Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:11:24 (2454487): wrapper (7.7.26015): starting
08:11:24 (2454487): wrapper: running run_atlas (--nthreads 12)
[2024-05-20 08:11:24] Arguments: --nthreads 12
[2024-05-20 08:11:24] Threads: 12
[2024-05-20 08:11:24] Checking for CVMFS
[2024-05-20 08:11:24] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-20 08:11:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-20 08:11:24] Running cvmfs_config stat atlas.cern.ch
[2024-05-20 08:11:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-20 08:11:25] 2.11.3.0 11199 15623 108416 132939 0 56 44729223 46080000 867 130560 0 21565219 99.964 2347740 37915 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2024-05-20 08:11:25] CVMFS is ok
[2024-05-20 08:11:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-20 08:11:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-20 08:11:25] Further information can be found at the LHC@home message board.
[2024-05-20 08:11:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-20 08:11:25] Checking for apptainer binary...
[2024-05-20 08:11:25] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-20 08:11:25] Running /usr/bin/apptainer --version
[2024-05-20 08:11:25] apptainer version 1.3.1-1.el7
[2024-05-20 08:11:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-20 08:11:25] minis01.farm.particle.cz
[2024-05-20 08:11:25] apptainer works
[2024-05-20 08:11:25] Set ATHENA_PROC_NUMBER=12
[2024-05-20 08:11:25] Set ATHENA_CORE_NUMBER=12
[2024-05-20 08:11:25] Starting ATLAS job with PandaID=6208654462
[2024-05-20 08:11:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-20 09:43:08]  *** The last 200 lines of the pilot log: ***
[2024-05-20 09:43:08]  filesize=386885
[2024-05-20 09:43:08]  filetype=log
[2024-05-20 09:43:08]  guid=72bcccae-5dc1-48b2-a215-2bf60ad5f856
[2024-05-20 09:43:08]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-20 09:43:08]  is_tar=False
[2024-05-20 09:43:08]  lfn=log.38776146._016263.job.log.tgz.1
[2024-05-20 09:43:08]  mtime=0
[2024-05-20 09:43:08]  protocol_id=None
[2024-05-20 09:43:08]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-20 09:43:08]  replicas=None
[2024-05-20 09:43:08]  scope=mc23_13p6TeV
[2024-05-20 09:43:08]  status=None
[2024-05-20 09:43:08]  status_code=0
[2024-05-20 09:43:08]  storage_token=
[2024-05-20 09:43:08]  surl=/scratch/.boinc/slots/1/PanDA_Pilot-6208654462/log.38776146._016263.job.log.tgz.1
[2024-05-20 09:43:08]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/97/e8/log.38776146._016263.job.log.tgz.1
[2024-05-20 09:43:08]  workdir=None
[2024-05-20 09:43:08] ]
[2024-05-20 09:43:08] 2024-05-20 07:42:46,042 | INFO     | transferring file log.38776146._016263.job.log.tgz.1 from /scratch/.boinc/slots/1/PanDA_Pilot-6208654462/log.38776146._016263.job.log.tgz.1 to /scratch/.boinc/slot
[2024-05-20 09:43:08] 2024-05-20 07:42:46,042 | INFO     | executing command: /usr/bin/env mv /scratch/.boinc/slots/1/PanDA_Pilot-6208654462/log.38776146._016263.job.log.tgz.1 /scratch/.boinc/slots/1/log.38776146._016263.j
[2024-05-20 09:43:08] 2024-05-20 07:42:46,058 | INFO     | adding to output.list: log.38776146._016263.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/97/e8/log.38776146._016263.job.log.tg
[2024-05-20 09:43:08] 2024-05-20 07:42:46,059 | INFO     | summary of transferred files:
[2024-05-20 09:43:08] 2024-05-20 07:42:46,059 | INFO     |  -- lfn=log.38776146._016263.job.log.tgz.1, status_code=0, status=transferred
[2024-05-20 09:43:08] 2024-05-20 07:42:46,059 | INFO     | stage-out finished correctly
[2024-05-20 09:43:08] 2024-05-20 07:42:47,078 | INFO     | monitor loop #431: job 0:6208654462 is in state 'finished'
[2024-05-20 09:43:08] 2024-05-20 07:42:47,078 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-20 09:43:08] 2024-05-20 07:42:47,276 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-20 09:43:08] 2024-05-20 07:42:48,564 | INFO     | job 6208654462 has state=finished
[2024-05-20 09:43:08] 2024-05-20 07:42:48,564 | INFO     | preparing for final server update for job 6208654462 in state='finished'
[2024-05-20 09:43:08] 2024-05-20 07:42:48,564 | INFO     | this job has now completed (state=finished)
[2024-05-20 09:43:08] 2024-05-20 07:42:48,565 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-20 09:43:08] 2024-05-20 07:42:48,565 | INFO     | job 6208654462 has finished - writing final server update
[2024-05-20 09:43:08] 2024-05-20 07:42:48,565 | INFO     | total number of processed events: 400 (read)
[2024-05-20 09:43:08] 2024-05-20 07:42:48,567 | INFO     | executing command: lscpu
[2024-05-20 09:43:08] 2024-05-20 07:42:48,591 | INFO     | found 16 cores (16 cores per socket, 1 sockets)
[2024-05-20 09:43:08] 2024-05-20 07:42:48,591 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-20 09:43:08] 2024-05-20 07:42:48,619 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-20 09:43:08] 2024-05-20 07:42:49,581 | INFO     | monitor loop #432: job 0:6208654462 is in state 'finished'
[2024-05-20 09:43:08] 2024-05-20 07:42:49,581 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-20 09:43:08] 2024-05-20 07:42:52,085 | INFO     | monitor loop #433: job 0:6208654462 is in state 'finished'
[2024-05-20 09:43:08] 2024-05-20 07:42:52,085 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-20 09:43:08] 2024-05-20 07:42:52,833 | INFO     | CPU arch script returned: x86-64-v3
[2024-05-20 09:43:08] 2024-05-20 07:42:52,834 | INFO     | using path: /scratch/.boinc/slots/1/PanDA_Pilot-6208654462/memory_monitor_summary.json (trf name=prmon)
[2024-05-20 09:43:08] 2024-05-20 07:42:52,835 | INFO     | extracted standard info from prmon json
[2024-05-20 09:43:08] 2024-05-20 07:42:52,835 | INFO     | extracted standard memory fields from prmon json
[2024-05-20 09:43:08] 2024-05-20 07:42:52,835 | WARNING  | GPU info not found in prmon json
[2024-05-20 09:43:08] 2024-05-20 07:42:52,835 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-20 09:43:08] 2024-05-20 07:42:52,835 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-20 09:43:08] 2024-05-20 07:42:52,837 | INFO     | fitting pss+swap vs Time
[2024-05-20 09:43:08] 2024-05-20 07:42:52,837 | INFO     | model: linear, x: [1716185832.0, 1716185893.0, 1716185954.0, 1716186015.0, 1716186076.0, 1716186137.0, 1716186198.0, 1716186259.0, 1716186320.0, 1716186381.0, 1716
[2024-05-20 09:43:08] 2024-05-20 07:42:52,837 | INFO     | sum of square deviations: 177275882.0
[2024-05-20 09:43:08] 2024-05-20 07:42:52,837 | INFO     | sum of deviations: 25074758698.0
[2024-05-20 09:43:08] 2024-05-20 07:42:52,837 | INFO     | mean x: 1716188333.0
[2024-05-20 09:43:08] 2024-05-20 07:42:52,837 | INFO     | mean y: 2681110.421686747
[2024-05-20 09:43:08] 2024-05-20 07:42:52,837 | INFO     | -- intersect: -242743302408.6329
[2024-05-20 09:43:08] 2024-05-20 07:42:52,837 | INFO     | intersect: -242743302408.6329
[2024-05-20 09:43:08] 2024-05-20 07:42:52,837 | INFO     | chi2: 2.1875444615799506
[2024-05-20 09:43:08] 2024-05-20 07:42:52,838 | INFO     | -- intersect: -242743302408.6329
[2024-05-20 09:43:08] 2024-05-20 07:42:52,838 | INFO     | current memory leak: 141.44 B/s (using 83 data points, chi2=2.19)
[2024-05-20 09:43:08] 2024-05-20 07:42:52,838 | INFO     | ..............................
[2024-05-20 09:43:08] 2024-05-20 07:42:52,838 | INFO     | . Timing measurements:
[2024-05-20 09:43:08] 2024-05-20 07:42:52,838 | INFO     | . get job = 0 s
[2024-05-20 09:43:08] 2024-05-20 07:42:52,838 | INFO     | . initial setup = 1 s
[2024-05-20 09:43:08] 2024-05-20 07:42:52,838 | INFO     | . payload setup = 7 s
[2024-05-20 09:43:08] 2024-05-20 07:42:52,838 | INFO     | . stage-in = 0 s
[2024-05-20 09:43:08] 2024-05-20 07:42:52,838 | INFO     | . payload execution = 5438 s
[2024-05-20 09:43:08] 2024-05-20 07:42:52,838 | INFO     | . stage-out = 0 s
[2024-05-20 09:43:08] 2024-05-20 07:42:52,838 | INFO     | . log creation = 0 s
[2024-05-20 09:43:08] 2024-05-20 07:42:52,838 | INFO     | ..............................
[2024-05-20 09:43:08] 2024-05-20 07:42:52,911 | INFO     | 
[2024-05-20 09:43:08] 2024-05-20 07:42:52,912 | INFO     | job summary report
[2024-05-20 09:43:08] 2024-05-20 07:42:52,912 | INFO     | --------------------------------------------------
[2024-05-20 09:43:08] 2024-05-20 07:42:52,912 | INFO     | PanDA job id: 6208654462
[2024-05-20 09:43:08] 2024-05-20 07:42:52,912 | INFO     | task id: 38776146
[2024-05-20 09:43:08] 2024-05-20 07:42:52,912 | INFO     | errors: (none)
[2024-05-20 09:43:08] 2024-05-20 07:42:52,912 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-20 09:43:08] 2024-05-20 07:42:52,912 | INFO     | pilot state: finished 
[2024-05-20 09:43:08] 2024-05-20 07:42:52,912 | INFO     | transexitcode: 0
[2024-05-20 09:43:08] 2024-05-20 07:42:52,913 | INFO     | exeerrorcode: 0
[2024-05-20 09:43:08] 2024-05-20 07:42:52,913 | INFO     | exeerrordiag: 
[2024-05-20 09:43:08] 2024-05-20 07:42:52,913 | INFO     | exitcode: 0
[2024-05-20 09:43:08] 2024-05-20 07:42:52,913 | INFO     | exitmsg: OK
[2024-05-20 09:43:08] 2024-05-20 07:42:52,913 | INFO     | cpuconsumptiontime: 55154 s
[2024-05-20 09:43:08] 2024-05-20 07:42:52,913 | INFO     | nevents: 400
[2024-05-20 09:43:08] 2024-05-20 07:42:52,913 | INFO     | neventsw: 0
[2024-05-20 09:43:08] 2024-05-20 07:42:52,913 | INFO     | pid: 2465692
[2024-05-20 09:43:08] 2024-05-20 07:42:52,913 | INFO     | pgrp: 2465692
[2024-05-20 09:43:08] 2024-05-20 07:42:52,913 | INFO     | corecount: 12
[2024-05-20 09:43:08] 2024-05-20 07:42:52,914 | INFO     | event service: False
[2024-05-20 09:43:08] 2024-05-20 07:42:52,914 | INFO     | sizes: {0: 2392056, 1: 2392255, 6: 2392461, 11: 2392489, 5449: 2419035, 5451: 2427997, 5453: 2428181, 5458: 2428351}
[2024-05-20 09:43:08] 2024-05-20 07:42:52,914 | INFO     | --------------------------------------------------
[2024-05-20 09:43:08] 2024-05-20 07:42:52,914 | INFO     | 
[2024-05-20 09:43:08] 2024-05-20 07:42:52,914 | INFO     | executing command: ls -lF /scratch/.boinc/slots/1
[2024-05-20 09:43:08] 2024-05-20 07:42:52,931 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-20 09:43:08] 2024-05-20 07:42:52,931 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-20 09:43:08] 2024-05-20 07:42:52,931 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-20 09:43:08] 2024-05-20 07:42:52,931 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-20 09:43:08] 2024-05-20 07:42:52,932 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-20 09:43:08] 2024-05-20 07:42:52,932 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-20 09:43:08] 2024-05-20 07:42:52,932 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-20 09:43:08] 2024-05-20 07:42:52,932 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-20 09:43:08] 2024-05-20 07:42:52,932 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-20 09:43:08] 2024-05-20 07:42:52,932 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-20 09:43:08] 2024-05-20 07:42:52,932 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-20 09:43:08] 2024-05-20 07:42:52,932 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-20 09:43:08] 2024-05-20 07:42:52,932 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-20 09:43:08] 2024-05-20 07:42:52,933 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-20 09:43:08] 2024-05-20 07:42:52,933 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-20 09:43:08] 2024-05-20 07:42:52,933 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-20 09:43:08] 2024-05-20 07:42:52,933 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-20 09:43:08] 2024-05-20 07:42:52,933 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-20 09:43:08] 2024-05-20 07:42:52,933 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-20 09:43:08] 2024-05-20 07:42:52,933 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-20 09:43:08] 2024-05-20 07:42:52,933 | INFO     | job 6208654462 has completed (purged errors)
[2024-05-20 09:43:08] 2024-05-20 07:42:52,934 | INFO     | overall cleanup function is called
[2024-05-20 09:43:08] 2024-05-20 07:42:53,941 | INFO     | --- collectZombieJob: --- 10, [2465692]
[2024-05-20 09:43:08] 2024-05-20 07:42:53,942 | INFO     | zombie collector waiting for pid 2465692
[2024-05-20 09:43:08] 2024-05-20 07:42:53,943 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-20 09:43:08] 2024-05-20 07:42:54,948 | INFO     | collected zombie processes
[2024-05-20 09:43:08] 2024-05-20 07:42:54,948 | INFO     | will now attempt to kill all subprocesses of pid=2465692
[2024-05-20 09:43:08] 2024-05-20 07:42:55,066 | INFO     | process IDs to be killed: [2465692] (in reverse order)
[2024-05-20 09:43:08] 2024-05-20 07:42:55,163 | WARNING  | found no corresponding commands to process id(s)
[2024-05-20 09:43:08] 2024-05-20 07:42:55,163 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-20 09:43:08] 2024-05-20 07:42:55,169 | INFO     | did not find any defunct processes belonging to 2465692
[2024-05-20 09:43:08] 2024-05-20 07:42:55,175 | INFO     | did not find any defunct processes belonging to 2465692
[2024-05-20 09:43:08] 2024-05-20 07:42:55,175 | INFO     | ready for new job
[2024-05-20 09:43:08] 2024-05-20 07:42:55,175 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-20 09:43:08] 2024-05-20 07:42:55,176 | INFO     | *************************************
[2024-05-20 09:43:08] 2024-05-20 07:42:55,177 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-20 09:43:08] 2024-05-20 07:42:55,177 | INFO     | *************************************
[2024-05-20 09:43:08] 2024-05-20 07:42:55,177 | INFO     | 
[2024-05-20 09:43:08] 2024-05-20 07:42:55,178 | INFO     | architecture information:
[2024-05-20 09:43:08] 2024-05-20 07:42:55,179 | INFO     | executing command: cat /etc/os-release
[2024-05-20 09:43:08] 2024-05-20 07:42:55,196 | INFO     | cat /etc/os-release:
[2024-05-20 09:43:08] NAME="CentOS Linux"
[2024-05-20 09:43:08] VERSION="7 (Core)"
[2024-05-20 09:43:08] ID="centos"
[2024-05-20 09:43:08] ID_LIKE="rhel fedora"
[2024-05-20 09:43:08] VERSION_ID="7"
[2024-05-20 09:43:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-20 09:43:08] ANSI_COLOR="0;31"
[2024-05-20 09:43:08] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-20 09:43:08] HOME_URL="https://www.centos.org/"
[2024-05-20 09:43:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-20 09:43:08] 
[2024-05-20 09:43:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-20 09:43:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-20 09:43:08] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-20 09:43:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-20 09:43:08] 
[2024-05-20 09:43:08] 2024-05-20 07:42:55,197 | INFO     | *************************************
[2024-05-20 09:43:08] 2024-05-20 07:42:55,700 | INFO     | executing command: df -mP /scratch/.boinc/slots/1
[2024-05-20 09:43:08] 2024-05-20 07:42:55,716 | INFO     | sufficient remaining disk space (709834571776 B)
[2024-05-20 09:43:08] 2024-05-20 07:42:55,716 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-20 09:43:08] 2024-05-20 07:42:55,716 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-20 09:43:08] 2024-05-20 07:42:55,717 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-20 09:43:08] 2024-05-20 07:42:55,717 | INFO     | aborting loop
[2024-05-20 09:43:08] 2024-05-20 07:42:55,717 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-20 09:43:08] 2024-05-20 07:42:55,717 | INFO     | found 0 job(s) in 20 queues
[2024-05-20 09:43:08] 2024-05-20 07:42:55,717 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-20 09:43:08] 2024-05-20 07:42:55,717 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-20 09:43:08] 2024-05-20 07:42:56,230 | INFO     | all payload control threads have been joined
[2024-05-20 09:43:08] 2024-05-20 07:42:56,383 | INFO     | all data control threads have been joined
[2024-05-20 09:43:08] 2024-05-20 07:42:56,676 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-20 09:43:08] 2024-05-20 07:42:56,722 | INFO     | [job] retrieve thread has finished
[2024-05-20 09:43:08] 2024-05-20 07:42:56,722 | INFO     | [job] job monitor thread has finished
[2024-05-20 09:43:08] 2024-05-20 07:42:56,726 | INFO     | all job control threads have been joined
[2024-05-20 09:43:08] 2024-05-20 07:42:56,842 | INFO     | [job] create_data_payload thread has finished
[2024-05-20 09:43:08] 2024-05-20 07:42:56,963 | INFO     | [payload] validate_pre thread has finished
[2024-05-20 09:43:08] 2024-05-20 07:42:57,236 | INFO     | [payload] control thread has finished
[2024-05-20 09:43:08] 2024-05-20 07:42:57,310 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-20 09:43:08] 2024-05-20 07:42:57,349 | INFO     | [payload] failed_post thread has finished
[2024-05-20 09:43:08] 2024-05-20 07:42:57,389 | INFO     | [data] control thread has finished
[2024-05-20 09:43:08] 2024-05-20 07:42:57,732 | INFO     | [job] control thread has finished
[2024-05-20 09:43:08] 2024-05-20 07:42:57,824 | INFO     | [payload] validate_post thread has finished
[2024-05-20 09:43:08] 2024-05-20 07:42:57,895 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-20 09:43:08] 2024-05-20 07:42:57,920 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-20 09:43:08] 2024-05-20 07:42:57,982 | INFO     | [payload] execute_payloads thread has finished
[2024-05-20 09:43:08] 2024-05-20 07:42:57,987 | INFO     | [job] validate thread has finished
[2024-05-20 09:43:08] 2024-05-20 07:42:58,081 | INFO     | [data] copytool_in thread has finished
[2024-05-20 09:43:08] 2024-05-20 07:42:58,681 | INFO     | [data] copytool_out thread has finished
[2024-05-20 09:43:08] 2024-05-20 07:42:58,925 | INFO     | [job] queue monitor thread has finished
[2024-05-20 09:43:08] 2024-05-20 07:43:01,900 | INFO     | [data] queue_monitor thread has finished
[2024-05-20 09:43:08] 2024-05-20 07:43:03,246 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139924500408128)>', '<ExcThread(monitor, started 139923726268160)>']
[2024-05-20 09:43:08] 2024-05-20 07:43:03,758 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-20 09:43:08] 2024-05-20 07:43:03,759 | INFO     | [monitor] control thread has ended
[2024-05-20 09:43:08] 2024-05-20 07:43:08,272 | INFO     | all workflow threads have been joined
[2024-05-20 09:43:08] 2024-05-20 07:43:08,272 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-20 09:43:08] 2024-05-20 07:43:08,272 | INFO     | traces error code: 0
[2024-05-20 09:43:08] 2024-05-20 07:43:08,272 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-20 09:43:08] 2024-05-20 07:43:08,353 [wrapper] ==== pilot stdout END ====
[2024-05-20 09:43:08] 2024-05-20 07:43:08,355 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-20 09:43:08] 2024-05-20 07:43:08,357 [wrapper] pilotpid: 2458890
[2024-05-20 09:43:08] 2024-05-20 07:43:08,359 [wrapper] Pilot exit status: 0
[2024-05-20 09:43:08] 2024-05-20 07:43:08,368 [wrapper] pandaids: 6208654462
[2024-05-20 09:43:08] 2024-05-20 07:43:08,406 [wrapper] cleanup: SIGTERM to supervisor_pilot 2556289 2458891
[2024-05-20 09:43:08] 2024-05-20 07:43:08,408 [wrapper] Test setup, not cleaning
[2024-05-20 09:43:08] 2024-05-20 07:43:08,410 [wrapper] ==== wrapper stdout END ====
[2024-05-20 09:43:08] 2024-05-20 07:43:08,412 [wrapper] ==== wrapper stderr END ====
[2024-05-20 09:43:08] 2024-05-20 07:43:08,416 [wrapper] apfmon messages muted
[2024-05-20 09:43:08]  *** Error codes and diagnostics ***
[2024-05-20 09:43:08]     "exeErrorCode": 0,
[2024-05-20 09:43:08]     "exeErrorDiag": "",
[2024-05-20 09:43:08]     "pilotErrorCode": 0,
[2024-05-20 09:43:08]     "pilotErrorDiag": "",
[2024-05-20 09:43:08]  *** Listing of results directory ***
[2024-05-20 09:43:08] total 872584
[2024-05-20 09:43:08] -rw-r--r-- 1 boinc boinc    467845 May 18 11:37 pilot3.tar.gz
[2024-05-20 09:43:08] -rw-r--r-- 1 boinc boinc      5633 May 18 11:45 queuedata.json
[2024-05-20 09:43:08] -rwx------ 1 boinc boinc     32251 May 18 11:46 runpilot2-wrapper.sh
[2024-05-20 09:43:08] -rw-r--r-- 1 boinc boinc       100 May 20 08:11 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-20 09:43:08] -rwxr-xr-x 1 boinc boinc      7986 May 20 08:11 run_atlas
[2024-05-20 09:43:08] -rw-r--r-- 1 boinc boinc       105 May 20 08:11 job.xml
[2024-05-20 09:43:08] -rw-r--r-- 2 boinc boinc 616322084 May 20 08:11 EVNT.38776140._000316.pool.root.1
[2024-05-20 09:43:08] -rw-r--r-- 2 boinc boinc     17537 May 20 08:11 start_atlas.sh
[2024-05-20 09:43:08] drwxrwx--x 2 boinc boinc      4096 May 20 08:11 shared
[2024-05-20 09:43:08] -rw-r--r-- 2 boinc boinc    480002 May 20 08:11 input.tar.gz
[2024-05-20 09:43:08] -rw-r--r-- 1 boinc boinc      6528 May 20 08:11 init_data.xml
[2024-05-20 09:43:08] -rw-r--r-- 1 boinc boinc         0 May 20 08:11 boinc_lockfile
[2024-05-20 09:43:08] -rw-r--r-- 1 boinc boinc      2615 May 20 08:11 pandaJob.out
[2024-05-20 09:43:08] -rw------- 1 boinc boinc       424 May 20 08:11 setup.sh.local
[2024-05-20 09:43:08] -rw------- 1 boinc boinc   1013883 May 20 08:11 agis_schedconf.cvmfs.json
[2024-05-20 09:43:08] -rw------- 1 boinc boinc         0 May 20 08:11 agis_ddmendpoints.agis.ALL.json
[2024-05-20 09:43:08] -rw------- 1 boinc boinc   1324701 May 20 08:11 cric_ddmendpoints.json
[2024-05-20 09:43:08] drwx------ 4 boinc boinc      4096 May 20 08:11 pilot3
[2024-05-20 09:43:08] -rw------- 1 boinc boinc 271806414 May 20 09:42 HITS.38776146._016263.pool.root.1
[2024-05-20 09:43:08] -rw-r--r-- 1 boinc boinc       531 May 20 09:42 boinc_task_state.xml
[2024-05-20 09:43:08] -rw------- 1 boinc boinc      1033 May 20 09:42 memory_monitor_summary.json
[2024-05-20 09:43:08] -rw------- 1 boinc boinc    386885 May 20 09:42 log.38776146._016263.job.log.tgz.1
[2024-05-20 09:43:08] -rw------- 1 boinc boinc        95 May 20 09:42 pilot_heartbeat.json
[2024-05-20 09:43:08] -rw------- 1 boinc boinc      7720 May 20 09:42 heartbeat.json
[2024-05-20 09:43:08] -rw-r--r-- 1 boinc boinc      8192 May 20 09:42 boinc_mmap_file
[2024-05-20 09:43:08] -rw-r--r-- 1 boinc boinc        27 May 20 09:42 wrapper_checkpoint.txt
[2024-05-20 09:43:08] -rw------- 1 boinc boinc      4336 May 20 09:43 pilotlog.txt
[2024-05-20 09:43:08] -rw------- 1 boinc boinc    546047 May 20 09:43 log.38776146._016263.job.log.1
[2024-05-20 09:43:08] -rw------- 1 boinc boinc       357 May 20 09:43 output.list
[2024-05-20 09:43:08] -rw-r--r-- 1 boinc boinc       620 May 20 09:43 runtime_log
[2024-05-20 09:43:08] -rw------- 1 boinc boinc    952320 May 20 09:43 result.tar.gz
[2024-05-20 09:43:08] -rw-r--r-- 1 boinc boinc     11064 May 20 09:43 runtime_log.err
[2024-05-20 09:43:08] -rw------- 1 boinc boinc       660 May 20 09:43 9JUNDmApVS5n9Rq4apoT9bVoABFKDmABFKDmlqFKDmvtLKDmnd011n.diag
[2024-05-20 09:43:08] -rw-r--r-- 1 boinc boinc     21393 May 20 09:43 stderr.txt
[2024-05-20 09:43:08] HITS file was successfully produced:
[2024-05-20 09:43:08] -rw------- 1 boinc boinc 271806414 May 20 09:42 shared/HITS.pool.root.1
[2024-05-20 09:43:08]  *** Contents of shared directory: ***
[2024-05-20 09:43:08] total 868748
[2024-05-20 09:43:08] -rw-r--r-- 2 boinc boinc 616322084 May 20 08:11 ATLAS.root_0
[2024-05-20 09:43:08] -rw-r--r-- 2 boinc boinc     17537 May 20 08:11 start_atlas.sh
[2024-05-20 09:43:08] -rw-r--r-- 2 boinc boinc    480002 May 20 08:11 input.tar.gz
[2024-05-20 09:43:08] -rw------- 1 boinc boinc 271806414 May 20 09:42 HITS.pool.root.1
[2024-05-20 09:43:08] -rw------- 1 boinc boinc    952320 May 20 09:43 result.tar.gz
09:43:10 (2454487): run_atlas exited; CPU time 54873.766849
09:43:10 (2454487): called boinc_finish(0)

</stderr_txt>
]]>

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