Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
10:03:43 (80339): wrapper (7.7.26015): starting
10:03:43 (80339): wrapper: running run_atlas (--nthreads 12)
[2024-05-18 10:03:43] Arguments: --nthreads 12
[2024-05-18 10:03:43] Threads: 12
[2024-05-18 10:03:43] Checking for CVMFS
[2024-05-18 10:03:43] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-18 10:03:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-18 10:03:43] Running cvmfs_config stat atlas.cern.ch
[2024-05-18 10:03:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-18 10:03:44] 2.10.1.0 81338 22859 140420 132885 2 226 39165969 45568000 11865 130560 0 89496740 99.796 54525147 19584 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2024-05-18 10:03:44] CVMFS is ok
[2024-05-18 10:03:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-18 10:03:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-18 10:03:44] Further information can be found at the LHC@home message board.
[2024-05-18 10:03:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-18 10:03:44] Checking for apptainer binary...
[2024-05-18 10:03:44] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-18 10:03:44] Running /usr/bin/apptainer --version
[2024-05-18 10:03:44] apptainer version 1.1.8-1.el7
[2024-05-18 10:03:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-18 10:03:45] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0122.triumf.lcg
[2024-05-18 10:03:45] apptainer works
[2024-05-18 10:03:45] Set ATHENA_PROC_NUMBER=12
[2024-05-18 10:03:45] Set ATHENA_CORE_NUMBER=12
[2024-05-18 10:03:45] Starting ATLAS job with PandaID=6208653759
[2024-05-18 10:03:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-18 11:23:32]  *** The last 200 lines of the pilot log: ***
[2024-05-18 11:23:32]  filetype=log
[2024-05-18 11:23:32]  guid=1433154a-3058-4534-9e6c-672225f83dcb
[2024-05-18 11:23:32]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-18 11:23:32]  is_tar=False
[2024-05-18 11:23:32]  lfn=log.38776125._016186.job.log.tgz.1
[2024-05-18 11:23:32]  mtime=0
[2024-05-18 11:23:32]  protocol_id=None
[2024-05-18 11:23:32]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-18 11:23:32]  replicas=None
[2024-05-18 11:23:32]  scope=mc23_13p6TeV
[2024-05-18 11:23:32]  status=None
[2024-05-18 11:23:32]  status_code=0
[2024-05-18 11:23:32]  storage_token=
[2024-05-18 11:23:32]  surl=/home/boinc/slots/0/PanDA_Pilot-6208653759/log.38776125._016186.job.log.tgz.1
[2024-05-18 11:23:32]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0b/03/log.38776125._016186.job.log.tgz.1
[2024-05-18 11:23:32]  workdir=None
[2024-05-18 11:23:32] ]
[2024-05-18 11:23:32] 2024-05-18 18:23:08,457 | INFO     | transferring file log.38776125._016186.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6208653759/log.38776125._016186.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-05-18 11:23:32] 2024-05-18 18:23:08,458 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6208653759/log.38776125._016186.job.log.tgz.1 /home/boinc/slots/0/log.38776125._016186.job.log.t
[2024-05-18 11:23:32] 2024-05-18 18:23:08,484 | INFO     | adding to output.list: log.38776125._016186.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0b/03/log.38776125._016186.job.log.tg
[2024-05-18 11:23:32] 2024-05-18 18:23:08,486 | INFO     | summary of transferred files:
[2024-05-18 11:23:32] 2024-05-18 18:23:08,486 | INFO     |  -- lfn=log.38776125._016186.job.log.tgz.1, status_code=0, status=transferred
[2024-05-18 11:23:32] 2024-05-18 18:23:08,486 | INFO     | stage-out finished correctly
[2024-05-18 11:23:32] 2024-05-18 18:23:09,631 | INFO     | monitor loop #361: job 0:6208653759 is in state 'finished'
[2024-05-18 11:23:32] 2024-05-18 18:23:09,632 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 11:23:32] 2024-05-18 18:23:11,581 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-18 11:23:32] 2024-05-18 18:23:12,141 | INFO     | monitor loop #362: job 0:6208653759 is in state 'finished'
[2024-05-18 11:23:32] 2024-05-18 18:23:12,141 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 11:23:32] 2024-05-18 18:23:12,408 | INFO     | job 6208653759 has state=finished
[2024-05-18 11:23:32] 2024-05-18 18:23:12,408 | INFO     | preparing for final server update for job 6208653759 in state='finished'
[2024-05-18 11:23:32] 2024-05-18 18:23:12,409 | INFO     | this job has now completed (state=finished)
[2024-05-18 11:23:32] 2024-05-18 18:23:12,409 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-18 11:23:32] 2024-05-18 18:23:12,409 | INFO     | job 6208653759 has finished - writing final server update
[2024-05-18 11:23:32] 2024-05-18 18:23:12,410 | INFO     | total number of processed events: 400 (read)
[2024-05-18 11:23:32] 2024-05-18 18:23:12,416 | INFO     | executing command: lscpu
[2024-05-18 11:23:32] 2024-05-18 18:23:12,468 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-18 11:23:32] 2024-05-18 18:23:12,469 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-18 11:23:32] 2024-05-18 18:23:12,528 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-18 11:23:32] 2024-05-18 18:23:14,644 | INFO     | monitor loop #363: job 0:6208653759 is in state 'finished'
[2024-05-18 11:23:32] 2024-05-18 18:23:14,644 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 11:23:32] 2024-05-18 18:23:17,148 | INFO     | monitor loop #364: job 0:6208653759 is in state 'finished'
[2024-05-18 11:23:32] 2024-05-18 18:23:17,148 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 11:23:32] 2024-05-18 18:23:17,650 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-18 11:23:32] 2024-05-18 18:23:17,650 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6208653759/memory_monitor_summary.json (trf name=prmon)
[2024-05-18 11:23:32] 2024-05-18 18:23:17,652 | INFO     | extracted standard info from prmon json
[2024-05-18 11:23:32] 2024-05-18 18:23:17,652 | INFO     | extracted standard memory fields from prmon json
[2024-05-18 11:23:32] 2024-05-18 18:23:17,652 | WARNING  | GPU info not found in prmon json
[2024-05-18 11:23:32] 2024-05-18 18:23:17,652 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-18 11:23:32] 2024-05-18 18:23:17,653 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-18 11:23:32] 2024-05-18 18:23:17,655 | INFO     | fitting pss+swap vs Time
[2024-05-18 11:23:32] 2024-05-18 18:23:17,656 | INFO     | model: linear, x: [1716052173.0, 1716052234.0, 1716052295.0, 1716052356.0, 1716052417.0, 1716052478.0, 1716052539.0, 1716052600.0, 1716052661.0, 1716052722.0, 1716
[2024-05-18 11:23:32] 2024-05-18 18:23:17,656 | INFO     | sum of square deviations: 110960220.0
[2024-05-18 11:23:32] 2024-05-18 18:23:17,656 | INFO     | sum of deviations: 27932559288.0
[2024-05-18 11:23:32] 2024-05-18 18:23:17,657 | INFO     | mean x: 1716054308.0
[2024-05-18 11:23:32] 2024-05-18 18:23:17,657 | INFO     | mean y: 2597272.8028169014
[2024-05-18 11:23:32] 2024-05-18 18:23:17,657 | INFO     | -- intersect: -431988153102.7626
[2024-05-18 11:23:32] 2024-05-18 18:23:17,657 | INFO     | intersect: -431988153102.7626
[2024-05-18 11:23:32] 2024-05-18 18:23:17,657 | INFO     | chi2: 2.2426158580366864
[2024-05-18 11:23:32] 2024-05-18 18:23:17,657 | INFO     | -- intersect: -431988153102.7626
[2024-05-18 11:23:32] 2024-05-18 18:23:17,657 | INFO     | current memory leak: 251.73 B/s (using 71 data points, chi2=2.24)
[2024-05-18 11:23:32] 2024-05-18 18:23:17,658 | INFO     | ..............................
[2024-05-18 11:23:32] 2024-05-18 18:23:17,658 | INFO     | . Timing measurements:
[2024-05-18 11:23:32] 2024-05-18 18:23:17,658 | INFO     | . get job = 0 s
[2024-05-18 11:23:32] 2024-05-18 18:23:17,658 | INFO     | . initial setup = 2 s
[2024-05-18 11:23:32] 2024-05-18 18:23:17,658 | INFO     | . payload setup = 7 s
[2024-05-18 11:23:32] 2024-05-18 18:23:17,658 | INFO     | . stage-in = 0 s
[2024-05-18 11:23:32] 2024-05-18 18:23:17,658 | INFO     | . payload execution = 4721 s
[2024-05-18 11:23:32] 2024-05-18 18:23:17,658 | INFO     | . stage-out = 0 s
[2024-05-18 11:23:32] 2024-05-18 18:23:17,658 | INFO     | . log creation = 0 s
[2024-05-18 11:23:32] 2024-05-18 18:23:17,658 | INFO     | ..............................
[2024-05-18 11:23:32] 2024-05-18 18:23:17,727 | INFO     | 
[2024-05-18 11:23:32] 2024-05-18 18:23:17,728 | INFO     | job summary report
[2024-05-18 11:23:32] 2024-05-18 18:23:17,728 | INFO     | --------------------------------------------------
[2024-05-18 11:23:32] 2024-05-18 18:23:17,728 | INFO     | PanDA job id: 6208653759
[2024-05-18 11:23:32] 2024-05-18 18:23:17,728 | INFO     | task id: 38776125
[2024-05-18 11:23:32] 2024-05-18 18:23:17,728 | INFO     | errors: (none)
[2024-05-18 11:23:32] 2024-05-18 18:23:17,728 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-18 11:23:32] 2024-05-18 18:23:17,729 | INFO     | pilot state: finished 
[2024-05-18 11:23:32] 2024-05-18 18:23:17,729 | INFO     | transexitcode: 0
[2024-05-18 11:23:32] 2024-05-18 18:23:17,729 | INFO     | exeerrorcode: 0
[2024-05-18 11:23:32] 2024-05-18 18:23:17,729 | INFO     | exeerrordiag: 
[2024-05-18 11:23:32] 2024-05-18 18:23:17,729 | INFO     | exitcode: 0
[2024-05-18 11:23:32] 2024-05-18 18:23:17,729 | INFO     | exitmsg: OK
[2024-05-18 11:23:32] 2024-05-18 18:23:17,729 | INFO     | cpuconsumptiontime: 41561 s
[2024-05-18 11:23:32] 2024-05-18 18:23:17,729 | INFO     | nevents: 400
[2024-05-18 11:23:32] 2024-05-18 18:23:17,729 | INFO     | neventsw: 0
[2024-05-18 11:23:32] 2024-05-18 18:23:17,730 | INFO     | pid: 91204
[2024-05-18 11:23:32] 2024-05-18 18:23:17,730 | INFO     | pgrp: 91204
[2024-05-18 11:23:32] 2024-05-18 18:23:17,730 | INFO     | corecount: 12
[2024-05-18 11:23:32] 2024-05-18 18:23:17,730 | INFO     | event service: False
[2024-05-18 11:23:32] 2024-05-18 18:23:17,730 | INFO     | sizes: {0: 2392191, 1: 2392191, 6: 2392425, 11: 2392453, 4732: 2418578, 4734: 2427532, 4737: 2427716, 4743: 2427886}
[2024-05-18 11:23:32] 2024-05-18 18:23:17,730 | INFO     | --------------------------------------------------
[2024-05-18 11:23:32] 2024-05-18 18:23:17,730 | INFO     | 
[2024-05-18 11:23:32] 2024-05-18 18:23:17,730 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-18 11:23:32] 2024-05-18 18:23:17,759 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-18 11:23:32] 2024-05-18 18:23:17,760 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-18 11:23:32] 2024-05-18 18:23:17,760 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-18 11:23:32] 2024-05-18 18:23:17,760 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-18 11:23:32] 2024-05-18 18:23:17,760 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-18 11:23:32] 2024-05-18 18:23:17,760 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-18 11:23:32] 2024-05-18 18:23:17,760 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-18 11:23:32] 2024-05-18 18:23:17,760 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-18 11:23:32] 2024-05-18 18:23:17,761 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-18 11:23:32] 2024-05-18 18:23:17,761 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-18 11:23:32] 2024-05-18 18:23:17,761 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-18 11:23:32] 2024-05-18 18:23:17,761 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-18 11:23:32] 2024-05-18 18:23:17,761 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-18 11:23:32] 2024-05-18 18:23:17,761 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-18 11:23:32] 2024-05-18 18:23:17,761 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-18 11:23:32] 2024-05-18 18:23:17,761 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-18 11:23:32] 2024-05-18 18:23:17,762 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-18 11:23:32] 2024-05-18 18:23:17,762 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-18 11:23:32] 2024-05-18 18:23:17,762 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-18 11:23:32] 2024-05-18 18:23:17,762 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-18 11:23:32] 2024-05-18 18:23:17,762 | INFO     | job 6208653759 has completed (purged errors)
[2024-05-18 11:23:32] 2024-05-18 18:23:17,762 | INFO     | overall cleanup function is called
[2024-05-18 11:23:32] 2024-05-18 18:23:18,770 | INFO     | --- collectZombieJob: --- 10, [91204]
[2024-05-18 11:23:32] 2024-05-18 18:23:18,770 | INFO     | zombie collector waiting for pid 91204
[2024-05-18 11:23:32] 2024-05-18 18:23:18,770 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-18 11:23:32] 2024-05-18 18:23:19,772 | INFO     | collected zombie processes
[2024-05-18 11:23:32] 2024-05-18 18:23:19,773 | INFO     | will now attempt to kill all subprocesses of pid=91204
[2024-05-18 11:23:32] 2024-05-18 18:23:19,964 | INFO     | process IDs to be killed: [91204] (in reverse order)
[2024-05-18 11:23:32] 2024-05-18 18:23:20,075 | WARNING  | found no corresponding commands to process id(s)
[2024-05-18 11:23:32] 2024-05-18 18:23:20,076 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-18 11:23:32] 2024-05-18 18:23:20,087 | INFO     | did not find any defunct processes belonging to 91204
[2024-05-18 11:23:32] 2024-05-18 18:23:20,093 | INFO     | did not find any defunct processes belonging to 91204
[2024-05-18 11:23:32] 2024-05-18 18:23:20,093 | INFO     | ready for new job
[2024-05-18 11:23:32] 2024-05-18 18:23:20,093 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-18 11:23:32] 2024-05-18 18:23:20,095 | INFO     | *************************************
[2024-05-18 11:23:32] 2024-05-18 18:23:20,095 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-18 11:23:32] 2024-05-18 18:23:20,095 | INFO     | *************************************
[2024-05-18 11:23:32] 2024-05-18 18:23:20,095 | INFO     | 
[2024-05-18 11:23:32] 2024-05-18 18:23:20,097 | INFO     | architecture information:
[2024-05-18 11:23:32] 2024-05-18 18:23:20,098 | INFO     | executing command: cat /etc/os-release
[2024-05-18 11:23:32] 2024-05-18 18:23:20,120 | INFO     | cat /etc/os-release:
[2024-05-18 11:23:32] NAME="CentOS Linux"
[2024-05-18 11:23:32] VERSION="7 (Core)"
[2024-05-18 11:23:32] ID="centos"
[2024-05-18 11:23:32] ID_LIKE="rhel fedora"
[2024-05-18 11:23:32] VERSION_ID="7"
[2024-05-18 11:23:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-18 11:23:32] ANSI_COLOR="0;31"
[2024-05-18 11:23:32] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-18 11:23:32] HOME_URL="https://www.centos.org/"
[2024-05-18 11:23:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-18 11:23:32] 
[2024-05-18 11:23:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-18 11:23:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-18 11:23:32] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-18 11:23:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-18 11:23:32] 
[2024-05-18 11:23:32] 2024-05-18 18:23:20,120 | INFO     | *************************************
[2024-05-18 11:23:32] 2024-05-18 18:23:20,623 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-18 11:23:32] 2024-05-18 18:23:20,649 | INFO     | sufficient remaining disk space (2228326760448 B)
[2024-05-18 11:23:32] 2024-05-18 18:23:20,650 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-18 11:23:32] 2024-05-18 18:23:20,650 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-18 11:23:32] 2024-05-18 18:23:20,656 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-18 11:23:32] 2024-05-18 18:23:20,656 | INFO     | aborting loop
[2024-05-18 11:23:32] 2024-05-18 18:23:20,912 | INFO     | all payload control threads have been joined
[2024-05-18 11:23:32] 2024-05-18 18:23:21,399 | INFO     | found 0 job(s) in 20 queues
[2024-05-18 11:23:32] 2024-05-18 18:23:21,399 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-18 11:23:32] 2024-05-18 18:23:21,399 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-18 11:23:32] 2024-05-18 18:23:21,577 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-18 11:23:32] 2024-05-18 18:23:21,656 | INFO     | [job] retrieve thread has finished
[2024-05-18 11:23:32] 2024-05-18 18:23:21,660 | INFO     | all data control threads have been joined
[2024-05-18 11:23:32] 2024-05-18 18:23:21,662 | INFO     | [job] job monitor thread has finished
[2024-05-18 11:23:32] 2024-05-18 18:23:21,741 | INFO     | all job control threads have been joined
[2024-05-18 11:23:32] 2024-05-18 18:23:21,917 | INFO     | [payload] control thread has finished
[2024-05-18 11:23:32] 2024-05-18 18:23:22,159 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-18 11:23:32] 2024-05-18 18:23:22,394 | INFO     | [payload] failed_post thread has finished
[2024-05-18 11:23:32] 2024-05-18 18:23:22,433 | INFO     | [payload] validate_post thread has finished
[2024-05-18 11:23:32] 2024-05-18 18:23:22,472 | INFO     | [job] create_data_payload thread has finished
[2024-05-18 11:23:32] 2024-05-18 18:23:22,593 | INFO     | [job] validate thread has finished
[2024-05-18 11:23:32] 2024-05-18 18:23:22,623 | INFO     | [data] copytool_in thread has finished
[2024-05-18 11:23:32] 2024-05-18 18:23:22,666 | INFO     | [data] control thread has finished
[2024-05-18 11:23:32] 2024-05-18 18:23:22,738 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-18 11:23:32] 2024-05-18 18:23:22,747 | INFO     | [job] control thread has finished
[2024-05-18 11:23:32] 2024-05-18 18:23:22,966 | INFO     | [payload] execute_payloads thread has finished
[2024-05-18 11:23:32] 2024-05-18 18:23:23,053 | INFO     | [payload] validate_pre thread has finished
[2024-05-18 11:23:32] 2024-05-18 18:23:23,100 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-18 11:23:32] 2024-05-18 18:23:23,582 | INFO     | [data] copytool_out thread has finished
[2024-05-18 11:23:32] 2024-05-18 18:23:23,744 | INFO     | [job] queue monitor thread has finished
[2024-05-18 11:23:32] 2024-05-18 18:23:26,163 | INFO     | [data] queue_monitor thread has finished
[2024-05-18 11:23:32] 2024-05-18 18:23:26,575 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140683961284416)>', '<ExcThread(monitor, started 140683748562688)>']
[2024-05-18 11:23:32] 2024-05-18 18:23:27,423 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-18 11:23:32] 2024-05-18 18:23:27,423 | INFO     | [monitor] control thread has ended
[2024-05-18 11:23:32] 2024-05-18 18:23:31,577 | INFO     | all workflow threads have been joined
[2024-05-18 11:23:32] 2024-05-18 18:23:31,577 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-18 11:23:32] 2024-05-18 18:23:31,577 | INFO     | traces error code: 0
[2024-05-18 11:23:32] 2024-05-18 18:23:31,578 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-18 11:23:32] 2024-05-18 18:23:31,664 [wrapper] ==== pilot stdout END ====
[2024-05-18 11:23:32] 2024-05-18 18:23:31,669 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-18 11:23:32] 2024-05-18 18:23:31,673 [wrapper] pilotpid: 84638
[2024-05-18 11:23:32] 2024-05-18 18:23:31,677 [wrapper] Pilot exit status: 0
[2024-05-18 11:23:32] 2024-05-18 18:23:31,691 [wrapper] pandaids: 6208653759
[2024-05-18 11:23:32] 2024-05-18 18:23:31,768 [wrapper] cleanup: SIGTERM to supervisor_pilot  55066 84639
[2024-05-18 11:23:32] 2024-05-18 18:23:31,771 [wrapper] Test setup, not cleaning
[2024-05-18 11:23:32] 2024-05-18 18:23:31,774 [wrapper] ==== wrapper stdout END ====
[2024-05-18 11:23:32] 2024-05-18 18:23:31,777 [wrapper] ==== wrapper stderr END ====
[2024-05-18 11:23:32] 2024-05-18 18:23:31,783 [wrapper] apfmon messages muted
[2024-05-18 11:23:32]  *** Error codes and diagnostics ***
[2024-05-18 11:23:32]     "exeErrorCode": 0,
[2024-05-18 11:23:32]     "exeErrorDiag": "",
[2024-05-18 11:23:32]     "pilotErrorCode": 0,
[2024-05-18 11:23:32]     "pilotErrorDiag": "",
[2024-05-18 11:23:32]  *** Listing of results directory ***
[2024-05-18 11:23:32] total 828232
[2024-05-18 11:23:32] -rw-r--r-- 1 boinc boinc      5633 May 18 01:50 queuedata.json
[2024-05-18 11:23:32] -rw-r--r-- 1 boinc boinc    467845 May 18 01:50 pilot3.tar.gz
[2024-05-18 11:23:32] -rwx------ 1 boinc boinc     32251 May 18 01:51 runpilot2-wrapper.sh
[2024-05-18 11:23:32] -rw-r--r-- 1 boinc boinc       100 May 18 10:03 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-18 11:23:32] -rwxr-xr-x 1 boinc boinc      7986 May 18 10:03 run_atlas
[2024-05-18 11:23:32] -rw-r--r-- 1 boinc boinc       105 May 18 10:03 job.xml
[2024-05-18 11:23:32] -rw-r--r-- 1 boinc boinc      6619 May 18 10:03 init_data.xml
[2024-05-18 11:23:32] -rw-r--r-- 2 boinc boinc 599620891 May 18 10:03 EVNT.38776119._000208.pool.root.1
[2024-05-18 11:23:32] -rw-r--r-- 2 boinc boinc     17537 May 18 10:03 start_atlas.sh
[2024-05-18 11:23:32] drwxrwx--x 2 boinc boinc      4096 May 18 10:03 shared
[2024-05-18 11:23:32] -rw-r--r-- 2 boinc boinc    480011 May 18 10:03 input.tar.gz
[2024-05-18 11:23:32] -rw-r--r-- 1 boinc boinc         0 May 18 10:03 boinc_lockfile
[2024-05-18 11:23:32] -rw-r--r-- 1 boinc boinc      2633 May 18 10:03 pandaJob.out
[2024-05-18 11:23:32] -rw------- 1 boinc boinc       424 May 18 10:03 setup.sh.local
[2024-05-18 11:23:32] -rw------- 1 boinc boinc   1019426 May 18 10:03 agis_schedconf.cvmfs.json
[2024-05-18 11:23:32] -rw------- 1 boinc boinc         0 May 18 10:03 agis_ddmendpoints.agis.ALL.json
[2024-05-18 11:23:32] -rw------- 1 boinc boinc   1324701 May 18 10:03 cric_ddmendpoints.json
[2024-05-18 11:23:32] drwx------ 4 boinc boinc      4096 May 18 10:03 pilot3
[2024-05-18 11:23:32] -rw------- 1 boinc boinc 243287909 May 18 11:22 HITS.38776125._016186.pool.root.1
[2024-05-18 11:23:32] -rw-r--r-- 1 boinc boinc       530 May 18 11:22 boinc_task_state.xml
[2024-05-18 11:23:32] -rw-r--r-- 1 boinc boinc      8192 May 18 11:23 boinc_mmap_file
[2024-05-18 11:23:32] -rw-r--r-- 1 boinc boinc        27 May 18 11:23 wrapper_checkpoint.txt
[2024-05-18 11:23:32] -rw------- 1 boinc boinc      1051 May 18 11:23 memory_monitor_summary.json
[2024-05-18 11:23:32] -rw------- 1 boinc boinc    379144 May 18 11:23 log.38776125._016186.job.log.tgz.1
[2024-05-18 11:23:32] -rw------- 1 boinc boinc        95 May 18 11:23 pilot_heartbeat.json
[2024-05-18 11:23:32] -rw------- 1 boinc boinc      7766 May 18 11:23 heartbeat.json
[2024-05-18 11:23:32] -rw------- 1 boinc boinc      4210 May 18 11:23 pilotlog.txt
[2024-05-18 11:23:32] -rw------- 1 boinc boinc    456347 May 18 11:23 log.38776125._016186.job.log.1
[2024-05-18 11:23:32] -rw------- 1 boinc boinc       357 May 18 11:23 output.list
[2024-05-18 11:23:32] -rw-r--r-- 1 boinc boinc       620 May 18 11:23 runtime_log
[2024-05-18 11:23:32] -rw------- 1 boinc boinc    849920 May 18 11:23 result.tar.gz
[2024-05-18 11:23:32] -rw-r--r-- 1 boinc boinc     11286 May 18 11:23 runtime_log.err
[2024-05-18 11:23:32] -rw------- 1 boinc boinc       653 May 18 11:23 HoHMDmZxUS5n9Rq4apoT9bVoABFKDmABFKDmlqFKDmXrLKDmvrXrXn.diag
[2024-05-18 11:23:32] -rw-r--r-- 1 boinc boinc     21730 May 18 11:23 stderr.txt
[2024-05-18 11:23:32] HITS file was successfully produced:
[2024-05-18 11:23:32] -rw------- 1 boinc boinc 243287909 May 18 11:22 shared/HITS.pool.root.1
[2024-05-18 11:23:32]  *** Contents of shared directory: ***
[2024-05-18 11:23:32] total 824488
[2024-05-18 11:23:32] -rw-r--r-- 2 boinc boinc 599620891 May 18 10:03 ATLAS.root_0
[2024-05-18 11:23:32] -rw-r--r-- 2 boinc boinc     17537 May 18 10:03 start_atlas.sh
[2024-05-18 11:23:32] -rw-r--r-- 2 boinc boinc    480011 May 18 10:03 input.tar.gz
[2024-05-18 11:23:32] -rw------- 1 boinc boinc 243287909 May 18 11:22 HITS.pool.root.1
[2024-05-18 11:23:32] -rw------- 1 boinc boinc    849920 May 18 11:23 result.tar.gz
11:23:34 (80339): run_atlas exited; CPU time 41339.305103
11:23:34 (80339): called boinc_finish(0)

</stderr_txt>
]]>

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