-05-24 16:50:00,259 | INFO     | sum of deviations: -17363248132.0
[2024-05-24 18:51:29] 2024-05-24 16:50:00,259 | INFO     | mean x: 1716565155.0
[2024-05-24 18:51:29] 2024-05-24 16:50:00,259 | INFO     | mean y: 2347297.928057554
[2024-05-24 18:51:29] 2024-05-24 16:50:00,259 | INFO     | -- intersect: 35794755332.64948
[2024-05-24 18:51:29] 2024-05-24 16:50:00,259 | INFO     | intersect: 35794755332.64948
[2024-05-24 18:51:29] 2024-05-24 16:50:00,259 | INFO     | chi2: 0.8667084566331442
[2024-05-24 18:51:29] 2024-05-24 16:50:00,260 | INFO     | current chi2=0.8667084566331442 (change=6.02110367971361 %)
[2024-05-24 18:51:29] 2024-05-24 16:50:00,260 | INFO     | left removable region: 30
[2024-05-24 18:51:29] 2024-05-24 16:50:00,260 | INFO     | model: linear, x: [1716561861.0, 1716561922.0, 1716561983.0, 1716562044.0, 1716562105.0, 1716562166.0, 1716562227.0, 1716562288.0, 1716562349.0, 1716562410.0, 1716
[2024-05-24 18:51:29] 2024-05-24 16:50:00,260 | INFO     | sum of square deviations: 509440249.5
[2024-05-24 18:51:29] 2024-05-24 16:50:00,261 | INFO     | sum of deviations: -4841089320.000001
[2024-05-24 18:51:29] 2024-05-24 16:50:00,261 | INFO     | mean x: 1716565429.5
[2024-05-24 18:51:29] 2024-05-24 16:50:00,261 | INFO     | mean y: 2356666.1016949154
[2024-05-24 18:51:29] 2024-05-24 16:50:00,261 | INFO     | -- intersect: 16314468981.510069
[2024-05-24 18:51:29] 2024-05-24 16:50:00,261 | INFO     | intersect: 16314468981.510069
[2024-05-24 18:51:29] 2024-05-24 16:50:00,262 | INFO     | chi2: 0.013947620338427604
[2024-05-24 18:51:29] 2024-05-24 16:50:00,262 | INFO     | -- intersect: 16314468981.510069
[2024-05-24 18:51:29] 2024-05-24 16:50:00,262 | INFO     | current memory leak: -9.50 B/s (using 118 data points, chi2=0.01)
[2024-05-24 18:51:29] 2024-05-24 16:50:00,262 | INFO     | ..............................
[2024-05-24 18:51:29] 2024-05-24 16:50:00,263 | INFO     | . Timing measurements:
[2024-05-24 18:51:29] 2024-05-24 16:50:00,263 | INFO     | . get job = 0 s
[2024-05-24 18:51:29] 2024-05-24 16:50:00,263 | INFO     | . initial setup = 1 s
[2024-05-24 18:51:29] 2024-05-24 16:50:00,263 | INFO     | . payload setup = 5 s
[2024-05-24 18:51:29] 2024-05-24 16:50:00,263 | INFO     | . stage-in = 0 s
[2024-05-24 18:51:29] 2024-05-24 16:50:00,263 | INFO     | . payload execution = 9356 s
[2024-05-24 18:51:29] 2024-05-24 16:50:00,263 | INFO     | . stage-out = 0 s
[2024-05-24 18:51:29] 2024-05-24 16:50:00,263 | INFO     | . log creation = 0 s
[2024-05-24 18:51:29] 2024-05-24 16:50:00,263 | INFO     | ..............................
[2024-05-24 18:51:29] 2024-05-24 16:50:00,380 | INFO     | 
[2024-05-24 18:51:29] 2024-05-24 16:50:00,380 | INFO     | job summary report
[2024-05-24 18:51:29] 2024-05-24 16:50:00,380 | INFO     | --------------------------------------------------
[2024-05-24 18:51:29] 2024-05-24 16:50:00,380 | INFO     | PanDA job id: 6208728410
[2024-05-24 18:51:29] 2024-05-24 16:50:00,380 | INFO     | task id: 38776104
[2024-05-24 18:51:29] 2024-05-24 16:50:00,380 | INFO     | errors: (none)
[2024-05-24 18:51:29] 2024-05-24 16:50:00,380 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-24 18:51:29] 2024-05-24 16:50:00,381 | INFO     | pilot state: finished 
[2024-05-24 18:51:29] 2024-05-24 16:50:00,381 | INFO     | transexitcode: 0
[2024-05-24 18:51:29] 2024-05-24 16:50:00,381 | INFO     | exeerrorcode: 0
[2024-05-24 18:51:29] 2024-05-24 16:50:00,381 | INFO     | exeerrordiag: 
[2024-05-24 18:51:29] 2024-05-24 16:50:00,381 | INFO     | exitcode: 0
[2024-05-24 18:51:29] 2024-05-24 16:50:00,381 | INFO     | exitmsg: OK
[2024-05-24 18:51:29] 2024-05-24 16:50:00,381 | INFO     | cpuconsumptiontime: 34779 s
[2024-05-24 18:51:29] 2024-05-24 16:50:00,381 | INFO     | nevents: 400
[2024-05-24 18:51:29] 2024-05-24 16:50:00,381 | INFO     | neventsw: 0
[2024-05-24 18:51:29] 2024-05-24 16:50:00,381 | INFO     | pid: 1636596
[2024-05-24 18:51:29] 2024-05-24 16:50:00,381 | INFO     | pgrp: 1636596
[2024-05-24 18:51:29] 2024-05-24 16:50:00,381 | INFO     | corecount: 4
[2024-05-24 18:51:29] 2024-05-24 16:50:00,382 | INFO     | event service: False
[2024-05-24 18:51:29] 2024-05-24 16:50:00,382 | INFO     | sizes: {0: 2378746, 5: 2378952, 11: 2379008, 9365: 2407319, 9367: 2416357, 9379: 2416471}
[2024-05-24 18:51:29] 2024-05-24 16:50:00,382 | INFO     | --------------------------------------------------
[2024-05-24 18:51:29] 2024-05-24 16:50:00,382 | INFO     | 
[2024-05-24 18:51:29] 2024-05-24 16:50:00,382 | INFO     | executing command: ls -lF /scratch/boinc/var/slot68/slots/0
[2024-05-24 18:51:29] 2024-05-24 16:50:00,404 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-24 18:51:29] 2024-05-24 16:50:00,404 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-24 18:51:29] 2024-05-24 16:50:00,404 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-24 18:51:29] 2024-05-24 16:50:00,404 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-24 18:51:29] 2024-05-24 16:50:00,404 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-24 18:51:29] 2024-05-24 16:50:00,404 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-24 18:51:29] 2024-05-24 16:50:00,405 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-24 18:51:29] 2024-05-24 16:50:00,405 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-24 18:51:29] 2024-05-24 16:50:00,405 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-24 18:51:29] 2024-05-24 16:50:00,405 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-24 18:51:29] 2024-05-24 16:50:00,405 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-24 18:51:29] 2024-05-24 16:50:00,405 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-24 18:51:29] 2024-05-24 16:50:00,405 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-24 18:51:29] 2024-05-24 16:50:00,405 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-24 18:51:29] 2024-05-24 16:50:00,405 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-24 18:51:29] 2024-05-24 16:50:00,405 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-24 18:51:29] 2024-05-24 16:50:00,405 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-24 18:51:29] 2024-05-24 16:50:00,406 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-24 18:51:29] 2024-05-24 16:50:00,406 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-24 18:51:29] 2024-05-24 16:50:00,406 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-24 18:51:29] 2024-05-24 16:50:00,406 | INFO     | job 6208728410 has completed (purged errors)
[2024-05-24 18:51:29] 2024-05-24 16:50:00,406 | INFO     | overall cleanup function is called
[2024-05-24 18:51:29] 2024-05-24 16:50:01,414 | INFO     | --- collectZombieJob: --- 10, [1636596]
[2024-05-24 18:51:29] 2024-05-24 16:50:01,414 | INFO     | zombie collector waiting for pid 1636596
[2024-05-24 18:51:29] 2024-05-24 16:50:01,414 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-24 18:51:29] 2024-05-24 16:50:02,419 | INFO     | collected zombie processes
[2024-05-24 18:51:29] 2024-05-24 16:50:02,419 | INFO     | will now attempt to kill all subprocesses of pid=1636596
[2024-05-24 18:51:29] 2024-05-24 16:50:02,685 | INFO     | process IDs to be killed: [1636596] (in reverse order)
[2024-05-24 18:51:29] 2024-05-24 16:50:02,874 | WARNING  | found no corresponding commands to process id(s)
[2024-05-24 18:51:29] 2024-05-24 16:50:02,874 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-24 18:51:29] 2024-05-24 16:50:02,895 | INFO     | did not find any defunct processes belonging to 1636596
[2024-05-24 18:51:29] 2024-05-24 16:50:02,914 | INFO     | did not find any defunct processes belonging to 1636596
[2024-05-24 18:51:29] 2024-05-24 16:50:02,914 | INFO     | ready for new job
[2024-05-24 18:51:29] 2024-05-24 16:50:02,914 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-24 18:51:29] 2024-05-24 16:50:02,916 | INFO     | *************************************
[2024-05-24 18:51:29] 2024-05-24 16:50:02,916 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-24 18:51:29] 2024-05-24 16:50:02,916 | INFO     | *************************************
[2024-05-24 18:51:29] 2024-05-24 16:50:02,917 | INFO     | 
[2024-05-24 18:51:29] 2024-05-24 16:50:02,923 | INFO     | architecture information:
[2024-05-24 18:51:29] 2024-05-24 16:50:02,924 | INFO     | executing command: cat /etc/os-release
[2024-05-24 18:51:29] 2024-05-24 16:50:02,937 | INFO     | cat /etc/os-release:
[2024-05-24 18:51:29] NAME="CentOS Linux"
[2024-05-24 18:51:29] VERSION="7 (Core)"
[2024-05-24 18:51:29] ID="centos"
[2024-05-24 18:51:29] ID_LIKE="rhel fedora"
[2024-05-24 18:51:29] VERSION_ID="7"
[2024-05-24 18:51:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-24 18:51:29] ANSI_COLOR="0;31"
[2024-05-24 18:51:29] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-24 18:51:29] HOME_URL="https://www.centos.org/"
[2024-05-24 18:51:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-24 18:51:29] 
[2024-05-24 18:51:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-24 18:51:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-24 18:51:29] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-24 18:51:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-24 18:51:29] 
[2024-05-24 18:51:29] 2024-05-24 16:50:02,938 | INFO     | *************************************
[2024-05-24 18:51:29] 2024-05-24 16:50:03,440 | INFO     | executing command: df -mP /scratch/boinc/var/slot68/slots/0
[2024-05-24 18:51:29] 2024-05-24 16:50:03,463 | INFO     | sufficient remaining disk space (3098529497088 B)
[2024-05-24 18:51:29] 2024-05-24 16:50:03,464 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-24 18:51:29] 2024-05-24 16:50:03,464 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-24 18:51:29] 2024-05-24 16:50:03,464 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-24 18:51:29] 2024-05-24 16:50:03,464 | INFO     | found 0 job(s) in 20 queues
[2024-05-24 18:51:29] 2024-05-24 16:50:03,465 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-24 18:51:29] 2024-05-24 16:50:03,465 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-24 18:51:29] 2024-05-24 16:50:03,599 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-24 18:51:29] 2024-05-24 16:50:03,702 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-24 18:51:29] 2024-05-24 16:50:03,702 | INFO     | aborting loop
[2024-05-24 18:51:29] 2024-05-24 16:50:03,757 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-24 18:51:29] 2024-05-24 16:50:04,138 | INFO     | all payload control threads have been joined
[2024-05-24 18:51:29] 2024-05-24 16:50:04,192 | INFO     | all job control threads have been joined
[2024-05-24 18:51:29] 2024-05-24 16:50:04,341 | INFO     | all data control threads have been joined
[2024-05-24 18:51:29] 2024-05-24 16:50:04,469 | INFO     | [job] retrieve thread has finished
[2024-05-24 18:51:29] 2024-05-24 16:50:04,707 | INFO     | [job] job monitor thread has finished
[2024-05-24 18:51:29] 2024-05-24 16:50:04,828 | INFO     | [data] copytool_in thread has finished
[2024-05-24 18:51:29] 2024-05-24 16:50:04,904 | INFO     | [job] validate thread has finished
[2024-05-24 18:51:29] 2024-05-24 16:50:04,934 | INFO     | [payload] validate_post thread has finished
[2024-05-24 18:51:29] 2024-05-24 16:50:05,024 | INFO     | [payload] failed_post thread has finished
[2024-05-24 18:51:29] 2024-05-24 16:50:05,044 | INFO     | [payload] validate_pre thread has finished
[2024-05-24 18:51:29] 2024-05-24 16:50:05,143 | INFO     | [payload] control thread has finished
[2024-05-24 18:51:29] 2024-05-24 16:50:05,192 | INFO     | [job] create_data_payload thread has finished
[2024-05-24 18:51:29] 2024-05-24 16:50:05,197 | INFO     | [job] control thread has finished
[2024-05-24 18:51:29] 2024-05-24 16:50:05,236 | INFO     | [payload] execute_payloads thread has finished
[2024-05-24 18:51:29] 2024-05-24 16:50:05,346 | INFO     | [data] control thread has finished
[2024-05-24 18:51:29] 2024-05-24 16:50:05,389 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-24 18:51:29] 2024-05-24 16:50:05,762 | INFO     | [data] copytool_out thread has finished
[2024-05-24 18:51:29] 2024-05-24 16:50:06,394 | INFO     | [job] queue monitor thread has finished
[2024-05-24 18:51:29] 2024-05-24 16:50:07,605 | INFO     | [data] queue_monitor thread has finished
[2024-05-24 18:51:29] 2024-05-24 16:50:14,484 | INFO     | job.realtimelogging is not enabled
[2024-05-24 18:51:29] 2024-05-24 16:50:15,489 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-24 18:51:29] 2024-05-24 16:50:17,210 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47125820154944)>', '<ExcThread(monitor, started 47126396536576)>']
[2024-05-24 18:51:29] 2024-05-24 16:50:17,541 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-24 18:51:29] 2024-05-24 16:50:17,541 | INFO     | [monitor] control thread has ended
[2024-05-24 18:51:29] 2024-05-24 16:50:22,235 | INFO     | all workflow threads have been joined
[2024-05-24 18:51:29] 2024-05-24 16:50:22,236 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-24 18:51:29] 2024-05-24 16:50:22,236 | INFO     | traces error code: 0
[2024-05-24 18:51:29] 2024-05-24 16:50:22,236 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-24 18:51:29] 2024-05-24 16:50:22,324 [wrapper] ==== pilot stdout END ====
[2024-05-24 18:51:29] 2024-05-24 16:50:22,346 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-24 18:51:29] 2024-05-24 16:50:22,368 [wrapper] pilotpid: 1629028
[2024-05-24 18:51:29] 2024-05-24 16:50:22,392 [wrapper] Pilot exit status: 0
[2024-05-24 18:51:29] 2024-05-24 16:50:22,419 [wrapper] pandaids: 6208728410
[2024-05-24 18:51:29] 2024-05-24 16:50:22,560 [wrapper] cleanup: SIGTERM to supervisor_pilot 2822152 1629029
[2024-05-24 18:51:29] 2024-05-24 16:50:22,562 [wrapper] Test setup, not cleaning
[2024-05-24 18:51:29] 2024-05-24 16:50:22,565 [wrapper] ==== wrapper stdout END ====
[2024-05-24 18:51:29] 2024-05-24 16:50:22,568 [wrapper] ==== wrapper stderr END ====
[2024-05-24 18:51:29] 2024-05-24 16:50:22,573 [wrapper] apfmon messages muted
[2024-05-24 18:51:29]  *** Error codes and diagnostics ***
[2024-05-24 18:51:29]     "exeErrorCode": 0,
[2024-05-24 18:51:29]     "exeErrorDiag": "",
[2024-05-24 18:51:29]     "pilotErrorCode": 0,
[2024-05-24 18:51:29]     "pilotErrorDiag": "",
[2024-05-24 18:51:29]  *** Listing of results directory ***
[2024-05-24 18:51:29] total 1535820
[2024-05-24 18:51:29] -rw-r--r-- 1 boinc boinc    467845 May 18 13:46 pilot3.tar.gz
[2024-05-24 18:51:29] -rw-r--r-- 1 boinc boinc      5633 May 18 14:11 queuedata.json
[2024-05-24 18:51:29] -rwx------ 1 boinc boinc     32251 May 18 14:12 runpilot2-wrapper.sh
[2024-05-24 18:51:29] -rw-r--r-- 1 boinc boinc       100 May 24 08:45 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-24 18:51:29] -rwxr-xr-x 1 boinc boinc      7986 May 24 08:45 run_atlas
[2024-05-24 18:51:29] -rw-r--r-- 1 boinc boinc       105 May 24 08:45 job.xml
[2024-05-24 18:51:29] -rw------- 2 boinc boinc 537722880 May 24 09:25 copy_cz1RhI
[2024-05-24 18:51:29] -rw------- 2 boinc boinc 189923328 May 24 12:55 copy_mFJWkU
[2024-05-24 18:51:29] -rw-r--r-- 2 boinc boinc 603515443 May 24 16:13 EVNT.38776100._000552.pool.root.1
[2024-05-24 18:51:29] -rw-r--r-- 1 boinc boinc      6643 May 24 16:13 init_data.xml
[2024-05-24 18:51:29] -rw-r--r-- 2 boinc boinc    480004 May 24 16:13 input.tar.gz
[2024-05-24 18:51:29] drwxrwx--x 2 boinc boinc      4096 May 24 16:13 shared
[2024-05-24 18:51:29] -rw-r--r-- 2 boinc boinc     17537 May 24 16:13 start_atlas.sh
[2024-05-24 18:51:29] -rw-r--r-- 1 boinc boinc         0 May 24 16:13 boinc_lockfile
[2024-05-24 18:51:29] -rw-r--r-- 1 boinc boinc      2645 May 24 16:13 pandaJob.out
[2024-05-24 18:51:29] -rw------- 1 boinc boinc       424 May 24 16:13 setup.sh.local
[2024-05-24 18:51:29] -rw------- 1 boinc boinc   1009518 May 24 16:13 agis_schedconf.cvmfs.json
[2024-05-24 18:51:29] -rw------- 1 boinc boinc         0 May 24 16:13 agis_ddmendpoints.agis.ALL.json
[2024-05-24 18:51:29] -rw------- 1 boinc boinc   1317222 May 24 16:13 cric_ddmendpoints.json
[2024-05-24 18:51:29] drwx------ 4 boinc boinc      4096 May 24 16:13 pilot3
[2024-05-24 18:51:29] -rw------- 1 boinc boinc 235468571 May 24 18:49 HITS.38776104._017220.pool.root.1
[2024-05-24 18:51:29] -rw-r--r-- 1 boinc boinc       530 May 24 18:49 boinc_task_state.xml
[2024-05-24 18:51:29] -rw------- 1 boinc boinc      1044 May 24 18:49 memory_monitor_summary.json
[2024-05-24 18:51:29] -rw------- 1 boinc boinc    298108 May 24 18:49 log.38776104._017220.job.log.tgz.1
[2024-05-24 18:51:29] -rw------- 1 boinc boinc        95 May 24 18:49 pilot_heartbeat.json
[2024-05-24 18:51:29] -rw------- 1 boinc boinc      7727 May 24 18:50 heartbeat.json
[2024-05-24 18:51:29] -rw------- 1 boinc boinc      4417 May 24 18:50 pilotlog.txt
[2024-05-24 18:51:29] -rw------- 1 boinc boinc    965386 May 24 18:50 log.38776104._017220.job.log.1
[2024-05-24 18:51:29] -rw------- 1 boinc boinc       357 May 24 18:50 output.list
[2024-05-24 18:51:29] -rw-r--r-- 1 boinc boinc       620 May 24 18:50 runtime_log
[2024-05-24 18:51:29] -rw------- 1 boinc boinc   1280000 May 24 18:50 result.tar.gz
[2024-05-24 18:51:29] -rw-r--r-- 1 boinc boinc     11409 May 24 18:50 runtime_log.err
[2024-05-24 18:51:29] -rw------- 1 boinc boinc       657 May 24 18:50 cDdKDmJ6XS5nsSi4apGgGQJmABFKDmABFKDm4ySLDmEaSKDmntUVRn.diag
[2024-05-24 18:51:29] -rw-r--r-- 1 boinc boinc        27 May 24 18:51 wrapper_checkpoint.txt
[2024-05-24 18:51:29] -rw-r--r-- 1 boinc boinc      8192 May 24 18:51 boinc_mmap_file
[2024-05-24 18:51:29] -rw-r--r-- 1 boinc boinc     21295 May 24 18:51 stderr.txt
[2024-05-24 18:51:29] HITS file was successfully produced:
[2024-05-24 18:51:29] -rw------- 1 boinc boinc 235468571 May 24 18:49 shared/HITS.pool.root.1
[2024-05-24 18:51:29]  *** Contents of shared directory: ***
[2024-05-24 18:51:29] total 1531676
[2024-05-24 18:51:29] -rw------- 2 boinc boinc 537722880 May 24 09:25 copy_cz1RhI
[2024-05-24 18:51:29] -rw------- 2 boinc boinc 189923328 May 24 12:55 copy_mFJWkU
[2024-05-24 18:51:29] -rw-r--r-- 2 boinc boinc 603515443 May 24 16:13 ATLAS.root_0
[2024-05-24 18:51:29] -rw-r--r-- 2 boinc boinc    480004 May 24 16:13 input.tar.gz
[2024-05-24 18:51:29] -rw-r--r-- 2 boinc boinc     17537 May 24 16:13 start_atlas.sh
[2024-05-24 18:51:29] -rw------- 1 boinc boinc 235468571 May 24 18:49 HITS.pool.root.1
[2024-05-24 18:51:29] -rw------- 1 boinc boinc   1280000 May 24 18:50 result.tar.gz
18:51:30 (1624288): run_atlas exited; CPU time 34541.466251
18:51:30 (1624288): called boinc_finish(0)

</stderr_txt>
]]>

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