Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2024-05-19 01:02:09 (26658): Detected: vboxwrapper 26206
2024-05-19 01:02:09 (26658): Detected: BOINC client v7.24.1
2024-05-19 01:02:10 (26658): Detected: VirtualBox VboxManage Interface (Version: 7.0.18)
2024-05-19 01:02:10 (26658): Successfully copied 'init_data.xml' to the shared directory.
2024-05-19 01:02:10 (26658): Create VM. (boinc_37f503ba06ca0c62, slot#8)
2024-05-19 01:02:10 (26658): Setting Memory Size for VM. (4300MB)
2024-05-19 01:02:10 (26658): Setting CPU Count for VM. (3)
2024-05-19 01:02:11 (26658): Setting Chipset Options for VM.
2024-05-19 01:02:11 (26658): Setting Graphics Controller Options for VM.
2024-05-19 01:02:11 (26658): Setting Boot Options for VM.
2024-05-19 01:02:11 (26658): Setting Network Configuration for NAT.
2024-05-19 01:02:11 (26658): Enabling VM Network Access.
2024-05-19 01:02:11 (26658): Disabling USB Support for VM.
2024-05-19 01:02:12 (26658): Disabling COM Port Support for VM.
2024-05-19 01:02:12 (26658): Disabling LPT Port Support for VM.
2024-05-19 01:02:12 (26658): Disabling Audio Support for VM.
2024-05-19 01:02:12 (26658): Disabling Clipboard Support for VM.
2024-05-19 01:02:12 (26658): Disabling Drag and Drop Support for VM.
2024-05-19 01:02:12 (26658): Adding storage controller(s) to VM.
2024-05-19 01:02:12 (26658): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-05-19 01:02:14 (26658): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-05-19 01:02:14 (26658): forwarding host port 60689 to guest port 80
2024-05-19 01:02:14 (26658): Enabling remote desktop for VM.
2024-05-19 01:02:14 (26658): Required extension pack not installed, remote desktop not enabled.
2024-05-19 01:02:14 (26658): Enabling shared directory for VM.
2024-05-19 01:02:14 (26658): Starting VM using VBoxManage interface. (boinc_37f503ba06ca0c62, slot#8)
2024-05-19 01:02:16 (26658): Successfully started VM. (PID = '26921')
2024-05-19 01:02:16 (26658): Reporting VM Process ID to BOINC.
2024-05-19 01:02:16 (26658): Guest Log: BIOS: VirtualBox 7.0.18
2024-05-19 01:02:16 (26658): Guest Log: CPUID EDX: 0x178bfbff
2024-05-19 01:02:16 (26658): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-05-19 01:02:16 (26658): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-05-19 01:02:16 (26658): VM state change detected. (old = 'poweredoff', new = 'running')
2024-05-19 01:02:16 (26658): Detected: Web Application Enabled (http://localhost:60689)
2024-05-19 01:02:16 (26658): Preference change detected
2024-05-19 01:02:16 (26658): Setting CPU throttle for VM. (100%)
2024-05-19 01:02:16 (26658): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-05-19 01:02:18 (26658): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-05-19 01:02:18 (26658): Guest Log: BIOS: Booting from Hard Disk...
2024-05-19 01:02:21 (26658): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-05-19 01:02:21 (26658): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-05-19 01:02:21 (26658): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-05-19 01:02:21 (26658): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-05-19 01:02:21 (26658): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-05-19 01:02:21 (26658): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-05-19 01:02:21 (26658): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-05-19 01:02:21 (26658): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-05-19 01:02:21 (26658): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-05-19 01:02:21 (26658): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-05-19 01:02:21 (26658): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-05-19 01:02:21 (26658): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-05-19 01:02:21 (26658): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-05-19 01:02:21 (26658): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-05-19 01:02:21 (26658): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-05-19 01:02:21 (26658): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-05-19 01:02:21 (26658): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-05-19 01:02:21 (26658): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-05-19 01:02:21 (26658): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-05-19 01:02:21 (26658): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-05-19 01:02:21 (26658): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-05-19 01:02:21 (26658): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-05-19 01:02:21 (26658): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-05-19 01:02:21 (26658): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-05-19 01:02:21 (26658): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-05-19 01:02:21 (26658): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-05-19 01:02:21 (26658): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-05-19 01:02:21 (26658): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-05-19 01:02:21 (26658): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-05-19 01:02:21 (26658): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-05-19 01:02:21 (26658): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-05-19 01:02:21 (26658): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-05-19 01:03:23 (26658): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-05-19 01:03:23 (26658): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-05-19 01:03:26 (26658): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-05-19 01:03:26 (26658): Guest Log: 00:00:00.000139 main     Log opened 2024-05-18T23:03:26.554505000Z
2024-05-19 01:03:26 (26658): Guest Log: 00:00:00.000206 main     OS Product: Linux
2024-05-19 01:03:26 (26658): Guest Log: 00:00:00.000219 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-05-19 01:03:26 (26658): Guest Log: 00:00:00.000229 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-05-19 01:03:26 (26658): Guest Log: 00:00:00.000240 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-05-19 01:03:26 (26658): Guest Log: 00:00:00.000240 main     Process ID: 1278
2024-05-19 01:03:26 (26658): Guest Log: 00:00:00.000240 main     Package type: LINUX_64BITS_GENERIC
2024-05-19 01:03:26 (26658): Guest Log: 00:00:00.002158 main     5.2.32 r132073 started. Verbose level = 0
2024-05-19 01:03:26 (26658): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-05-19 01:03:26 (26658): Guest Log: [INFO] Mounting shared directory
2024-05-19 01:03:26 (26658): Guest Log: [INFO] Checking for init_data.xml
2024-05-19 01:03:30 (26658): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-05-19 01:03:30 (26658): Guest Log: [INFO] Detected branch: prod
2024-05-19 01:03:30 (26658): Guest Log: This is the prod version of the ATLAS job wrapper
2024-05-19 01:03:30 (26658): Guest Log: Copying input files
2024-05-19 01:03:31 (26658): Guest Log: Copied input files into RunAtlas.
2024-05-19 01:03:31 (26658): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-05-19 01:03:31 (26658): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-05-19 01:03:31 (26658): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-05-19 01:03:31 (26658): Guest Log: Further information can be found at the LHC@home message board.
2024-05-19 01:03:40 (26658): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-05-19 01:03:40 (26658): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-05-19 01:03:40 (26658): Guest Log: 2.6.3.0 1552 0 30180 132893 4 1 3116989 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-05-19 01:03:41 (26658): Guest Log: copied the webapp to /var/www
2024-05-19 01:03:41 (26658): Guest Log: ATHENA_PROC_NUMBER=3
2024-05-19 01:03:41 (26658): Guest Log: ATHENA_CORE_NUMBER=3
2024-05-19 01:03:41 (26658): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-05-19 01:03:41 (26658): Guest Log:  *** Starting ATLAS job. (PandaID=6208638169 taskID=38776104) ***
2024-05-19 02:32:26 (26658): VM state change detected. (old = 'running', new = 'paused')
2024-05-19 04:53:34 (26658): Guest Log: 01:33:02.438495 timesync vgsvcTimeSyncWorker: Radical host time change: 8 476 183 000 000ns (HostNow=1 716 087 182 188 000 000 ns HostLast=1 716 078 706 005 000 000 ns)
2024-05-19 04:53:34 (26658): VM state change detected. (old = 'paused', new = 'running')
2024-05-19 04:53:43 (26658): Guest Log: 01:33:12.444540 timesync vgsvcTimeSyncWorker: Radical guest time change: 8 203 229 122 000ns (GuestNow=1 716 087 192 208 006 000 ns GuestLast=1 716 078 988 978 884 000 ns fSetTimeLastLoop=true )
2024-05-19 04:55:20 (26658): Guest Log:  *** Job finished ***
2024-05-19 04:55:20 (26658): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-05-19 04:55:20 (26658): Guest Log: 2024-05-19 02:54:41,888 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2024-05-19 04:55:20 (26658): Guest Log: 2024-05-19 02:54:41,914 | INFO     | [job] queue monitor thread has finished
2024-05-19 04:55:20 (26658): Guest Log: 2024-05-19 02:54:45,933 | INFO     | [data] queue_monitor thread has finished
2024-05-19 04:55:20 (26658): Guest Log: 2024-05-19 02:54:47,794 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139796991031104)>', '<ExcThread(monitor, started 139796211033856)>']
2024-05-19 04:55:20 (26658): Guest Log: 2024-05-19 02:54:48,145 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-05-19 04:55:20 (26658): Guest Log: 2024-05-19 02:54:48,145 | INFO     | [monitor] control thread has ended
2024-05-19 04:55:20 (26658): Guest Log: 2024-05-19 02:54:52,801 | INFO     | all workflow threads have been joined
2024-05-19 04:55:20 (26658): Guest Log: 2024-05-19 02:54:52,801 | INFO     | end of generic workflow (traces error code: 0)
2024-05-19 04:55:20 (26658): Guest Log: 2024-05-19 02:54:52,801 | INFO     | traces error code: 0
2024-05-19 04:55:20 (26658): Guest Log: 2024-05-19 02:54:52,801 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-05-19 04:55:20 (26658): Guest Log: 2024-05-19 02:54:52,845 [wrapper] ==== pilot stdout END ====
2024-05-19 04:55:20 (26658): Guest Log: 2024-05-19 02:54:52,847 [wrapper] ==== wrapper stdout RESUME ====
2024-05-19 04:55:20 (26658): Guest Log: 2024-05-19 02:54:52,849 [wrapper] pilotpid: 6421
2024-05-19 04:55:20 (26658): Guest Log: 2024-05-19 02:54:52,851 [wrapper] Pilot exit status: 0
2024-05-19 04:55:20 (26658): Guest Log: 2024-05-19 02:54:52,881 [wrapper] pandaids: 6208638169
2024-05-19 04:55:20 (26658): Guest Log: 2024-05-19 02:54:52,893 [wrapper] cleanup: SIGTERM to supervisor_pilot  3242 6422
2024-05-19 04:55:20 (26658): Guest Log: 2024-05-19 02:54:52,896 [wrapper] Test setup, not cleaning
2024-05-19 04:55:20 (26658): Guest Log: 2024-05-19 02:54:52,898 [wrapper] ==== wrapper stdout END ====
2024-05-19 04:55:20 (26658): Guest Log: 2024-05-19 02:54:52,900 [wrapper] ==== wrapper stderr END ====
2024-05-19 04:55:20 (26658): Guest Log: 2024-05-19 02:54:52,903 [wrapper] apfmon messages muted
2024-05-19 04:55:20 (26658): Guest Log:  *** Error codes and diagnostics ***
2024-05-19 04:55:20 (26658): Guest Log:     "exeErrorCode": 0,
2024-05-19 04:55:20 (26658): Guest Log:     "exeErrorDiag": "",
2024-05-19 04:55:20 (26658): Guest Log:     "pilotErrorCode": 0,
2024-05-19 04:55:20 (26658): Guest Log:     "pilotErrorDiag": "",
2024-05-19 04:55:20 (26658): Guest Log:  *** Listing of results directory ***
2024-05-19 04:55:20 (26658): Guest Log: total 232212
2024-05-19 04:55:20 (26658): Guest Log: -rw-r--r--. 1 atlas atlas    467845 May 18 08:24 pilot3.tar.gz
2024-05-19 04:55:20 (26658): Guest Log: -rwx------. 1 atlas atlas     32251 May 18 08:32 runpilot2-wrapper.sh
2024-05-19 04:55:20 (26658): Guest Log: -rw-r--r--. 1 atlas atlas      5633 May 18 08:32 queuedata.json
2024-05-19 04:55:20 (26658): Guest Log: -rw-r--r--. 1 atlas atlas    480003 May 18 23:03 input.tar.gz
2024-05-19 04:55:20 (26658): Guest Log: -rw-r--r--. 1 atlas atlas     17537 May 18 23:03 start_atlas.sh
2024-05-19 04:55:20 (26658): Guest Log: -rw-r--r--. 1 atlas atlas      7115 May 18 23:03 init_data.xml
2024-05-19 04:55:20 (26658): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 18 23:03 EVNT.38776100._000192.pool.root.1 -> /data/./ATLAS.root_0
2024-05-19 04:55:20 (26658): Guest Log: -rw-r--r--. 1 atlas atlas      2643 May 18 23:03 pandaJob.out
2024-05-19 04:55:20 (26658): Guest Log: -rw-------. 1 atlas atlas       424 May 18 23:03 setup.sh.local
2024-05-19 04:55:20 (26658): Guest Log: -rw-------. 1 atlas atlas   1013712 May 18 23:04 agis_schedconf.cvmfs.json
2024-05-19 04:55:20 (26658): Guest Log: -rw-------. 1 atlas atlas   1324701 May 18 23:04 cric_ddmendpoints.json
2024-05-19 04:55:20 (26658): Guest Log: drwx------. 4 atlas atlas      4096 May 18 23:04 pilot3
2024-05-19 04:55:20 (26658): Guest Log: -rw-------. 1 atlas atlas        97 May 19 02:54 pilot_heartbeat.json
2024-05-19 04:55:20 (26658): Guest Log: -rw-------. 1 atlas atlas 232846446 May 19 02:54 HITS.38776104._016681.pool.root.1
2024-05-19 04:55:20 (26658): Guest Log: -rw-------. 1 atlas atlas      1036 May 19 02:54 memory_monitor_summary.json
2024-05-19 04:55:20 (26658): Guest Log: -rw-------. 1 atlas atlas         0 May 19 02:54 agis_ddmendpoints.agis.ALL.json
2024-05-19 04:55:20 (26658): Guest Log: -rw-------. 1 atlas atlas    242988 May 19 02:54 log.38776104._016681.job.log.tgz.1
2024-05-19 04:55:20 (26658): Guest Log: -rw-------. 1 atlas atlas      7694 May 19 02:54 heartbeat.json
2024-05-19 04:55:20 (26658): Guest Log: -rw-------. 1 atlas atlas      4271 May 19 02:54 pilotlog.txt
2024-05-19 04:55:20 (26658): Guest Log: -rw-------. 1 atlas atlas    500245 May 19 02:54 log.38776104._016681.job.log.1
2024-05-19 04:55:20 (26658): Guest Log: -rw-------. 1 atlas atlas       357 May 19 02:54 output.list
2024-05-19 04:55:20 (26658): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 19 02:54 runtime_log
2024-05-19 04:55:20 (26658): Guest Log: -rw-------. 1 atlas atlas    757760 May 19 02:54 result.tar.gz
2024-05-19 04:55:20 (26658): Guest Log: -rw-r--r--. 1 atlas atlas     10949 May 19 02:54 runtime_log.err
2024-05-19 04:55:20 (26658): Guest Log: -rw-------. 1 atlas atlas       651 May 19 02:54 REmKDmlfUS5n9Rq4apoT9bVoABFKDmABFKDmlqFKDmeqLKDmVy693n.diag
2024-05-19 04:55:20 (26658): Guest Log: Looking for outputfile HITS.38776104._016681.pool.root.1
2024-05-19 04:55:20 (26658): Guest Log: HITS file was successfully produced
2024-05-19 04:55:20 (26658): Guest Log: -rw-------. 1 atlas atlas 232846446 May 19 02:54 /home/atlas/RunAtlas/HITS.38776104._016681.pool.root.1
2024-05-19 04:55:20 (26658): Guest Log: Successfully finished the ATLAS job!
2024-05-19 04:55:20 (26658): Guest Log: Copying the results back to the shared directory!
2024-05-19 04:55:20 (26658): Guest Log:  *** Contents of shared directory: ***
2024-05-19 04:55:20 (26658): Guest Log: total 588136
2024-05-19 04:55:20 (26658): Guest Log: -rw-r--r--. 1 root root 600981469 May 18 23:02 ATLAS.root_0
2024-05-19 04:55:20 (26658): Guest Log: -rw-r--r--. 1 root root      7115 May 18 23:02 init_data.xml
2024-05-19 04:55:20 (26658): Guest Log: -rw-r--r--. 1 root root    480003 May 18 23:02 input.tar.gz
2024-05-19 04:55:20 (26658): Guest Log: -rw-r--r--. 1 root root    757760 May 19  2024 result.tar.gz
2024-05-19 04:55:20 (26658): Guest Log: -rw-r--r--. 1 root root     17537 May 18 23:02 start_atlas.sh
2024-05-19 04:55:20 (26658): Guest Log:  *** Success! Shutting down the machine. ***
2024-05-19 04:55:20 (26658): VM Completion File Detected.
2024-05-19 04:55:20 (26658): Powering off VM.
2024-05-19 04:55:20 (26658): Successfully stopped VM.
2024-05-19 04:55:20 (26658): Deregistering VM. (boinc_37f503ba06ca0c62, slot#8)
2024-05-19 04:55:20 (26658): Removing network bandwidth throttle group from VM.
2024-05-19 04:55:20 (26658): Removing VM from VirtualBox.
04:55:25 (26658): called boinc_finish(0)

</stderr_txt>
]]>

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