Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
13:46:33 (108228): wrapper (7.7.26015): starting
13:46:33 (108228): wrapper: running run_atlas (--nthreads 12)
[2024-05-18 13:46:33] Arguments: --nthreads 12
[2024-05-18 13:46:33] Threads: 12
[2024-05-18 13:46:33] Checking for CVMFS
[2024-05-18 13:46:33] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-18 13:46:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-18 13:46:33] Running cvmfs_config stat atlas.cern.ch
[2024-05-18 13:46:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-18 13:46:33] 2.10.1.0 2812 174159 183212 132889 2 256 30949087 45568001 11596 130560 0 1090229683 99.751 691026305 18254 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2024-05-18 13:46:33] CVMFS is ok
[2024-05-18 13:46:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-18 13:46:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-18 13:46:33] Further information can be found at the LHC@home message board.
[2024-05-18 13:46:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-18 13:46:33] Checking for apptainer binary...
[2024-05-18 13:46:33] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-18 13:46:33] Running /usr/bin/apptainer --version
[2024-05-18 13:46:34] apptainer version 1.1.8-1.el7
[2024-05-18 13:46:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-18 13:46:35] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0073.triumf.lcg
[2024-05-18 13:46:35] apptainer works
[2024-05-18 13:46:35] Set ATHENA_PROC_NUMBER=12
[2024-05-18 13:46:35] Set ATHENA_CORE_NUMBER=12
[2024-05-18 13:46:35] Starting ATLAS job with PandaID=6208719182
[2024-05-18 13:46:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-18 15:17:14]  *** The last 200 lines of the pilot log: ***
[2024-05-18 15:17:14]  filetype=log
[2024-05-18 15:17:14]  guid=b84f18ea-a7f4-41da-9586-a455af95b260
[2024-05-18 15:17:14]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-18 15:17:14]  is_tar=False
[2024-05-18 15:17:14]  lfn=log.38920982._003834.job.log.tgz.1
[2024-05-18 15:17:14]  mtime=0
[2024-05-18 15:17:14]  protocol_id=None
[2024-05-18 15:17:14]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-18 15:17:14]  replicas=None
[2024-05-18 15:17:14]  scope=mc23_13p6TeV
[2024-05-18 15:17:14]  status=None
[2024-05-18 15:17:14]  status_code=0
[2024-05-18 15:17:14]  storage_token=
[2024-05-18 15:17:14]  surl=/home/boinc/slots/0/PanDA_Pilot-6208719182/log.38920982._003834.job.log.tgz.1
[2024-05-18 15:17:14]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a1/ea/log.38920982._003834.job.log.tgz.1
[2024-05-18 15:17:14]  workdir=None
[2024-05-18 15:17:14] ]
[2024-05-18 15:17:14] 2024-05-18 22:16:46,026 | INFO     | transferring file log.38920982._003834.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6208719182/log.38920982._003834.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-05-18 15:17:14] 2024-05-18 22:16:46,026 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6208719182/log.38920982._003834.job.log.tgz.1 /home/boinc/slots/0/log.38920982._003834.job.log.t
[2024-05-18 15:17:14] 2024-05-18 22:16:46,050 | INFO     | adding to output.list: log.38920982._003834.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a1/ea/log.38920982._003834.job.log.tg
[2024-05-18 15:17:14] 2024-05-18 22:16:46,051 | INFO     | summary of transferred files:
[2024-05-18 15:17:14] 2024-05-18 22:16:46,051 | INFO     |  -- lfn=log.38920982._003834.job.log.tgz.1, status_code=0, status=transferred
[2024-05-18 15:17:14] 2024-05-18 22:16:46,051 | INFO     | stage-out finished correctly
[2024-05-18 15:17:14] 2024-05-18 22:16:46,098 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-18 15:17:14] 2024-05-18 22:16:47,979 | INFO     | monitor loop #424: job 0:6208719182 is in state 'finished'
[2024-05-18 15:17:14] 2024-05-18 22:16:47,980 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 15:17:14] 2024-05-18 22:16:48,958 | INFO     | job 6208719182 has state=finished
[2024-05-18 15:17:14] 2024-05-18 22:16:48,958 | INFO     | preparing for final server update for job 6208719182 in state='finished'
[2024-05-18 15:17:14] 2024-05-18 22:16:48,959 | INFO     | this job has now completed (state=finished)
[2024-05-18 15:17:14] 2024-05-18 22:16:48,959 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-18 15:17:14] 2024-05-18 22:16:48,959 | INFO     | job 6208719182 has finished - writing final server update
[2024-05-18 15:17:14] 2024-05-18 22:16:48,959 | INFO     | total number of processed events: 400 (read)
[2024-05-18 15:17:14] 2024-05-18 22:16:48,966 | INFO     | executing command: lscpu
[2024-05-18 15:17:14] 2024-05-18 22:16:49,029 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-18 15:17:14] 2024-05-18 22:16:49,029 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-18 15:17:14] 2024-05-18 22:16:49,085 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-18 15:17:14] 2024-05-18 22:16:50,483 | INFO     | monitor loop #425: job 0:6208719182 is in state 'finished'
[2024-05-18 15:17:14] 2024-05-18 22:16:50,483 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 15:17:14] 2024-05-18 22:16:52,356 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-18 15:17:14] 2024-05-18 22:16:52,356 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6208719182/memory_monitor_summary.json (trf name=prmon)
[2024-05-18 15:17:14] 2024-05-18 22:16:52,358 | INFO     | extracted standard info from prmon json
[2024-05-18 15:17:14] 2024-05-18 22:16:52,358 | INFO     | extracted standard memory fields from prmon json
[2024-05-18 15:17:14] 2024-05-18 22:16:52,358 | WARNING  | GPU info not found in prmon json
[2024-05-18 15:17:14] 2024-05-18 22:16:52,358 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-18 15:17:14] 2024-05-18 22:16:52,358 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-18 15:17:14] 2024-05-18 22:16:52,361 | INFO     | fitting pss+swap vs Time
[2024-05-18 15:17:14] 2024-05-18 22:16:52,361 | INFO     | model: linear, x: [1716065532.0, 1716065593.0, 1716065654.0, 1716065715.0, 1716065776.0, 1716065837.0, 1716065898.0, 1716065959.0, 1716066020.0, 1716066081.0, 1716
[2024-05-18 15:17:14] 2024-05-18 22:16:52,361 | INFO     | sum of square deviations: 170944600.5
[2024-05-18 15:17:14] 2024-05-18 22:16:52,362 | INFO     | sum of deviations: 24488287801.0
[2024-05-18 15:17:14] 2024-05-18 22:16:52,362 | INFO     | mean x: 1716068002.5
[2024-05-18 15:17:14] 2024-05-18 22:16:52,362 | INFO     | mean y: 2643905.0
[2024-05-18 15:17:14] 2024-05-18 22:16:52,362 | INFO     | -- intersect: -245828853599.98953
[2024-05-18 15:17:14] 2024-05-18 22:16:52,362 | INFO     | intersect: -245828853599.98953
[2024-05-18 15:17:14] 2024-05-18 22:16:52,362 | INFO     | chi2: 2.2765157965212848
[2024-05-18 15:17:14] 2024-05-18 22:16:52,362 | INFO     | -- intersect: -245828853599.98953
[2024-05-18 15:17:14] 2024-05-18 22:16:52,363 | INFO     | current memory leak: 143.25 B/s (using 82 data points, chi2=2.28)
[2024-05-18 15:17:14] 2024-05-18 22:16:52,363 | INFO     | ..............................
[2024-05-18 15:17:14] 2024-05-18 22:16:52,363 | INFO     | . Timing measurements:
[2024-05-18 15:17:14] 2024-05-18 22:16:52,363 | INFO     | . get job = 0 s
[2024-05-18 15:17:14] 2024-05-18 22:16:52,363 | INFO     | . initial setup = 2 s
[2024-05-18 15:17:14] 2024-05-18 22:16:52,363 | INFO     | . payload setup = 4 s
[2024-05-18 15:17:14] 2024-05-18 22:16:52,363 | INFO     | . stage-in = 0 s
[2024-05-18 15:17:14] 2024-05-18 22:16:52,363 | INFO     | . payload execution = 5377 s
[2024-05-18 15:17:14] 2024-05-18 22:16:52,364 | INFO     | . stage-out = 0 s
[2024-05-18 15:17:14] 2024-05-18 22:16:52,364 | INFO     | . log creation = 0 s
[2024-05-18 15:17:14] 2024-05-18 22:16:52,364 | INFO     | ..............................
[2024-05-18 15:17:14] 2024-05-18 22:16:52,445 | INFO     | 
[2024-05-18 15:17:14] 2024-05-18 22:16:52,445 | INFO     | job summary report
[2024-05-18 15:17:14] 2024-05-18 22:16:52,445 | INFO     | --------------------------------------------------
[2024-05-18 15:17:14] 2024-05-18 22:16:52,445 | INFO     | PanDA job id: 6208719182
[2024-05-18 15:17:14] 2024-05-18 22:16:52,445 | INFO     | task id: 38920982
[2024-05-18 15:17:14] 2024-05-18 22:16:52,445 | INFO     | errors: (none)
[2024-05-18 15:17:14] 2024-05-18 22:16:52,445 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-18 15:17:14] 2024-05-18 22:16:52,445 | INFO     | pilot state: finished 
[2024-05-18 15:17:14] 2024-05-18 22:16:52,445 | INFO     | transexitcode: 0
[2024-05-18 15:17:14] 2024-05-18 22:16:52,445 | INFO     | exeerrorcode: 0
[2024-05-18 15:17:14] 2024-05-18 22:16:52,445 | INFO     | exeerrordiag: 
[2024-05-18 15:17:14] 2024-05-18 22:16:52,445 | INFO     | exitcode: 0
[2024-05-18 15:17:14] 2024-05-18 22:16:52,446 | INFO     | exitmsg: OK
[2024-05-18 15:17:14] 2024-05-18 22:16:52,446 | INFO     | cpuconsumptiontime: 52368 s
[2024-05-18 15:17:14] 2024-05-18 22:16:52,446 | INFO     | nevents: 400
[2024-05-18 15:17:14] 2024-05-18 22:16:52,446 | INFO     | neventsw: 0
[2024-05-18 15:17:14] 2024-05-18 22:16:52,446 | INFO     | pid: 118952
[2024-05-18 15:17:14] 2024-05-18 22:16:52,446 | INFO     | pgrp: 118952
[2024-05-18 15:17:14] 2024-05-18 22:16:52,446 | INFO     | corecount: 12
[2024-05-18 15:17:14] 2024-05-18 22:16:52,446 | INFO     | event service: False
[2024-05-18 15:17:14] 2024-05-18 22:16:52,446 | INFO     | sizes: {0: 2392182, 4: 2392388, 11: 2392416, 5386: 2418917, 5387: 2427927, 5394: 2428041}
[2024-05-18 15:17:14] 2024-05-18 22:16:52,446 | INFO     | --------------------------------------------------
[2024-05-18 15:17:14] 2024-05-18 22:16:52,446 | INFO     | 
[2024-05-18 15:17:14] 2024-05-18 22:16:52,446 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-18 15:17:14] 2024-05-18 22:16:52,466 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-18 15:17:14] 2024-05-18 22:16:52,466 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-18 15:17:14] 2024-05-18 22:16:52,466 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-18 15:17:14] 2024-05-18 22:16:52,466 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-18 15:17:14] 2024-05-18 22:16:52,466 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-18 15:17:14] 2024-05-18 22:16:52,466 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-18 15:17:14] 2024-05-18 22:16:52,467 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-18 15:17:14] 2024-05-18 22:16:52,467 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-18 15:17:14] 2024-05-18 22:16:52,467 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-18 15:17:14] 2024-05-18 22:16:52,467 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-18 15:17:14] 2024-05-18 22:16:52,467 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-18 15:17:14] 2024-05-18 22:16:52,467 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-18 15:17:14] 2024-05-18 22:16:52,467 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-18 15:17:14] 2024-05-18 22:16:52,467 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-18 15:17:14] 2024-05-18 22:16:52,467 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-18 15:17:14] 2024-05-18 22:16:52,467 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-18 15:17:14] 2024-05-18 22:16:52,467 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-18 15:17:14] 2024-05-18 22:16:52,467 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-18 15:17:14] 2024-05-18 22:16:52,467 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-18 15:17:14] 2024-05-18 22:16:52,467 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-18 15:17:14] 2024-05-18 22:16:52,467 | INFO     | job 6208719182 has completed (purged errors)
[2024-05-18 15:17:14] 2024-05-18 22:16:52,467 | INFO     | overall cleanup function is called
[2024-05-18 15:17:14] 2024-05-18 22:16:53,477 | INFO     | --- collectZombieJob: --- 10, [118952]
[2024-05-18 15:17:14] 2024-05-18 22:16:53,478 | INFO     | zombie collector waiting for pid 118952
[2024-05-18 15:17:14] 2024-05-18 22:16:53,478 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-18 15:17:14] 2024-05-18 22:16:54,482 | INFO     | collected zombie processes
[2024-05-18 15:17:14] 2024-05-18 22:16:54,483 | INFO     | will now attempt to kill all subprocesses of pid=118952
[2024-05-18 15:17:14] 2024-05-18 22:16:54,628 | INFO     | process IDs to be killed: [118952] (in reverse order)
[2024-05-18 15:17:14] 2024-05-18 22:16:54,727 | WARNING  | found no corresponding commands to process id(s)
[2024-05-18 15:17:14] 2024-05-18 22:16:54,728 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-18 15:17:14] 2024-05-18 22:16:54,738 | INFO     | did not find any defunct processes belonging to 118952
[2024-05-18 15:17:14] 2024-05-18 22:16:54,747 | INFO     | did not find any defunct processes belonging to 118952
[2024-05-18 15:17:14] 2024-05-18 22:16:54,747 | INFO     | ready for new job
[2024-05-18 15:17:14] 2024-05-18 22:16:54,747 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-18 15:17:14] 2024-05-18 22:16:54,749 | INFO     | *************************************
[2024-05-18 15:17:14] 2024-05-18 22:16:54,749 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-18 15:17:14] 2024-05-18 22:16:54,750 | INFO     | *************************************
[2024-05-18 15:17:14] 2024-05-18 22:16:54,750 | INFO     | 
[2024-05-18 15:17:14] 2024-05-18 22:16:54,754 | INFO     | architecture information:
[2024-05-18 15:17:14] 2024-05-18 22:16:54,754 | INFO     | executing command: cat /etc/os-release
[2024-05-18 15:17:14] 2024-05-18 22:16:54,775 | INFO     | cat /etc/os-release:
[2024-05-18 15:17:14] NAME="CentOS Linux"
[2024-05-18 15:17:14] VERSION="7 (Core)"
[2024-05-18 15:17:14] ID="centos"
[2024-05-18 15:17:14] ID_LIKE="rhel fedora"
[2024-05-18 15:17:14] VERSION_ID="7"
[2024-05-18 15:17:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-18 15:17:14] ANSI_COLOR="0;31"
[2024-05-18 15:17:14] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-18 15:17:14] HOME_URL="https://www.centos.org/"
[2024-05-18 15:17:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-18 15:17:14] 
[2024-05-18 15:17:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-18 15:17:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-18 15:17:14] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-18 15:17:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-18 15:17:14] 
[2024-05-18 15:17:14] 2024-05-18 22:16:54,776 | INFO     | *************************************
[2024-05-18 15:17:14] 2024-05-18 22:16:55,278 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-18 15:17:14] 2024-05-18 22:16:55,295 | INFO     | sufficient remaining disk space (1888379469824 B)
[2024-05-18 15:17:14] 2024-05-18 22:16:55,295 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-18 15:17:14] 2024-05-18 22:16:55,295 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-18 15:17:14] 2024-05-18 22:16:55,295 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-18 15:17:14] 2024-05-18 22:16:55,296 | INFO     | found 0 job(s) in 20 queues
[2024-05-18 15:17:14] 2024-05-18 22:16:55,296 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-18 15:17:14] 2024-05-18 22:16:55,296 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-18 15:17:14] 2024-05-18 22:16:55,339 | INFO     | all payload control threads have been joined
[2024-05-18 15:17:14] 2024-05-18 22:16:55,492 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2024-05-18 15:17:14] 2024-05-18 22:16:55,493 | WARNING  | cannot recover job monitoring - aborting pilot
[2024-05-18 15:17:14] 2024-05-18 22:16:55,493 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-18 15:17:14] 2024-05-18 22:16:55,493 | INFO     | will abort loop
[2024-05-18 15:17:14] 2024-05-18 22:16:56,050 | INFO     | all data control threads have been joined
[2024-05-18 15:17:14] 2024-05-18 22:16:56,300 | INFO     | [job] retrieve thread has finished
[2024-05-18 15:17:14] 2024-05-18 22:16:56,343 | INFO     | [payload] control thread has finished
[2024-05-18 15:17:14] 2024-05-18 22:16:56,480 | INFO     | [job] create_data_payload thread has finished
[2024-05-18 15:17:14] 2024-05-18 22:16:56,497 | INFO     | [job] job monitor thread has finished
[2024-05-18 15:17:14] 2024-05-18 22:16:56,526 | INFO     | [payload] validate_pre thread has finished
[2024-05-18 15:17:14] 2024-05-18 22:16:56,611 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-18 15:17:14] 2024-05-18 22:16:56,676 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-18 15:17:14] 2024-05-18 22:16:56,685 | INFO     | [payload] validate_post thread has finished
[2024-05-18 15:17:14] 2024-05-18 22:16:56,833 | INFO     | all job control threads have been joined
[2024-05-18 15:17:14] 2024-05-18 22:16:57,055 | INFO     | [data] control thread has finished
[2024-05-18 15:17:14] 2024-05-18 22:16:57,205 | INFO     | [data] copytool_in thread has finished
[2024-05-18 15:17:14] 2024-05-18 22:16:57,222 | INFO     | [payload] failed_post thread has finished
[2024-05-18 15:17:14] 2024-05-18 22:16:57,453 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-18 15:17:14] 2024-05-18 22:16:57,461 | INFO     | [payload] execute_payloads thread has finished
[2024-05-18 15:17:14] 2024-05-18 22:16:57,501 | INFO     | [job] validate thread has finished
[2024-05-18 15:17:14] 2024-05-18 22:16:57,839 | INFO     | [job] control thread has finished
[2024-05-18 15:17:14] 2024-05-18 22:16:58,456 | INFO     | [job] queue monitor thread has finished
[2024-05-18 15:17:14] 2024-05-18 22:16:58,617 | INFO     | [data] copytool_out thread has finished
[2024-05-18 15:17:14] 2024-05-18 22:17:00,682 | INFO     | [data] queue_monitor thread has finished
[2024-05-18 15:17:14] 2024-05-18 22:17:05,401 | INFO     | job.realtimelogging is not enabled
[2024-05-18 15:17:14] 2024-05-18 22:17:06,406 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-18 15:17:14] 2024-05-18 22:17:08,469 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140574518384448)>', '<ExcThread(monitor, started 140574237632256)>']
[2024-05-18 15:17:14] 2024-05-18 22:17:09,355 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-18 15:17:14] 2024-05-18 22:17:09,355 | INFO     | [monitor] control thread has ended
[2024-05-18 15:17:14] 2024-05-18 22:17:13,495 | INFO     | all workflow threads have been joined
[2024-05-18 15:17:14] 2024-05-18 22:17:13,496 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-18 15:17:14] 2024-05-18 22:17:13,496 | INFO     | traces error code: 0
[2024-05-18 15:17:14] 2024-05-18 22:17:13,496 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-18 15:17:14] 2024-05-18 22:17:13,612 [wrapper] ==== pilot stdout END ====
[2024-05-18 15:17:14] 2024-05-18 22:17:13,615 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-18 15:17:14] 2024-05-18 22:17:13,617 [wrapper] pilotpid: 112429
[2024-05-18 15:17:14] 2024-05-18 22:17:13,619 [wrapper] Pilot exit status: 0
[2024-05-18 15:17:14] 2024-05-18 22:17:13,628 [wrapper] pandaids: 6208719182
[2024-05-18 15:17:14] 2024-05-18 22:17:13,680 [wrapper] cleanup: SIGTERM to supervisor_pilot  20712 112430
[2024-05-18 15:17:14] 2024-05-18 22:17:13,682 [wrapper] Test setup, not cleaning
[2024-05-18 15:17:14] 2024-05-18 22:17:13,684 [wrapper] ==== wrapper stdout END ====
[2024-05-18 15:17:14] 2024-05-18 22:17:13,686 [wrapper] ==== wrapper stderr END ====
[2024-05-18 15:17:14] 2024-05-18 22:17:13,690 [wrapper] apfmon messages muted
[2024-05-18 15:17:14]  *** Error codes and diagnostics ***
[2024-05-18 15:17:14]     "exeErrorCode": 0,
[2024-05-18 15:17:14]     "exeErrorDiag": "",
[2024-05-18 15:17:14]     "pilotErrorCode": 0,
[2024-05-18 15:17:14]     "pilotErrorDiag": "",
[2024-05-18 15:17:14]  *** Listing of results directory ***
[2024-05-18 15:17:14] total 917840
[2024-05-18 15:17:14] -rw-r--r-- 1 boinc boinc    467845 May 18 04:34 pilot3.tar.gz
[2024-05-18 15:17:14] -rw-r--r-- 1 boinc boinc      5633 May 18 04:40 queuedata.json
[2024-05-18 15:17:14] -rwx------ 1 boinc boinc     32251 May 18 04:40 runpilot2-wrapper.sh
[2024-05-18 15:17:14] -rw-r--r-- 1 boinc boinc       100 May 18 13:46 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-18 15:17:14] -rwxr-xr-x 1 boinc boinc      7986 May 18 13:46 run_atlas
[2024-05-18 15:17:14] -rw-r--r-- 1 boinc boinc       105 May 18 13:46 job.xml
[2024-05-18 15:17:14] -rw-r--r-- 1 boinc boinc      6626 May 18 13:46 init_data.xml
[2024-05-18 15:17:14] -rw-r--r-- 2 boinc boinc 630465958 May 18 13:46 EVNT.38776160._000115.pool.root.1
[2024-05-18 15:17:14] -rw-r--r-- 2 boinc boinc    480008 May 18 13:46 input.tar.gz
[2024-05-18 15:17:14] -rw-r--r-- 2 boinc boinc     17537 May 18 13:46 start_atlas.sh
[2024-05-18 15:17:14] drwxrwx--x 2 boinc boinc      4096 May 18 13:46 shared
[2024-05-18 15:17:14] -rw-r--r-- 1 boinc boinc         0 May 18 13:46 boinc_lockfile
[2024-05-18 15:17:14] -rw-r--r-- 1 boinc boinc      2625 May 18 13:46 pandaJob.out
[2024-05-18 15:17:14] -rw------- 1 boinc boinc       424 May 18 13:46 setup.sh.local
[2024-05-18 15:17:14] -rw------- 1 boinc boinc   1019075 May 18 13:46 agis_schedconf.cvmfs.json
[2024-05-18 15:17:14] -rw------- 1 boinc boinc         0 May 18 13:46 agis_ddmendpoints.agis.ALL.json
[2024-05-18 15:17:14] -rw------- 1 boinc boinc   1324701 May 18 13:46 cric_ddmendpoints.json
[2024-05-18 15:17:14] drwx------ 4 boinc boinc      4096 May 18 13:46 pilot3
[2024-05-18 15:17:14] -rw------- 1 boinc boinc        95 May 18 15:15 pilot_heartbeat.json
[2024-05-18 15:17:14] -rw------- 1 boinc boinc 304102623 May 18 15:16 HITS.38920982._003834.pool.root.1
[2024-05-18 15:17:14] -rw-r--r-- 1 boinc boinc       530 May 18 15:16 boinc_task_state.xml
[2024-05-18 15:17:14] -rw------- 1 boinc boinc      1050 May 18 15:16 memory_monitor_summary.json
[2024-05-18 15:17:14] -rw------- 1 boinc boinc    358715 May 18 15:16 log.38920982._003834.job.log.tgz.1
[2024-05-18 15:17:14] -rw------- 1 boinc boinc      7763 May 18 15:16 heartbeat.json
[2024-05-18 15:17:14] -rw-r--r-- 1 boinc boinc        27 May 18 15:17 wrapper_checkpoint.txt
[2024-05-18 15:17:14] -rw-r--r-- 1 boinc boinc      8192 May 18 15:17 boinc_mmap_file
[2024-05-18 15:17:14] -rw------- 1 boinc boinc      4591 May 18 15:17 pilotlog.txt
[2024-05-18 15:17:14] -rw------- 1 boinc boinc    526675 May 18 15:17 log.38920982._003834.job.log.1
[2024-05-18 15:17:14] -rw------- 1 boinc boinc       357 May 18 15:17 output.list
[2024-05-18 15:17:14] -rw-r--r-- 1 boinc boinc       620 May 18 15:17 runtime_log
[2024-05-18 15:17:14] -rw------- 1 boinc boinc    901120 May 18 15:17 result.tar.gz
[2024-05-18 15:17:14] -rw------- 1 boinc boinc       652 May 18 15:17 WzsMDmfbXS5n7Olcko1bjSoqABFKDmABFKDmOtvXDm1CaKDmOwaccn.diag
[2024-05-18 15:17:14] -rw-r--r-- 1 boinc boinc     11286 May 18 15:17 runtime_log.err
[2024-05-18 15:17:14] -rw-r--r-- 1 boinc boinc     21667 May 18 15:17 stderr.txt
[2024-05-18 15:17:14] HITS file was successfully produced:
[2024-05-18 15:17:14] -rw------- 1 boinc boinc 304102623 May 18 15:16 shared/HITS.pool.root.1
[2024-05-18 15:17:14]  *** Contents of shared directory: ***
[2024-05-18 15:17:14] total 914048
[2024-05-18 15:17:14] -rw-r--r-- 2 boinc boinc 630465958 May 18 13:46 ATLAS.root_0
[2024-05-18 15:17:14] -rw-r--r-- 2 boinc boinc    480008 May 18 13:46 input.tar.gz
[2024-05-18 15:17:14] -rw-r--r-- 2 boinc boinc     17537 May 18 13:46 start_atlas.sh
[2024-05-18 15:17:14] -rw------- 1 boinc boinc 304102623 May 18 15:16 HITS.pool.root.1
[2024-05-18 15:17:14] -rw------- 1 boinc boinc    901120 May 18 15:17 result.tar.gz
15:17:16 (108228): run_atlas exited; CPU time 52189.749871
15:17:16 (108228): called boinc_finish(0)

</stderr_txt>
]]>

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