Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
08:36:05 (110864): wrapper (7.7.26015): starting
08:36:05 (110864): wrapper: running run_atlas (--nthreads 12)
[2024-05-18 08:36:05] Arguments: --nthreads 12
[2024-05-18 08:36:05] Threads: 12
[2024-05-18 08:36:05] Checking for CVMFS
[2024-05-18 08:36:06] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-18 08:36:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-18 08:36:06] Running cvmfs_config stat atlas.cern.ch
[2024-05-18 08:36:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-18 08:36:06] 2.10.1.0 231954 17882 136372 132884 3 105 32133379 45568000 13762 130560 0 68079236 99.862 30180563 26799 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2024-05-18 08:36:06] CVMFS is ok
[2024-05-18 08:36:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-18 08:36:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-18 08:36:06] Further information can be found at the LHC@home message board.
[2024-05-18 08:36:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-18 08:36:06] Checking for apptainer binary...
[2024-05-18 08:36:06] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-18 08:36:06] Running /usr/bin/apptainer --version
[2024-05-18 08:36:06] apptainer version 1.1.8-1.el7
[2024-05-18 08:36:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-18 08:36:07] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0105.triumf.lcg
[2024-05-18 08:36:07] apptainer works
[2024-05-18 08:36:07] Set ATHENA_PROC_NUMBER=12
[2024-05-18 08:36:07] Set ATHENA_CORE_NUMBER=12
[2024-05-18 08:36:07] Starting ATLAS job with PandaID=6208607358
[2024-05-18 08:36:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-18 09:42:47]  *** The last 200 lines of the pilot log: ***
[2024-05-18 09:42:47]  filesize=357518
[2024-05-18 09:42:47]  filetype=log
[2024-05-18 09:42:47]  guid=49af4a23-6fca-4c95-8251-7b91e46d9881
[2024-05-18 09:42:47]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-18 09:42:47]  is_tar=False
[2024-05-18 09:42:47]  lfn=log.38776104._016635.job.log.tgz.1
[2024-05-18 09:42:47]  mtime=0
[2024-05-18 09:42:47]  protocol_id=None
[2024-05-18 09:42:47]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-18 09:42:47]  replicas=None
[2024-05-18 09:42:47]  scope=mc23_13p6TeV
[2024-05-18 09:42:47]  status=None
[2024-05-18 09:42:47]  status_code=0
[2024-05-18 09:42:47]  storage_token=
[2024-05-18 09:42:47]  surl=/home/boinc/slots/0/PanDA_Pilot-6208607358/log.38776104._016635.job.log.tgz.1
[2024-05-18 09:42:47]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/26/e6/log.38776104._016635.job.log.tgz.1
[2024-05-18 09:42:47]  workdir=None
[2024-05-18 09:42:47] ]
[2024-05-18 09:42:47] 2024-05-18 16:42:24,373 | INFO     | transferring file log.38776104._016635.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6208607358/log.38776104._016635.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-05-18 09:42:47] 2024-05-18 16:42:24,373 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6208607358/log.38776104._016635.job.log.tgz.1 /home/boinc/slots/0/log.38776104._016635.job.log.t
[2024-05-18 09:42:47] 2024-05-18 16:42:24,402 | INFO     | adding to output.list: log.38776104._016635.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/26/e6/log.38776104._016635.job.log.tg
[2024-05-18 09:42:47] 2024-05-18 16:42:24,404 | INFO     | summary of transferred files:
[2024-05-18 09:42:47] 2024-05-18 16:42:24,404 | INFO     |  -- lfn=log.38776104._016635.job.log.tgz.1, status_code=0, status=transferred
[2024-05-18 09:42:47] 2024-05-18 16:42:24,404 | INFO     | stage-out finished correctly
[2024-05-18 09:42:47] 2024-05-18 16:42:25,456 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-18 09:42:47] 2024-05-18 16:42:25,457 | INFO     | monitor loop #312: job 0:6208607358 is in state 'finished'
[2024-05-18 09:42:47] 2024-05-18 16:42:25,468 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 09:42:47] 2024-05-18 16:42:25,525 | INFO     | job 6208607358 has state=finished
[2024-05-18 09:42:47] 2024-05-18 16:42:25,526 | INFO     | preparing for final server update for job 6208607358 in state='finished'
[2024-05-18 09:42:47] 2024-05-18 16:42:25,824 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2024-05-18 09:42:47] 2024-05-18 16:42:25,825 | INFO     | this job has now completed (state=finished)
[2024-05-18 09:42:47] 2024-05-18 16:42:25,825 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-18 09:42:47] 2024-05-18 16:42:25,825 | INFO     | job 6208607358 has finished - writing final server update
[2024-05-18 09:42:47] 2024-05-18 16:42:25,826 | INFO     | total number of processed events: 400 (read)
[2024-05-18 09:42:47] 2024-05-18 16:42:25,831 | INFO     | executing command: lscpu
[2024-05-18 09:42:47] 2024-05-18 16:42:25,886 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-18 09:42:47] 2024-05-18 16:42:25,887 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-18 09:42:47] 2024-05-18 16:42:25,947 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-18 09:42:47] 2024-05-18 16:42:27,981 | INFO     | monitor loop #313: job 0:6208607358 is in state 'finished'
[2024-05-18 09:42:47] 2024-05-18 16:42:27,982 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 09:42:47] 2024-05-18 16:42:30,485 | INFO     | monitor loop #314: job 0:6208607358 is in state 'finished'
[2024-05-18 09:42:47] 2024-05-18 16:42:30,485 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 09:42:47] 2024-05-18 16:42:30,940 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-18 09:42:47] 2024-05-18 16:42:30,941 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6208607358/memory_monitor_summary.json (trf name=prmon)
[2024-05-18 09:42:47] 2024-05-18 16:42:30,942 | INFO     | extracted standard info from prmon json
[2024-05-18 09:42:47] 2024-05-18 16:42:30,943 | INFO     | extracted standard memory fields from prmon json
[2024-05-18 09:42:47] 2024-05-18 16:42:30,943 | WARNING  | GPU info not found in prmon json
[2024-05-18 09:42:47] 2024-05-18 16:42:30,943 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-18 09:42:47] 2024-05-18 16:42:30,943 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-18 09:42:47] 2024-05-18 16:42:30,946 | INFO     | fitting pss+swap vs Time
[2024-05-18 09:42:47] 2024-05-18 16:42:30,946 | INFO     | model: linear, x: [1716046929.0, 1716046990.0, 1716047051.0, 1716047112.0, 1716047173.0, 1716047234.0, 1716047295.0, 1716047356.0, 1716047417.0, 1716047478.0, 1716
[2024-05-18 09:42:47] 2024-05-18 16:42:30,946 | INFO     | sum of square deviations: 60482994.5
[2024-05-18 09:42:47] 2024-05-18 16:42:30,947 | INFO     | sum of deviations: 16495057671.500004
[2024-05-18 09:42:47] 2024-05-18 16:42:30,947 | INFO     | mean x: 1716048667.5
[2024-05-18 09:42:47] 2024-05-18 16:42:30,947 | INFO     | mean y: 2663720.5689655175
[2024-05-18 09:42:47] 2024-05-18 16:42:30,947 | INFO     | -- intersect: -468001970830.2755
[2024-05-18 09:42:47] 2024-05-18 16:42:30,947 | INFO     | intersect: -468001970830.2755
[2024-05-18 09:42:47] 2024-05-18 16:42:30,947 | INFO     | chi2: 2.4871404805780775
[2024-05-18 09:42:47] 2024-05-18 16:42:30,947 | INFO     | -- intersect: -468001970830.2755
[2024-05-18 09:42:47] 2024-05-18 16:42:30,948 | INFO     | current memory leak: 272.72 B/s (using 58 data points, chi2=2.49)
[2024-05-18 09:42:47] 2024-05-18 16:42:30,948 | INFO     | ..............................
[2024-05-18 09:42:47] 2024-05-18 16:42:30,948 | INFO     | . Timing measurements:
[2024-05-18 09:42:47] 2024-05-18 16:42:30,948 | INFO     | . get job = 0 s
[2024-05-18 09:42:47] 2024-05-18 16:42:30,948 | INFO     | . initial setup = 2 s
[2024-05-18 09:42:47] 2024-05-18 16:42:30,948 | INFO     | . payload setup = 9 s
[2024-05-18 09:42:47] 2024-05-18 16:42:30,949 | INFO     | . stage-in = 0 s
[2024-05-18 09:42:47] 2024-05-18 16:42:30,949 | INFO     | . payload execution = 3925 s
[2024-05-18 09:42:47] 2024-05-18 16:42:30,949 | INFO     | . stage-out = 0 s
[2024-05-18 09:42:47] 2024-05-18 16:42:30,949 | INFO     | . log creation = 0 s
[2024-05-18 09:42:47] 2024-05-18 16:42:30,949 | INFO     | ..............................
[2024-05-18 09:42:47] 2024-05-18 16:42:31,017 | INFO     | 
[2024-05-18 09:42:47] 2024-05-18 16:42:31,018 | INFO     | job summary report
[2024-05-18 09:42:47] 2024-05-18 16:42:31,018 | INFO     | --------------------------------------------------
[2024-05-18 09:42:47] 2024-05-18 16:42:31,018 | INFO     | PanDA job id: 6208607358
[2024-05-18 09:42:47] 2024-05-18 16:42:31,018 | INFO     | task id: 38776104
[2024-05-18 09:42:47] 2024-05-18 16:42:31,018 | INFO     | errors: (none)
[2024-05-18 09:42:47] 2024-05-18 16:42:31,018 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-18 09:42:47] 2024-05-18 16:42:31,018 | INFO     | pilot state: finished 
[2024-05-18 09:42:47] 2024-05-18 16:42:31,019 | INFO     | transexitcode: 0
[2024-05-18 09:42:47] 2024-05-18 16:42:31,019 | INFO     | exeerrorcode: 0
[2024-05-18 09:42:47] 2024-05-18 16:42:31,019 | INFO     | exeerrordiag: 
[2024-05-18 09:42:47] 2024-05-18 16:42:31,019 | INFO     | exitcode: 0
[2024-05-18 09:42:47] 2024-05-18 16:42:31,019 | INFO     | exitmsg: OK
[2024-05-18 09:42:47] 2024-05-18 16:42:31,019 | INFO     | cpuconsumptiontime: 35078 s
[2024-05-18 09:42:47] 2024-05-18 16:42:31,019 | INFO     | nevents: 400
[2024-05-18 09:42:47] 2024-05-18 16:42:31,019 | INFO     | neventsw: 0
[2024-05-18 09:42:47] 2024-05-18 16:42:31,019 | INFO     | pid: 124222
[2024-05-18 09:42:47] 2024-05-18 16:42:31,020 | INFO     | pgrp: 124222
[2024-05-18 09:42:47] 2024-05-18 16:42:31,020 | INFO     | corecount: 12
[2024-05-18 09:42:47] 2024-05-18 16:42:31,020 | INFO     | event service: False
[2024-05-18 09:42:47] 2024-05-18 16:42:31,020 | INFO     | sizes: {0: 2390699, 1: 2392232, 8: 2392438, 12: 2392466, 3938: 2418084, 3939: 2427038, 3940: 2427222, 3945: 2427392}
[2024-05-18 09:42:47] 2024-05-18 16:42:31,020 | INFO     | --------------------------------------------------
[2024-05-18 09:42:47] 2024-05-18 16:42:31,020 | INFO     | 
[2024-05-18 09:42:47] 2024-05-18 16:42:31,020 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-18 09:42:47] 2024-05-18 16:42:31,050 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-18 09:42:47] 2024-05-18 16:42:31,050 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-18 09:42:47] 2024-05-18 16:42:31,051 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-18 09:42:47] 2024-05-18 16:42:31,051 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-18 09:42:47] 2024-05-18 16:42:31,051 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-18 09:42:47] 2024-05-18 16:42:31,051 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-18 09:42:47] 2024-05-18 16:42:31,051 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-18 09:42:47] 2024-05-18 16:42:31,051 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-18 09:42:47] 2024-05-18 16:42:31,051 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-18 09:42:47] 2024-05-18 16:42:31,051 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-18 09:42:47] 2024-05-18 16:42:31,052 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-18 09:42:47] 2024-05-18 16:42:31,052 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-18 09:42:47] 2024-05-18 16:42:31,052 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-18 09:42:47] 2024-05-18 16:42:31,052 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-18 09:42:47] 2024-05-18 16:42:31,052 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-18 09:42:47] 2024-05-18 16:42:31,052 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-18 09:42:47] 2024-05-18 16:42:31,052 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-18 09:42:47] 2024-05-18 16:42:31,052 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-18 09:42:47] 2024-05-18 16:42:31,053 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-18 09:42:47] 2024-05-18 16:42:31,053 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-18 09:42:47] 2024-05-18 16:42:31,053 | INFO     | job 6208607358 has completed (purged errors)
[2024-05-18 09:42:47] 2024-05-18 16:42:31,053 | INFO     | overall cleanup function is called
[2024-05-18 09:42:47] 2024-05-18 16:42:32,062 | INFO     | --- collectZombieJob: --- 10, [124222]
[2024-05-18 09:42:47] 2024-05-18 16:42:32,063 | INFO     | zombie collector waiting for pid 124222
[2024-05-18 09:42:47] 2024-05-18 16:42:32,063 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-18 09:42:47] 2024-05-18 16:42:33,068 | INFO     | collected zombie processes
[2024-05-18 09:42:47] 2024-05-18 16:42:33,068 | INFO     | will now attempt to kill all subprocesses of pid=124222
[2024-05-18 09:42:47] 2024-05-18 16:42:33,221 | INFO     | process IDs to be killed: [124222] (in reverse order)
[2024-05-18 09:42:47] 2024-05-18 16:42:33,321 | WARNING  | found no corresponding commands to process id(s)
[2024-05-18 09:42:47] 2024-05-18 16:42:33,322 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-18 09:42:47] 2024-05-18 16:42:33,333 | INFO     | did not find any defunct processes belonging to 124222
[2024-05-18 09:42:47] 2024-05-18 16:42:33,339 | INFO     | did not find any defunct processes belonging to 124222
[2024-05-18 09:42:47] 2024-05-18 16:42:33,339 | INFO     | ready for new job
[2024-05-18 09:42:47] 2024-05-18 16:42:33,339 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-18 09:42:47] 2024-05-18 16:42:33,340 | INFO     | *************************************
[2024-05-18 09:42:47] 2024-05-18 16:42:33,341 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-18 09:42:47] 2024-05-18 16:42:33,341 | INFO     | *************************************
[2024-05-18 09:42:47] 2024-05-18 16:42:33,341 | INFO     | 
[2024-05-18 09:42:47] 2024-05-18 16:42:33,343 | INFO     | architecture information:
[2024-05-18 09:42:47] 2024-05-18 16:42:33,344 | INFO     | executing command: cat /etc/os-release
[2024-05-18 09:42:47] 2024-05-18 16:42:33,365 | INFO     | cat /etc/os-release:
[2024-05-18 09:42:47] NAME="CentOS Linux"
[2024-05-18 09:42:47] VERSION="7 (Core)"
[2024-05-18 09:42:47] ID="centos"
[2024-05-18 09:42:47] ID_LIKE="rhel fedora"
[2024-05-18 09:42:47] VERSION_ID="7"
[2024-05-18 09:42:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-18 09:42:47] ANSI_COLOR="0;31"
[2024-05-18 09:42:47] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-18 09:42:47] HOME_URL="https://www.centos.org/"
[2024-05-18 09:42:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-18 09:42:47] 
[2024-05-18 09:42:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-18 09:42:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-18 09:42:47] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-18 09:42:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-18 09:42:47] 
[2024-05-18 09:42:47] 2024-05-18 16:42:33,365 | INFO     | *************************************
[2024-05-18 09:42:47] 2024-05-18 16:42:33,868 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-18 09:42:47] 2024-05-18 16:42:33,894 | INFO     | sufficient remaining disk space (2142625595392 B)
[2024-05-18 09:42:47] 2024-05-18 16:42:33,895 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-18 09:42:47] 2024-05-18 16:42:33,895 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-18 09:42:47] 2024-05-18 16:42:33,994 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-18 09:42:47] 2024-05-18 16:42:33,994 | INFO     | aborting loop
[2024-05-18 09:42:47] 2024-05-18 16:42:34,032 | INFO     | all payload control threads have been joined
[2024-05-18 09:42:47] 2024-05-18 16:42:34,332 | INFO     | all data control threads have been joined
[2024-05-18 09:42:47] 2024-05-18 16:42:34,739 | INFO     | all job control threads have been joined
[2024-05-18 09:42:47] 2024-05-18 16:42:34,788 | INFO     | found 0 job(s) in 20 queues
[2024-05-18 09:42:47] 2024-05-18 16:42:34,788 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-18 09:42:47] 2024-05-18 16:42:34,789 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-18 09:42:47] 2024-05-18 16:42:34,901 | INFO     | [job] retrieve thread has finished
[2024-05-18 09:42:47] 2024-05-18 16:42:34,991 | INFO     | [job] validate thread has finished
[2024-05-18 09:42:47] 2024-05-18 16:42:34,992 | INFO     | [job] create_data_payload thread has finished
[2024-05-18 09:42:47] 2024-05-18 16:42:34,999 | INFO     | [job] job monitor thread has finished
[2024-05-18 09:42:47] 2024-05-18 16:42:35,001 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-18 09:42:47] 2024-05-18 16:42:35,037 | INFO     | [payload] control thread has finished
[2024-05-18 09:42:47] 2024-05-18 16:42:35,041 | INFO     | [data] copytool_in thread has finished
[2024-05-18 09:42:47] 2024-05-18 16:42:35,174 | INFO     | [payload] failed_post thread has finished
[2024-05-18 09:42:47] 2024-05-18 16:42:35,293 | INFO     | [payload] validate_pre thread has finished
[2024-05-18 09:42:47] 2024-05-18 16:42:35,337 | INFO     | [data] control thread has finished
[2024-05-18 09:42:47] 2024-05-18 16:42:35,639 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-18 09:42:47] 2024-05-18 16:42:35,735 | INFO     | [payload] validate_post thread has finished
[2024-05-18 09:42:47] 2024-05-18 16:42:35,745 | INFO     | [job] control thread has finished
[2024-05-18 09:42:47] 2024-05-18 16:42:36,027 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-18 09:42:47] 2024-05-18 16:42:36,034 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-18 09:42:47] 2024-05-18 16:42:36,164 | INFO     | [payload] execute_payloads thread has finished
[2024-05-18 09:42:47] 2024-05-18 16:42:37,007 | INFO     | [data] copytool_out thread has finished
[2024-05-18 09:42:47] 2024-05-18 16:42:37,033 | INFO     | [job] queue monitor thread has finished
[2024-05-18 09:42:47] 2024-05-18 16:42:40,040 | INFO     | [data] queue_monitor thread has finished
[2024-05-18 09:42:47] 2024-05-18 16:42:41,454 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140018067547968)>', '<ExcThread(monitor, started 140017653499648)>']
[2024-05-18 09:42:47] 2024-05-18 16:42:41,823 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-18 09:42:47] 2024-05-18 16:42:41,823 | INFO     | [monitor] control thread has ended
[2024-05-18 09:42:47] 2024-05-18 16:42:46,473 | INFO     | all workflow threads have been joined
[2024-05-18 09:42:47] 2024-05-18 16:42:46,473 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-18 09:42:47] 2024-05-18 16:42:46,473 | INFO     | traces error code: 0
[2024-05-18 09:42:47] 2024-05-18 16:42:46,474 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-18 09:42:47] 2024-05-18 16:42:46,549 [wrapper] ==== pilot stdout END ====
[2024-05-18 09:42:47] 2024-05-18 16:42:46,554 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-18 09:42:47] 2024-05-18 16:42:46,559 [wrapper] pilotpid: 115677
[2024-05-18 09:42:47] 2024-05-18 16:42:46,563 [wrapper] Pilot exit status: 0
[2024-05-18 09:42:47] 2024-05-18 16:42:46,577 [wrapper] pandaids: 6208607358
[2024-05-18 09:42:47] 2024-05-18 16:42:46,644 [wrapper] cleanup: SIGTERM to supervisor_pilot  95346 115678
[2024-05-18 09:42:47] 2024-05-18 16:42:46,649 [wrapper] Test setup, not cleaning
[2024-05-18 09:42:47] 2024-05-18 16:42:46,653 [wrapper] ==== wrapper stdout END ====
[2024-05-18 09:42:47] 2024-05-18 16:42:46,656 [wrapper] ==== wrapper stderr END ====
[2024-05-18 09:42:47] 2024-05-18 16:42:46,664 [wrapper] apfmon messages muted
[2024-05-18 09:42:47]  *** Error codes and diagnostics ***
[2024-05-18 09:42:47]     "exeErrorCode": 0,
[2024-05-18 09:42:47]     "exeErrorDiag": "",
[2024-05-18 09:42:47]     "pilotErrorCode": 0,
[2024-05-18 09:42:47]     "pilotErrorDiag": "",
[2024-05-18 09:42:47]  *** Listing of results directory ***
[2024-05-18 09:42:47] total 820512
[2024-05-18 09:42:47] -rw-r--r-- 1 boinc boinc    467845 May 18 00:59 pilot3.tar.gz
[2024-05-18 09:42:47] -rw-r--r-- 1 boinc boinc      5633 May 18 01:11 queuedata.json
[2024-05-18 09:42:47] -rwx------ 1 boinc boinc     32251 May 18 01:11 runpilot2-wrapper.sh
[2024-05-18 09:42:47] -rw-r--r-- 1 boinc boinc       100 May 18 08:36 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-18 09:42:47] -rwxr-xr-x 1 boinc boinc      7986 May 18 08:36 run_atlas
[2024-05-18 09:42:47] -rw-r--r-- 1 boinc boinc       105 May 18 08:36 job.xml
[2024-05-18 09:42:47] -rw-r--r-- 1 boinc boinc      6621 May 18 08:36 init_data.xml
[2024-05-18 09:42:47] -rw-r--r-- 2 boinc boinc 602669780 May 18 08:36 EVNT.38776100._000540.pool.root.1
[2024-05-18 09:42:47] drwxrwx--x 2 boinc boinc      4096 May 18 08:36 shared
[2024-05-18 09:42:47] -rw-r--r-- 2 boinc boinc    480004 May 18 08:36 input.tar.gz
[2024-05-18 09:42:47] -rw-r--r-- 2 boinc boinc     17537 May 18 08:36 start_atlas.sh
[2024-05-18 09:42:47] -rw-r--r-- 1 boinc boinc         0 May 18 08:36 boinc_lockfile
[2024-05-18 09:42:47] -rw-r--r-- 1 boinc boinc      2644 May 18 08:36 pandaJob.out
[2024-05-18 09:42:47] -rw------- 1 boinc boinc       424 May 18 08:36 setup.sh.local
[2024-05-18 09:42:47] -rw------- 1 boinc boinc   1019426 May 18 08:36 agis_schedconf.cvmfs.json
[2024-05-18 09:42:47] -rw------- 1 boinc boinc         0 May 18 08:36 agis_ddmendpoints.agis.ALL.json
[2024-05-18 09:42:47] -rw------- 1 boinc boinc   1324701 May 18 08:36 cric_ddmendpoints.json
[2024-05-18 09:42:47] drwx------ 4 boinc boinc      4096 May 18 08:36 pilot3
[2024-05-18 09:42:47] -rw------- 1 boinc boinc 232483701 May 18 09:41 HITS.38776104._016635.pool.root.1
[2024-05-18 09:42:47] -rw-r--r-- 1 boinc boinc       531 May 18 09:41 boinc_task_state.xml
[2024-05-18 09:42:47] -rw------- 1 boinc boinc      1058 May 18 09:42 memory_monitor_summary.json
[2024-05-18 09:42:47] -rw-r--r-- 1 boinc boinc      8192 May 18 09:42 boinc_mmap_file
[2024-05-18 09:42:47] -rw-r--r-- 1 boinc boinc        27 May 18 09:42 wrapper_checkpoint.txt
[2024-05-18 09:42:47] -rw------- 1 boinc boinc    357518 May 18 09:42 log.38776104._016635.job.log.tgz.1
[2024-05-18 09:42:47] -rw------- 1 boinc boinc      7777 May 18 09:42 heartbeat.json
[2024-05-18 09:42:47] -rw------- 1 boinc boinc        95 May 18 09:42 pilot_heartbeat.json
[2024-05-18 09:42:47] -rw------- 1 boinc boinc      4210 May 18 09:42 pilotlog.txt
[2024-05-18 09:42:47] -rw------- 1 boinc boinc    399991 May 18 09:42 log.38776104._016635.job.log.1
[2024-05-18 09:42:47] -rw------- 1 boinc boinc       357 May 18 09:42 output.list
[2024-05-18 09:42:47] -rw-r--r-- 1 boinc boinc       620 May 18 09:42 runtime_log
[2024-05-18 09:42:47] -rw------- 1 boinc boinc    778240 May 18 09:42 result.tar.gz
[2024-05-18 09:42:47] -rw-r--r-- 1 boinc boinc     11286 May 18 09:42 runtime_log.err
[2024-05-18 09:42:47] -rw------- 1 boinc boinc       653 May 18 09:42 nv3LDmSLUS5nsSi4apGgGQJmABFKDmABFKDm4ySLDmeLSKDmz07oEn.diag
[2024-05-18 09:42:47] -rw-r--r-- 1 boinc boinc     21650 May 18 09:42 stderr.txt
[2024-05-18 09:42:47] HITS file was successfully produced:
[2024-05-18 09:42:47] -rw------- 1 boinc boinc 232483701 May 18 09:41 shared/HITS.pool.root.1
[2024-05-18 09:42:47]  *** Contents of shared directory: ***
[2024-05-18 09:42:47] total 816844
[2024-05-18 09:42:47] -rw-r--r-- 2 boinc boinc 602669780 May 18 08:36 ATLAS.root_0
[2024-05-18 09:42:47] -rw-r--r-- 2 boinc boinc    480004 May 18 08:36 input.tar.gz
[2024-05-18 09:42:47] -rw-r--r-- 2 boinc boinc     17537 May 18 08:36 start_atlas.sh
[2024-05-18 09:42:47] -rw------- 1 boinc boinc 232483701 May 18 09:41 HITS.pool.root.1
[2024-05-18 09:42:47] -rw------- 1 boinc boinc    778240 May 18 09:42 result.tar.gz
09:42:48 (110864): run_atlas exited; CPU time 34722.416486
09:42:48 (110864): called boinc_finish(0)

</stderr_txt>
]]>

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