Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:04:12 (4114431): wrapper (7.7.26015): starting
23:04:12 (4114431): wrapper: running run_atlas (--nthreads 4)
[2024-05-20 23:04:12] Arguments: --nthreads 4
[2024-05-20 23:04:12] Threads: 4
[2024-05-20 23:04:12] Checking for CVMFS
[2024-05-20 23:04:12] No cvmfs_config command found, will try listing directly
[2024-05-20 23:04:12] CVMFS is ok
[2024-05-20 23:04:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-20 23:04:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-20 23:04:12] Further information can be found at the LHC@home message board.
[2024-05-20 23:04:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-20 23:04:12] Checking for apptainer binary...
[2024-05-20 23:04:12] which: no apptainer in ((null))
[2024-05-20 23:04:12] apptainer is not installed, using version from CVMFS
[2024-05-20 23:04:12] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-20 23:04:13] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot64/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut01.grid.cesnet.cz
[2024-05-20 23:04:13] apptainer works
[2024-05-20 23:04:13] Set ATHENA_PROC_NUMBER=4
[2024-05-20 23:04:13] Set ATHENA_CORE_NUMBER=4
[2024-05-20 23:04:13] Starting ATLAS job with PandaID=6208567947
[2024-05-20 23:04:13] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot64/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-21 01:28:23]  *** The last 200 lines of the pilot log: ***
[2024-05-21 01:28:23] 2024-05-20 23:28:08,571 | INFO     | right removable region: 135
[2024-05-21 01:28:23] 2024-05-20 23:28:08,571 | INFO     | model: linear, x: [1716239392.0, 1716239453.0, 1716239514.0, 1716239575.0, 1716239636.0, 1716239697.0, 1716239758.0, 1716239819.0, 1716239880.0, 1716239941.0, 1716
[2024-05-21 01:28:23] 2024-05-20 23:28:08,571 | INFO     | sum of square deviations: 779958810.0
[2024-05-21 01:28:23] 2024-05-20 23:28:08,572 | INFO     | sum of deviations: 29078997466.5
[2024-05-21 01:28:23] 2024-05-20 23:28:08,572 | INFO     | mean x: 1716243509.5
[2024-05-21 01:28:23] 2024-05-20 23:28:08,572 | INFO     | mean y: 2306104.1838235296
[2024-05-21 01:28:23] 2024-05-20 23:28:08,572 | INFO     | -- intersect: -63983945509.08736
[2024-05-21 01:28:23] 2024-05-20 23:28:08,572 | INFO     | intersect: -63983945509.08736
[2024-05-21 01:28:23] 2024-05-20 23:28:08,572 | INFO     | chi2: 1.6316053195543274
[2024-05-21 01:28:23] 2024-05-20 23:28:08,572 | INFO     | current chi2=1.6316053195543274 (change=57.33440634034114 %)
[2024-05-21 01:28:23] 2024-05-20 23:28:08,572 | INFO     | model: linear, x: [1716239697.0, 1716239758.0, 1716239819.0, 1716239880.0, 1716239941.0, 1716240002.0, 1716240063.0, 1716240124.0, 1716240185.0, 1716240246.0, 1716
[2024-05-21 01:28:23] 2024-05-20 23:28:08,572 | INFO     | sum of square deviations: 697054930.0
[2024-05-21 01:28:23] 2024-05-20 23:28:08,573 | INFO     | sum of deviations: 2759380201.0
[2024-05-21 01:28:23] 2024-05-20 23:28:08,573 | INFO     | mean x: 1716243662.0
[2024-05-21 01:28:23] 2024-05-20 23:28:08,573 | INFO     | mean y: 2354581.809160305
[2024-05-21 01:28:23] 2024-05-20 23:28:08,573 | INFO     | -- intersect: -6791613263.758672
[2024-05-21 01:28:23] 2024-05-20 23:28:08,573 | INFO     | intersect: -6791613263.758672
[2024-05-21 01:28:23] 2024-05-20 23:28:08,573 | INFO     | chi2: 0.06741540904208121
[2024-05-21 01:28:23] 2024-05-20 23:28:08,573 | INFO     | current chi2=0.06741540904208121 (change=95.86815461839169 %)
[2024-05-21 01:28:23] 2024-05-20 23:28:08,574 | INFO     | model: linear, x: [1716240002.0, 1716240063.0, 1716240124.0, 1716240185.0, 1716240246.0, 1716240307.0, 1716240368.0, 1716240429.0, 1716240490.0, 1716240551.0, 1716
[2024-05-21 01:28:23] 2024-05-20 23:28:08,574 | INFO     | sum of square deviations: 620244187.5
[2024-05-21 01:28:23] 2024-05-20 23:28:08,574 | INFO     | sum of deviations: -1261949212.0000002
[2024-05-21 01:28:23] 2024-05-20 23:28:08,574 | INFO     | mean x: 1716243814.5
[2024-05-21 01:28:23] 2024-05-20 23:28:08,574 | INFO     | mean y: 2362434.1746031744
[2024-05-21 01:28:23] 2024-05-20 23:28:08,574 | INFO     | -- intersect: 3494233173.0812044
[2024-05-21 01:28:23] 2024-05-20 23:28:08,574 | INFO     | intersect: 3494233173.0812044
[2024-05-21 01:28:23] 2024-05-20 23:28:08,575 | INFO     | chi2: 0.0023447939632654635
[2024-05-21 01:28:23] 2024-05-20 23:28:08,575 | INFO     | current chi2=0.0023447939632654635 (change=96.52187237816531 %)
[2024-05-21 01:28:23] 2024-05-20 23:28:08,575 | INFO     | model: linear, x: [1716240307.0, 1716240368.0, 1716240429.0, 1716240490.0, 1716240551.0, 1716240612.0, 1716240673.0, 1716240734.0, 1716240795.0, 1716240856.0, 1716
[2024-05-21 01:28:23] 2024-05-20 23:28:08,575 | INFO     | sum of square deviations: 549294020.0
[2024-05-21 01:28:23] 2024-05-20 23:28:08,575 | INFO     | sum of deviations: -1679220322.0
[2024-05-21 01:28:23] 2024-05-20 23:28:08,575 | INFO     | mean x: 1716243967.0
[2024-05-21 01:28:23] 2024-05-20 23:28:08,575 | INFO     | mean y: 2363319.380165289
[2024-05-21 01:28:23] 2024-05-20 23:28:08,575 | INFO     | -- intersect: 5249010182.377686
[2024-05-21 01:28:23] 2024-05-20 23:28:08,576 | INFO     | intersect: 5249010182.377686
[2024-05-21 01:28:23] 2024-05-20 23:28:08,576 | INFO     | chi2: 0.0012864684182168394
[2024-05-21 01:28:23] 2024-05-20 23:28:08,576 | INFO     | current chi2=0.0012864684182168394 (change=45.13511897543241 %)
[2024-05-21 01:28:23] 2024-05-20 23:28:08,576 | INFO     | model: linear, x: [1716240612.0, 1716240673.0, 1716240734.0, 1716240795.0, 1716240856.0, 1716240917.0, 1716240978.0, 1716241039.0, 1716241100.0, 1716241161.0, 1716
[2024-05-21 01:28:23] 2024-05-20 23:28:08,576 | INFO     | sum of square deviations: 483971865.0
[2024-05-21 01:28:23] 2024-05-20 23:28:08,576 | INFO     | sum of deviations: -1747999804.5000002
[2024-05-21 01:28:23] 2024-05-20 23:28:08,577 | INFO     | mean x: 1716244119.5
[2024-05-21 01:28:23] 2024-05-20 23:28:08,577 | INFO     | mean y: 2363480.474137931
[2024-05-21 01:28:23] 2024-05-20 23:28:08,577 | INFO     | -- intersect: 6201059318.630505
[2024-05-21 01:28:23] 2024-05-20 23:28:08,577 | INFO     | intersect: 6201059318.630505
[2024-05-21 01:28:23] 2024-05-20 23:28:08,577 | INFO     | chi2: 0.0010632931820863793
[2024-05-21 01:28:23] 2024-05-20 23:28:08,577 | INFO     | current chi2=0.0010632931820863793 (change=17.347898554696044 %)
[2024-05-21 01:28:23] 2024-05-20 23:28:08,577 | INFO     | left removable region: 50
[2024-05-21 01:28:23] 2024-05-20 23:28:08,577 | INFO     | model: linear, x: [1716242137.0, 1716242198.0, 1716242259.0, 1716242320.0, 1716242381.0, 1716242442.0, 1716242503.0, 1716242564.0, 1716242625.0, 1716242686.0, 1716
[2024-05-21 01:28:23] 2024-05-20 23:28:08,577 | INFO     | sum of square deviations: 190403570.0
[2024-05-21 01:28:23] 2024-05-20 23:28:08,577 | INFO     | sum of deviations: -353531417.0000001
[2024-05-21 01:28:23] 2024-05-20 23:28:08,578 | INFO     | mean x: 1716244699.0
[2024-05-21 01:28:23] 2024-05-20 23:28:08,578 | INFO     | mean y: 2359210.3411764707
[2024-05-21 01:28:23] 2024-05-20 23:28:08,578 | INFO     | -- intersect: 3188992845.1843085
[2024-05-21 01:28:23] 2024-05-20 23:28:08,578 | INFO     | intersect: 3188992845.1843085
[2024-05-21 01:28:23] 2024-05-20 23:28:08,578 | INFO     | chi2: 0.00043115938001828607
[2024-05-21 01:28:23] 2024-05-20 23:28:08,578 | INFO     | -- intersect: 3188992845.1843085
[2024-05-21 01:28:23] 2024-05-20 23:28:08,578 | INFO     | current memory leak: -1.86 B/s (using 85 data points, chi2=0.00)
[2024-05-21 01:28:23] 2024-05-20 23:28:08,578 | INFO     | ..............................
[2024-05-21 01:28:23] 2024-05-20 23:28:08,579 | INFO     | . Timing measurements:
[2024-05-21 01:28:23] 2024-05-20 23:28:08,579 | INFO     | . get job = 0 s
[2024-05-21 01:28:23] 2024-05-20 23:28:08,579 | INFO     | . initial setup = 1 s
[2024-05-21 01:28:23] 2024-05-20 23:28:08,579 | INFO     | . payload setup = 5 s
[2024-05-21 01:28:23] 2024-05-20 23:28:08,579 | INFO     | . stage-in = 0 s
[2024-05-21 01:28:23] 2024-05-20 23:28:08,579 | INFO     | . payload execution = 8595 s
[2024-05-21 01:28:23] 2024-05-20 23:28:08,579 | INFO     | . stage-out = 0 s
[2024-05-21 01:28:23] 2024-05-20 23:28:08,579 | INFO     | . log creation = 0 s
[2024-05-21 01:28:23] 2024-05-20 23:28:08,579 | INFO     | ..............................
[2024-05-21 01:28:23] 2024-05-20 23:28:08,640 | INFO     | 
[2024-05-21 01:28:23] 2024-05-20 23:28:08,640 | INFO     | job summary report
[2024-05-21 01:28:23] 2024-05-20 23:28:08,640 | INFO     | --------------------------------------------------
[2024-05-21 01:28:23] 2024-05-20 23:28:08,640 | INFO     | PanDA job id: 6208567947
[2024-05-21 01:28:23] 2024-05-20 23:28:08,640 | INFO     | task id: 38776125
[2024-05-21 01:28:23] 2024-05-20 23:28:08,640 | INFO     | errors: (none)
[2024-05-21 01:28:23] 2024-05-20 23:28:08,640 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-21 01:28:23] 2024-05-20 23:28:08,640 | INFO     | pilot state: finished 
[2024-05-21 01:28:23] 2024-05-20 23:28:08,641 | INFO     | transexitcode: 0
[2024-05-21 01:28:23] 2024-05-20 23:28:08,641 | INFO     | exeerrorcode: 0
[2024-05-21 01:28:23] 2024-05-20 23:28:08,641 | INFO     | exeerrordiag: 
[2024-05-21 01:28:23] 2024-05-20 23:28:08,641 | INFO     | exitcode: 0
[2024-05-21 01:28:23] 2024-05-20 23:28:08,641 | INFO     | exitmsg: OK
[2024-05-21 01:28:23] 2024-05-20 23:28:08,641 | INFO     | cpuconsumptiontime: 31540 s
[2024-05-21 01:28:23] 2024-05-20 23:28:08,641 | INFO     | nevents: 400
[2024-05-21 01:28:23] 2024-05-20 23:28:08,641 | INFO     | neventsw: 0
[2024-05-21 01:28:23] 2024-05-20 23:28:08,641 | INFO     | pid: 4125873
[2024-05-21 01:28:23] 2024-05-20 23:28:08,641 | INFO     | pgrp: 4125873
[2024-05-21 01:28:23] 2024-05-20 23:28:08,641 | INFO     | corecount: 4
[2024-05-21 01:28:23] 2024-05-20 23:28:08,641 | INFO     | event service: False
[2024-05-21 01:28:23] 2024-05-20 23:28:08,641 | INFO     | sizes: {0: 2392039, 1: 2392238, 5: 2392444, 11: 2392500, 8604: 2420611, 8605: 2420610, 8607: 2429832, 8611: 2429946}
[2024-05-21 01:28:23] 2024-05-20 23:28:08,641 | INFO     | --------------------------------------------------
[2024-05-21 01:28:23] 2024-05-20 23:28:08,642 | INFO     | 
[2024-05-21 01:28:23] 2024-05-20 23:28:08,642 | INFO     | executing command: ls -lF /scratch/boinc/var/slot64/slots/0
[2024-05-21 01:28:23] 2024-05-20 23:28:08,671 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-21 01:28:23] 2024-05-20 23:28:08,672 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-21 01:28:23] 2024-05-20 23:28:08,672 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-21 01:28:23] 2024-05-20 23:28:08,672 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-21 01:28:23] 2024-05-20 23:28:08,672 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-21 01:28:23] 2024-05-20 23:28:08,672 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-21 01:28:23] 2024-05-20 23:28:08,672 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-21 01:28:23] 2024-05-20 23:28:08,672 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-21 01:28:23] 2024-05-20 23:28:08,672 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-21 01:28:23] 2024-05-20 23:28:08,672 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-21 01:28:23] 2024-05-20 23:28:08,672 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-21 01:28:23] 2024-05-20 23:28:08,672 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-21 01:28:23] 2024-05-20 23:28:08,673 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-21 01:28:23] 2024-05-20 23:28:08,673 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-21 01:28:23] 2024-05-20 23:28:08,673 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-21 01:28:23] 2024-05-20 23:28:08,673 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-21 01:28:23] 2024-05-20 23:28:08,673 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-21 01:28:23] 2024-05-20 23:28:08,673 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-21 01:28:23] 2024-05-20 23:28:08,673 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-21 01:28:23] 2024-05-20 23:28:08,673 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-21 01:28:23] 2024-05-20 23:28:08,673 | INFO     | job 6208567947 has completed (purged errors)
[2024-05-21 01:28:23] 2024-05-20 23:28:08,673 | INFO     | overall cleanup function is called
[2024-05-21 01:28:23] 2024-05-20 23:28:09,097 | WARNING  | process 4125873 is no longer using CPU - aborting
[2024-05-21 01:28:23] 2024-05-20 23:28:09,097 | INFO     | aborting job monitoring since job object (job id=6208567947) has expired
[2024-05-21 01:28:23] 2024-05-20 23:28:09,681 | INFO     | --- collectZombieJob: --- 10, [4125873]
[2024-05-21 01:28:23] 2024-05-20 23:28:09,681 | INFO     | zombie collector waiting for pid 4125873
[2024-05-21 01:28:23] 2024-05-20 23:28:09,681 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-21 01:28:23] 2024-05-20 23:28:10,687 | INFO     | collected zombie processes
[2024-05-21 01:28:23] 2024-05-20 23:28:10,687 | INFO     | will now attempt to kill all subprocesses of pid=4125873
[2024-05-21 01:28:23] 2024-05-20 23:28:10,920 | INFO     | process IDs to be killed: [4125873] (in reverse order)
[2024-05-21 01:28:23] 2024-05-20 23:28:11,052 | WARNING  | found no corresponding commands to process id(s)
[2024-05-21 01:28:23] 2024-05-20 23:28:11,053 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-21 01:28:23] 2024-05-20 23:28:11,061 | INFO     | did not find any defunct processes belonging to 4125873
[2024-05-21 01:28:23] 2024-05-20 23:28:11,069 | INFO     | did not find any defunct processes belonging to 4125873
[2024-05-21 01:28:23] 2024-05-20 23:28:11,069 | INFO     | ready for new job
[2024-05-21 01:28:23] 2024-05-20 23:28:11,069 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-21 01:28:23] 2024-05-20 23:28:11,071 | INFO     | *************************************
[2024-05-21 01:28:23] 2024-05-20 23:28:11,071 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-21 01:28:23] 2024-05-20 23:28:11,071 | INFO     | *************************************
[2024-05-21 01:28:23] 2024-05-20 23:28:11,071 | INFO     | 
[2024-05-21 01:28:23] 2024-05-20 23:28:11,074 | INFO     | architecture information:
[2024-05-21 01:28:23] 2024-05-20 23:28:11,075 | INFO     | executing command: cat /etc/os-release
[2024-05-21 01:28:23] 2024-05-20 23:28:11,097 | INFO     | cat /etc/os-release:
[2024-05-21 01:28:23] NAME="CentOS Linux"
[2024-05-21 01:28:23] VERSION="7 (Core)"
[2024-05-21 01:28:23] ID="centos"
[2024-05-21 01:28:23] ID_LIKE="rhel fedora"
[2024-05-21 01:28:23] VERSION_ID="7"
[2024-05-21 01:28:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-21 01:28:23] ANSI_COLOR="0;31"
[2024-05-21 01:28:23] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-21 01:28:23] HOME_URL="https://www.centos.org/"
[2024-05-21 01:28:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-21 01:28:23] 
[2024-05-21 01:28:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-21 01:28:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-21 01:28:23] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-21 01:28:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-21 01:28:23] 
[2024-05-21 01:28:23] 2024-05-20 23:28:11,098 | INFO     | *************************************
[2024-05-21 01:28:23] 2024-05-20 23:28:11,599 | INFO     | executing command: df -mP /scratch/boinc/var/slot64/slots/0
[2024-05-21 01:28:23] 2024-05-20 23:28:11,624 | INFO     | sufficient remaining disk space (584530788352 B)
[2024-05-21 01:28:23] 2024-05-20 23:28:11,624 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-21 01:28:23] 2024-05-20 23:28:11,625 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-21 01:28:23] 2024-05-20 23:28:11,625 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-21 01:28:23] 2024-05-20 23:28:11,625 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-21 01:28:23] 2024-05-20 23:28:11,626 | INFO     | found 0 job(s) in 20 queues
[2024-05-21 01:28:23] 2024-05-20 23:28:11,626 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-21 01:28:23] 2024-05-20 23:28:11,626 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-21 01:28:23] 2024-05-20 23:28:11,991 | INFO     | all data control threads have been joined
[2024-05-21 01:28:23] 2024-05-20 23:28:12,155 | INFO     | all payload control threads have been joined
[2024-05-21 01:28:23] 2024-05-20 23:28:12,523 | INFO     | all job control threads have been joined
[2024-05-21 01:28:23] 2024-05-20 23:28:12,608 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-21 01:28:23] 2024-05-20 23:28:12,609 | INFO     | aborting loop
[2024-05-21 01:28:23] 2024-05-20 23:28:12,630 | INFO     | [job] retrieve thread has finished
[2024-05-21 01:28:23] 2024-05-20 23:28:12,726 | INFO     | [job] create_data_payload thread has finished
[2024-05-21 01:28:23] 2024-05-20 23:28:12,727 | INFO     | [job] validate thread has finished
[2024-05-21 01:28:23] 2024-05-20 23:28:12,919 | INFO     | [payload] validate_pre thread has finished
[2024-05-21 01:28:23] 2024-05-20 23:28:12,945 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-21 01:28:23] 2024-05-20 23:28:12,996 | INFO     | [data] control thread has finished
[2024-05-21 01:28:23] 2024-05-20 23:28:13,161 | INFO     | [payload] control thread has finished
[2024-05-21 01:28:23] 2024-05-20 23:28:13,228 | INFO     | [payload] validate_post thread has finished
[2024-05-21 01:28:23] 2024-05-20 23:28:13,511 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-21 01:28:23] 2024-05-20 23:28:13,529 | INFO     | [job] control thread has finished
[2024-05-21 01:28:23] 2024-05-20 23:28:13,614 | INFO     | [job] job monitor thread has finished
[2024-05-21 01:28:23] 2024-05-20 23:28:13,648 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-21 01:28:23] 2024-05-20 23:28:13,801 | INFO     | [data] copytool_in thread has finished
[2024-05-21 01:28:23] 2024-05-20 23:28:13,933 | INFO     | [payload] failed_post thread has finished
[2024-05-21 01:28:23] 2024-05-20 23:28:14,036 | INFO     | [payload] execute_payloads thread has finished
[2024-05-21 01:28:23] 2024-05-20 23:28:14,653 | INFO     | [job] queue monitor thread has finished
[2024-05-21 01:28:23] 2024-05-20 23:28:14,949 | INFO     | [data] copytool_out thread has finished
[2024-05-21 01:28:23] 2024-05-20 23:28:15,631 | INFO     | [data] queue_monitor thread has finished
[2024-05-21 01:28:23] 2024-05-20 23:28:17,049 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47434857124928)>', '<ExcThread(monitor, started 47435026274048)>']
[2024-05-21 01:28:23] 2024-05-20 23:28:17,657 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-21 01:28:23] 2024-05-20 23:28:17,657 | INFO     | [monitor] control thread has ended
[2024-05-21 01:28:23] 2024-05-20 23:28:22,075 | INFO     | all workflow threads have been joined
[2024-05-21 01:28:23] 2024-05-20 23:28:22,075 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-21 01:28:23] 2024-05-20 23:28:22,075 | INFO     | traces error code: 0
[2024-05-21 01:28:23] 2024-05-20 23:28:22,076 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-21 01:28:23] 2024-05-20 23:28:22,179 [wrapper] ==== pilot stdout END ====
[2024-05-21 01:28:23] 2024-05-20 23:28:22,182 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-21 01:28:23] 2024-05-20 23:28:22,185 [wrapper] pilotpid: 4118786
[2024-05-21 01:28:23] 2024-05-20 23:28:22,189 [wrapper] Pilot exit status: 0
[2024-05-21 01:28:23] 2024-05-20 23:28:22,200 [wrapper] pandaids: 6208567947
[2024-05-21 01:28:23] 2024-05-20 23:28:22,278 [wrapper] cleanup: SIGTERM to supervisor_pilot  160679 4118787
[2024-05-21 01:28:23] 2024-05-20 23:28:22,282 [wrapper] Test setup, not cleaning
[2024-05-21 01:28:23] 2024-05-20 23:28:22,285 [wrapper] ==== wrapper stdout END ====
[2024-05-21 01:28:23] 2024-05-20 23:28:22,288 [wrapper] ==== wrapper stderr END ====
[2024-05-21 01:28:23] 2024-05-20 23:28:22,294 [wrapper] apfmon messages muted
[2024-05-21 01:28:23]  *** Error codes and diagnostics ***
[2024-05-21 01:28:23]     "exeErrorCode": 0,
[2024-05-21 01:28:23]     "exeErrorDiag": "",
[2024-05-21 01:28:23]     "pilotErrorCode": 0,
[2024-05-21 01:28:23]     "pilotErrorDiag": "",
[2024-05-21 01:28:23]  *** Listing of results directory ***
[2024-05-21 01:28:23] total 841792
[2024-05-21 01:28:23] -rw-r--r-- 1 boinc boinc    467845 May 18 07:36 pilot3.tar.gz
[2024-05-21 01:28:23] -rwx------ 1 boinc boinc     32251 May 18 08:01 runpilot2-wrapper.sh
[2024-05-21 01:28:23] -rw-r--r-- 1 boinc boinc      5633 May 18 08:01 queuedata.json
[2024-05-21 01:28:23] -rw-r--r-- 1 boinc boinc       100 May 20 23:04 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-21 01:28:23] -rwxr-xr-x 1 boinc boinc      7986 May 20 23:04 run_atlas
[2024-05-21 01:28:23] -rw-r--r-- 1 boinc boinc       105 May 20 23:04 job.xml
[2024-05-21 01:28:23] -rw-r--r-- 1 boinc boinc      6663 May 20 23:04 init_data.xml
[2024-05-21 01:28:23] -rw-r--r-- 2 boinc boinc 604694561 May 20 23:04 EVNT.38776119._000457.pool.root.1
[2024-05-21 01:28:23] -rw-r--r-- 2 boinc boinc     17537 May 20 23:04 start_atlas.sh
[2024-05-21 01:28:23] drwxrwx--x 2 boinc boinc      4096 May 20 23:04 shared
[2024-05-21 01:28:23] -rw-r--r-- 2 boinc boinc    480014 May 20 23:04 input.tar.gz
[2024-05-21 01:28:23] -rw-r--r-- 1 boinc boinc         0 May 20 23:04 boinc_lockfile
[2024-05-21 01:28:23] -rw-r--r-- 1 boinc boinc      2636 May 20 23:04 pandaJob.out
[2024-05-21 01:28:23] -rw------- 1 boinc boinc       424 May 20 23:04 setup.sh.local
[2024-05-21 01:28:23] -rw------- 1 boinc boinc   1014363 May 20 23:04 agis_schedconf.cvmfs.json
[2024-05-21 01:28:23] -rw------- 1 boinc boinc         0 May 20 23:04 agis_ddmendpoints.agis.ALL.json
[2024-05-21 01:28:23] -rw------- 1 boinc boinc   1324701 May 20 23:04 cric_ddmendpoints.json
[2024-05-21 01:28:23] drwx------ 4 boinc boinc      4096 May 20 23:04 pilot3
[2024-05-21 01:28:23] -rw------- 1 boinc boinc 251373247 May 21 01:27 HITS.38776125._015981.pool.root.1
[2024-05-21 01:28:23] -rw------- 1 boinc boinc        95 May 21 01:27 pilot_heartbeat.json
[2024-05-21 01:28:23] -rw-r--r-- 1 boinc boinc       530 May 21 01:27 boinc_task_state.xml
[2024-05-21 01:28:23] -rw------- 1 boinc boinc      1049 May 21 01:27 memory_monitor_summary.json
[2024-05-21 01:28:23] -rw------- 1 boinc boinc    298586 May 21 01:28 log.38776125._015981.job.log.tgz.1
[2024-05-21 01:28:23] -rw------- 1 boinc boinc      7766 May 21 01:28 heartbeat.json
[2024-05-21 01:28:23] -rw-r--r-- 1 boinc boinc        27 May 21 01:28 wrapper_checkpoint.txt
[2024-05-21 01:28:23] -rw------- 1 boinc boinc      4344 May 21 01:28 pilotlog.txt
[2024-05-21 01:28:23] -rw------- 1 boinc boinc    897433 May 21 01:28 log.38776125._015981.job.log.1
[2024-05-21 01:28:23] -rw------- 1 boinc boinc       357 May 21 01:28 output.list
[2024-05-21 01:28:23] -rw-r--r-- 1 boinc boinc       620 May 21 01:28 runtime_log
[2024-05-21 01:28:23] -rw------- 1 boinc boinc   1218560 May 21 01:28 result.tar.gz
[2024-05-21 01:28:23] -rw-r--r-- 1 boinc boinc     11409 May 21 01:28 runtime_log.err
[2024-05-21 01:28:23] -rw------- 1 boinc boinc       655 May 21 01:28 5DLNDmNJSS5n7Olcko1bjSoqABFKDmABFKDmOtvXDmg6ZKDmPpO0Jn.diag
[2024-05-21 01:28:23] -rw-r--r-- 1 boinc boinc      8192 May 21 01:28 boinc_mmap_file
[2024-05-21 01:28:23] -rw-r--r-- 1 boinc boinc     21426 May 21 01:28 stderr.txt
[2024-05-21 01:28:23] HITS file was successfully produced:
[2024-05-21 01:28:23] -rw------- 1 boinc boinc 251373247 May 21 01:27 shared/HITS.pool.root.1
[2024-05-21 01:28:23]  *** Contents of shared directory: ***
[2024-05-21 01:28:23] total 837700
[2024-05-21 01:28:23] -rw-r--r-- 2 boinc boinc 604694561 May 20 23:04 ATLAS.root_0
[2024-05-21 01:28:23] -rw-r--r-- 2 boinc boinc     17537 May 20 23:04 start_atlas.sh
[2024-05-21 01:28:23] -rw-r--r-- 2 boinc boinc    480014 May 20 23:04 input.tar.gz
[2024-05-21 01:28:23] -rw------- 1 boinc boinc 251373247 May 21 01:27 HITS.pool.root.1
[2024-05-21 01:28:23] -rw------- 1 boinc boinc   1218560 May 21 01:28 result.tar.gz
01:28:25 (4114431): run_atlas exited; CPU time 31298.750332
01:28:25 (4114431): called boinc_finish(0)

</stderr_txt>
]]>

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