Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:03:52 (1138663): wrapper (7.7.26015): starting
12:03:52 (1138663): wrapper: running run_atlas (--nthreads 4)
[2024-05-20 12:03:52] Arguments: --nthreads 4
[2024-05-20 12:03:52] Threads: 4
[2024-05-20 12:03:52] Checking for CVMFS
[2024-05-20 12:03:52] No cvmfs_config command found, will try listing directly
[2024-05-20 12:03:52] CVMFS is ok
[2024-05-20 12:03:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-20 12:03:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-20 12:03:52] Further information can be found at the LHC@home message board.
[2024-05-20 12:03:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-20 12:03:52] Checking for apptainer binary...
[2024-05-20 12:03:52] which: no apptainer in ((null))
[2024-05-20 12:03:52] apptainer is not installed, using version from CVMFS
[2024-05-20 12:03:52] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-20 12:03:52] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot116/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2024-05-20 12:03:52] apptainer works
[2024-05-20 12:03:52] Set ATHENA_PROC_NUMBER=4
[2024-05-20 12:03:52] Set ATHENA_CORE_NUMBER=4
[2024-05-20 12:03:52] Starting ATLAS job with PandaID=6208567867
[2024-05-20 12:03:52] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot116/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-20 14:02:24]  *** The last 200 lines of the pilot log: ***
[2024-05-20 14:02:24] 2024-05-20 12:02:10,760 | INFO     | intersect: -100536820773.62602
[2024-05-20 14:02:24] 2024-05-20 12:02:10,760 | INFO     | chi2: 1.6874380244339102
[2024-05-20 14:02:24] 2024-05-20 12:02:10,761 | INFO     | current chi2=1.6874380244339102 (change=59.8458456633145 %)
[2024-05-20 14:02:24] 2024-05-20 12:02:10,761 | INFO     | model: linear, x: [1716200077.0, 1716200138.0, 1716200199.0, 1716200260.0, 1716200321.0, 1716200382.0, 1716200443.0, 1716200504.0, 1716200565.0, 1716200626.0, 1716
[2024-05-20 14:02:24] 2024-05-20 12:02:10,761 | INFO     | sum of square deviations: 369281342.5
[2024-05-20 14:02:24] 2024-05-20 12:02:10,761 | INFO     | sum of deviations: 3053541080.5
[2024-05-20 14:02:24] 2024-05-20 12:02:10,761 | INFO     | mean x: 1716203279.5
[2024-05-20 14:02:24] 2024-05-20 12:02:10,761 | INFO     | mean y: 2340109.7641509436
[2024-05-20 14:02:24] 2024-05-20 12:02:10,762 | INFO     | -- intersect: -14188729444.317299
[2024-05-20 14:02:24] 2024-05-20 12:02:10,762 | INFO     | intersect: -14188729444.317299
[2024-05-20 14:02:24] 2024-05-20 12:02:10,762 | INFO     | chi2: 0.05154799730399297
[2024-05-20 14:02:24] 2024-05-20 12:02:10,762 | INFO     | current chi2=0.05154799730399297 (change=96.94519167177795 %)
[2024-05-20 14:02:24] 2024-05-20 12:02:10,762 | INFO     | model: linear, x: [1716200382.0, 1716200443.0, 1716200504.0, 1716200565.0, 1716200626.0, 1716200687.0, 1716200748.0, 1716200809.0, 1716200870.0, 1716200931.0, 1716
[2024-05-20 14:02:24] 2024-05-20 12:02:10,762 | INFO     | sum of square deviations: 319447850.0
[2024-05-20 14:02:24] 2024-05-20 12:02:10,763 | INFO     | sum of deviations: 178976318.00000003
[2024-05-20 14:02:24] 2024-05-20 12:02:10,763 | INFO     | mean x: 1716203432.0
[2024-05-20 14:02:24] 2024-05-20 12:02:10,763 | INFO     | mean y: 2348710.1485148515
[2024-05-20 14:02:24] 2024-05-20 12:02:10,763 | INFO     | -- intersect: -959184670.6468903
[2024-05-20 14:02:24] 2024-05-20 12:02:10,763 | INFO     | intersect: -959184670.6468903
[2024-05-20 14:02:24] 2024-05-20 12:02:10,763 | INFO     | chi2: 0.0008006250308491851
[2024-05-20 14:02:24] 2024-05-20 12:02:10,763 | INFO     | current chi2=0.0008006250308491851 (change=98.44683581764065 %)
[2024-05-20 14:02:24] 2024-05-20 12:02:10,763 | INFO     | model: linear, x: [1716200687.0, 1716200748.0, 1716200809.0, 1716200870.0, 1716200931.0, 1716200992.0, 1716201053.0, 1716201114.0, 1716201175.0, 1716201236.0, 1716
[2024-05-20 14:02:24] 2024-05-20 12:02:10,763 | INFO     | sum of square deviations: 274312120.0
[2024-05-20 14:02:24] 2024-05-20 12:02:10,764 | INFO     | sum of deviations: -24177411.0
[2024-05-20 14:02:24] 2024-05-20 12:02:10,764 | INFO     | mean x: 1716203584.5
[2024-05-20 14:02:24] 2024-05-20 12:02:10,764 | INFO     | mean y: 2349403.9375
[2024-05-20 14:02:24] 2024-05-20 12:02:10,764 | INFO     | -- intersect: 153612714.58571243
[2024-05-20 14:02:24] 2024-05-20 12:02:10,764 | INFO     | intersect: 153612714.58571243
[2024-05-20 14:02:24] 2024-05-20 12:02:10,764 | INFO     | chi2: 0.0005882057470844177
[2024-05-20 14:02:24] 2024-05-20 12:02:10,764 | INFO     | current chi2=0.0005882057470844177 (change=26.531681571267423 %)
[2024-05-20 14:02:24] 2024-05-20 12:02:10,764 | INFO     | model: linear, x: [1716200992.0, 1716201053.0, 1716201114.0, 1716201175.0, 1716201236.0, 1716201297.0, 1716201358.0, 1716201419.0, 1716201480.0, 1716201541.0, 1716
[2024-05-20 14:02:24] 2024-05-20 12:02:10,765 | INFO     | sum of square deviations: 233641590.0
[2024-05-20 14:02:24] 2024-05-20 12:02:10,765 | INFO     | sum of deviations: -221785630.0
[2024-05-20 14:02:24] 2024-05-20 12:02:10,765 | INFO     | mean x: 1716203737.0
[2024-05-20 14:02:24] 2024-05-20 12:02:10,765 | INFO     | mean y: 2350145.3626373624
[2024-05-20 14:02:24] 2024-05-20 12:02:10,765 | INFO     | -- intersect: 1631466464.1605847
[2024-05-20 14:02:24] 2024-05-20 12:02:10,765 | INFO     | intersect: 1631466464.1605847
[2024-05-20 14:02:24] 2024-05-20 12:02:10,765 | INFO     | chi2: 0.00037590335199994836
[2024-05-20 14:02:24] 2024-05-20 12:02:10,765 | INFO     | current chi2=0.00037590335199994836 (change=36.09322012523626 %)
[2024-05-20 14:02:24] 2024-05-20 12:02:10,766 | INFO     | model: linear, x: [1716201297.0, 1716201358.0, 1716201419.0, 1716201480.0, 1716201541.0, 1716201602.0, 1716201663.0, 1716201724.0, 1716201785.0, 1716201846.0, 1716
[2024-05-20 14:02:24] 2024-05-20 12:02:10,766 | INFO     | sum of square deviations: 197203697.5
[2024-05-20 14:02:24] 2024-05-20 12:02:10,766 | INFO     | sum of deviations: -299935688.5000003
[2024-05-20 14:02:24] 2024-05-20 12:02:10,766 | INFO     | mean x: 1716203889.5
[2024-05-20 14:02:24] 2024-05-20 12:02:10,766 | INFO     | mean y: 2350469.7093023257
[2024-05-20 14:02:24] 2024-05-20 12:02:10,766 | INFO     | -- intersect: 2612599677.656131
[2024-05-20 14:02:24] 2024-05-20 12:02:10,766 | INFO     | intersect: 2612599677.656131
[2024-05-20 14:02:24] 2024-05-20 12:02:10,767 | INFO     | chi2: 0.00029844254471142245
[2024-05-20 14:02:24] 2024-05-20 12:02:10,767 | INFO     | current chi2=0.00029844254471142245 (change=20.606575300913132 %)
[2024-05-20 14:02:24] 2024-05-20 12:02:10,767 | INFO     | left removable region: 60
[2024-05-20 14:02:24] 2024-05-20 12:02:10,767 | INFO     | model: linear, x: [1716203127.0, 1716203188.0, 1716203249.0, 1716203310.0, 1716203371.0, 1716203432.0, 1716203493.0, 1716203554.0, 1716203615.0, 1716203676.0, 1716
[2024-05-20 14:02:24] 2024-05-20 12:02:10,767 | INFO     | sum of square deviations: 38744912.5
[2024-05-20 14:02:24] 2024-05-20 12:02:10,767 | INFO     | sum of deviations: -29268501.5
[2024-05-20 14:02:24] 2024-05-20 12:02:10,767 | INFO     | mean x: 1716204621.5
[2024-05-20 14:02:24] 2024-05-20 12:02:10,767 | INFO     | mean y: 2348054.38
[2024-05-20 14:02:24] 2024-05-20 12:02:10,767 | INFO     | -- intersect: 1298795363.1377547
[2024-05-20 14:02:24] 2024-05-20 12:02:10,767 | INFO     | intersect: 1298795363.1377547
[2024-05-20 14:02:24] 2024-05-20 12:02:10,767 | INFO     | chi2: 0.00011082908346910295
[2024-05-20 14:02:24] 2024-05-20 12:02:10,768 | INFO     | -- intersect: 1298795363.1377547
[2024-05-20 14:02:24] 2024-05-20 12:02:10,768 | INFO     | current memory leak: -0.76 B/s (using 50 data points, chi2=0.00)
[2024-05-20 14:02:24] 2024-05-20 12:02:10,768 | INFO     | ..............................
[2024-05-20 14:02:24] 2024-05-20 12:02:10,768 | INFO     | . Timing measurements:
[2024-05-20 14:02:24] 2024-05-20 12:02:10,768 | INFO     | . get job = 0 s
[2024-05-20 14:02:24] 2024-05-20 12:02:10,768 | INFO     | . initial setup = 1 s
[2024-05-20 14:02:24] 2024-05-20 12:02:10,768 | INFO     | . payload setup = 5 s
[2024-05-20 14:02:24] 2024-05-20 12:02:10,768 | INFO     | . stage-in = 0 s
[2024-05-20 14:02:24] 2024-05-20 12:02:10,768 | INFO     | . payload execution = 7055 s
[2024-05-20 14:02:24] 2024-05-20 12:02:10,769 | INFO     | . stage-out = 0 s
[2024-05-20 14:02:24] 2024-05-20 12:02:10,769 | INFO     | . log creation = 0 s
[2024-05-20 14:02:24] 2024-05-20 12:02:10,769 | INFO     | ..............................
[2024-05-20 14:02:24] 2024-05-20 12:02:10,970 | INFO     | 
[2024-05-20 14:02:24] 2024-05-20 12:02:10,970 | INFO     | job summary report
[2024-05-20 14:02:24] 2024-05-20 12:02:10,970 | INFO     | --------------------------------------------------
[2024-05-20 14:02:24] 2024-05-20 12:02:10,970 | INFO     | PanDA job id: 6208567867
[2024-05-20 14:02:24] 2024-05-20 12:02:10,970 | INFO     | task id: 38776125
[2024-05-20 14:02:24] 2024-05-20 12:02:10,970 | INFO     | errors: (none)
[2024-05-20 14:02:24] 2024-05-20 12:02:10,970 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-20 14:02:24] 2024-05-20 12:02:10,971 | INFO     | pilot state: finished 
[2024-05-20 14:02:24] 2024-05-20 12:02:10,971 | INFO     | transexitcode: 0
[2024-05-20 14:02:24] 2024-05-20 12:02:10,971 | INFO     | exeerrorcode: 0
[2024-05-20 14:02:24] 2024-05-20 12:02:10,971 | INFO     | exeerrordiag: 
[2024-05-20 14:02:24] 2024-05-20 12:02:10,971 | INFO     | exitcode: 0
[2024-05-20 14:02:24] 2024-05-20 12:02:10,971 | INFO     | exitmsg: OK
[2024-05-20 14:02:24] 2024-05-20 12:02:10,971 | INFO     | cpuconsumptiontime: 25501 s
[2024-05-20 14:02:24] 2024-05-20 12:02:10,971 | INFO     | nevents: 400
[2024-05-20 14:02:24] 2024-05-20 12:02:10,971 | INFO     | neventsw: 0
[2024-05-20 14:02:24] 2024-05-20 12:02:10,971 | INFO     | pid: 1151199
[2024-05-20 14:02:24] 2024-05-20 12:02:10,971 | INFO     | pgrp: 1151199
[2024-05-20 14:02:24] 2024-05-20 12:02:10,971 | INFO     | corecount: 4
[2024-05-20 14:02:24] 2024-05-20 12:02:10,971 | INFO     | event service: False
[2024-05-20 14:02:24] 2024-05-20 12:02:10,972 | INFO     | sizes: {0: 2392086, 1: 2392285, 5: 2392491, 11: 2392547, 7065: 2428797, 7067: 2428797, 7074: 2429095}
[2024-05-20 14:02:24] 2024-05-20 12:02:10,972 | INFO     | --------------------------------------------------
[2024-05-20 14:02:24] 2024-05-20 12:02:10,972 | INFO     | 
[2024-05-20 14:02:24] 2024-05-20 12:02:10,972 | INFO     | executing command: ls -lF /scratch/boinc/var/slot116/slots/0
[2024-05-20 14:02:24] 2024-05-20 12:02:10,996 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-20 14:02:24] 2024-05-20 12:02:10,996 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-20 14:02:24] 2024-05-20 12:02:10,996 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-20 14:02:24] 2024-05-20 12:02:10,996 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-20 14:02:24] 2024-05-20 12:02:10,996 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-20 14:02:24] 2024-05-20 12:02:10,997 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-20 14:02:24] 2024-05-20 12:02:10,997 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-20 14:02:24] 2024-05-20 12:02:10,997 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-20 14:02:24] 2024-05-20 12:02:10,997 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-20 14:02:24] 2024-05-20 12:02:10,997 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-20 14:02:24] 2024-05-20 12:02:10,997 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-20 14:02:24] 2024-05-20 12:02:10,997 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-20 14:02:24] 2024-05-20 12:02:10,997 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-20 14:02:24] 2024-05-20 12:02:10,997 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-20 14:02:24] 2024-05-20 12:02:10,997 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-20 14:02:24] 2024-05-20 12:02:10,997 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-20 14:02:24] 2024-05-20 12:02:10,997 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-20 14:02:24] 2024-05-20 12:02:10,997 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-20 14:02:24] 2024-05-20 12:02:10,998 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-20 14:02:24] 2024-05-20 12:02:10,998 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-20 14:02:24] 2024-05-20 12:02:10,998 | INFO     | job 6208567867 has completed (purged errors)
[2024-05-20 14:02:24] 2024-05-20 12:02:10,998 | INFO     | overall cleanup function is called
[2024-05-20 14:02:24] 2024-05-20 12:02:12,006 | INFO     | --- collectZombieJob: --- 10, [1151199]
[2024-05-20 14:02:24] 2024-05-20 12:02:12,006 | INFO     | zombie collector waiting for pid 1151199
[2024-05-20 14:02:24] 2024-05-20 12:02:12,006 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-20 14:02:24] 2024-05-20 12:02:13,011 | INFO     | collected zombie processes
[2024-05-20 14:02:24] 2024-05-20 12:02:13,012 | INFO     | will now attempt to kill all subprocesses of pid=1151199
[2024-05-20 14:02:24] 2024-05-20 12:02:13,258 | INFO     | process IDs to be killed: [1151199] (in reverse order)
[2024-05-20 14:02:24] 2024-05-20 12:02:13,395 | WARNING  | found no corresponding commands to process id(s)
[2024-05-20 14:02:24] 2024-05-20 12:02:13,396 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-20 14:02:24] 2024-05-20 12:02:13,411 | INFO     | did not find any defunct processes belonging to 1151199
[2024-05-20 14:02:24] 2024-05-20 12:02:13,425 | INFO     | did not find any defunct processes belonging to 1151199
[2024-05-20 14:02:24] 2024-05-20 12:02:13,426 | INFO     | ready for new job
[2024-05-20 14:02:24] 2024-05-20 12:02:13,426 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-20 14:02:24] 2024-05-20 12:02:13,427 | INFO     | *************************************
[2024-05-20 14:02:24] 2024-05-20 12:02:13,427 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-20 14:02:24] 2024-05-20 12:02:13,427 | INFO     | *************************************
[2024-05-20 14:02:24] 2024-05-20 12:02:13,427 | INFO     | 
[2024-05-20 14:02:24] 2024-05-20 12:02:13,434 | INFO     | architecture information:
[2024-05-20 14:02:24] 2024-05-20 12:02:13,434 | INFO     | executing command: cat /etc/os-release
[2024-05-20 14:02:24] 2024-05-20 12:02:13,447 | INFO     | cat /etc/os-release:
[2024-05-20 14:02:24] NAME="CentOS Linux"
[2024-05-20 14:02:24] VERSION="7 (Core)"
[2024-05-20 14:02:24] ID="centos"
[2024-05-20 14:02:24] ID_LIKE="rhel fedora"
[2024-05-20 14:02:24] VERSION_ID="7"
[2024-05-20 14:02:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-20 14:02:24] ANSI_COLOR="0;31"
[2024-05-20 14:02:24] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-20 14:02:24] HOME_URL="https://www.centos.org/"
[2024-05-20 14:02:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-20 14:02:24] 
[2024-05-20 14:02:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-20 14:02:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-20 14:02:24] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-20 14:02:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-20 14:02:24] 
[2024-05-20 14:02:24] 2024-05-20 12:02:13,447 | INFO     | *************************************
[2024-05-20 14:02:24] 2024-05-20 12:02:13,950 | INFO     | executing command: df -mP /scratch/boinc/var/slot116/slots/0
[2024-05-20 14:02:24] 2024-05-20 12:02:13,970 | INFO     | sufficient remaining disk space (3097438978048 B)
[2024-05-20 14:02:24] 2024-05-20 12:02:13,971 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-20 14:02:24] 2024-05-20 12:02:13,971 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-20 14:02:24] 2024-05-20 12:02:13,971 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-20 14:02:24] 2024-05-20 12:02:13,971 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-20 14:02:24] 2024-05-20 12:02:13,972 | INFO     | found 0 job(s) in 20 queues
[2024-05-20 14:02:24] 2024-05-20 12:02:13,972 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-20 14:02:24] 2024-05-20 12:02:13,972 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-20 14:02:24] 2024-05-20 12:02:14,163 | INFO     | all data control threads have been joined
[2024-05-20 14:02:24] 2024-05-20 12:02:14,251 | INFO     | all job control threads have been joined
[2024-05-20 14:02:24] 2024-05-20 12:02:14,376 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-20 14:02:24] 2024-05-20 12:02:14,444 | INFO     | all payload control threads have been joined
[2024-05-20 14:02:24] 2024-05-20 12:02:14,798 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-20 14:02:24] 2024-05-20 12:02:14,799 | INFO     | aborting loop
[2024-05-20 14:02:24] 2024-05-20 12:02:14,975 | INFO     | [job] retrieve thread has finished
[2024-05-20 14:02:24] 2024-05-20 12:02:14,986 | INFO     | [job] validate thread has finished
[2024-05-20 14:02:24] 2024-05-20 12:02:15,168 | INFO     | [data] control thread has finished
[2024-05-20 14:02:24] 2024-05-20 12:02:15,208 | INFO     | [data] copytool_in thread has finished
[2024-05-20 14:02:24] 2024-05-20 12:02:15,256 | INFO     | [job] control thread has finished
[2024-05-20 14:02:24] 2024-05-20 12:02:15,297 | INFO     | [job] create_data_payload thread has finished
[2024-05-20 14:02:24] 2024-05-20 12:02:15,430 | INFO     | [payload] validate_pre thread has finished
[2024-05-20 14:02:24] 2024-05-20 12:02:15,450 | INFO     | [payload] control thread has finished
[2024-05-20 14:02:24] 2024-05-20 12:02:15,647 | INFO     | [payload] validate_post thread has finished
[2024-05-20 14:02:24] 2024-05-20 12:02:15,804 | INFO     | [job] job monitor thread has finished
[2024-05-20 14:02:24] 2024-05-20 12:02:15,845 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-20 14:02:24] 2024-05-20 12:02:15,977 | INFO     | [data] copytool_out thread has finished
[2024-05-20 14:02:24] 2024-05-20 12:02:16,229 | INFO     | [payload] failed_post thread has finished
[2024-05-20 14:02:24] 2024-05-20 12:02:16,231 | INFO     | [payload] execute_payloads thread has finished
[2024-05-20 14:02:24] 2024-05-20 12:02:16,441 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-20 14:02:24] 2024-05-20 12:02:16,850 | INFO     | [job] queue monitor thread has finished
[2024-05-20 14:02:24] 2024-05-20 12:02:18,381 | INFO     | [data] queue_monitor thread has finished
[2024-05-20 14:02:24] 2024-05-20 12:02:18,945 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47844094772288)>', '<ExcThread(monitor, started 47844467685120)>']
[2024-05-20 14:02:24] 2024-05-20 12:02:18,984 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-20 14:02:24] 2024-05-20 12:02:18,984 | INFO     | [monitor] control thread has ended
[2024-05-20 14:02:24] 2024-05-20 12:02:23,970 | INFO     | all workflow threads have been joined
[2024-05-20 14:02:24] 2024-05-20 12:02:23,971 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-20 14:02:24] 2024-05-20 12:02:23,971 | INFO     | traces error code: 0
[2024-05-20 14:02:24] 2024-05-20 12:02:23,971 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-20 14:02:24] 2024-05-20 12:02:24,050 [wrapper] ==== pilot stdout END ====
[2024-05-20 14:02:24] 2024-05-20 12:02:24,053 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-20 14:02:24] 2024-05-20 12:02:24,055 [wrapper] pilotpid: 1143401
[2024-05-20 14:02:24] 2024-05-20 12:02:24,056 [wrapper] Pilot exit status: 0
[2024-05-20 14:02:24] 2024-05-20 12:02:24,063 [wrapper] pandaids: 6208567867
[2024-05-20 14:02:24] 2024-05-20 12:02:24,167 [wrapper] cleanup: SIGTERM to supervisor_pilot 1749776 1143402
[2024-05-20 14:02:24] 2024-05-20 12:02:24,169 [wrapper] Test setup, not cleaning
[2024-05-20 14:02:24] 2024-05-20 12:02:24,172 [wrapper] ==== wrapper stdout END ====
[2024-05-20 14:02:24] 2024-05-20 12:02:24,174 [wrapper] ==== wrapper stderr END ====
[2024-05-20 14:02:24] 2024-05-20 12:02:24,178 [wrapper] apfmon messages muted
[2024-05-20 14:02:24]  *** Error codes and diagnostics ***
[2024-05-20 14:02:24]     "exeErrorCode": 0,
[2024-05-20 14:02:24]     "exeErrorDiag": "",
[2024-05-20 14:02:24]     "pilotErrorCode": 0,
[2024-05-20 14:02:24]     "pilotErrorDiag": "",
[2024-05-20 14:02:24]  *** Listing of results directory ***
[2024-05-20 14:02:24] total 826128
[2024-05-20 14:02:24] -rw-r--r-- 1 boinc boinc    467845 May 18 07:36 pilot3.tar.gz
[2024-05-20 14:02:24] -rwx------ 1 boinc boinc     32251 May 18 07:52 runpilot2-wrapper.sh
[2024-05-20 14:02:24] -rw-r--r-- 1 boinc boinc      5633 May 18 07:52 queuedata.json
[2024-05-20 14:02:24] -rw-r--r-- 1 boinc boinc       100 May 20 12:03 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-20 14:02:24] -rwxr-xr-x 1 boinc boinc      7986 May 20 12:03 run_atlas
[2024-05-20 14:02:24] -rw-r--r-- 1 boinc boinc       105 May 20 12:03 job.xml
[2024-05-20 14:02:24] -rw-r--r-- 1 boinc boinc      6646 May 20 12:03 init_data.xml
[2024-05-20 14:02:24] -rw-r--r-- 2 boinc boinc 602054454 May 20 12:03 EVNT.38776119._000132.pool.root.1
[2024-05-20 14:02:24] -rw-r--r-- 2 boinc boinc     17537 May 20 12:03 start_atlas.sh
[2024-05-20 14:02:24] drwxrwx--x 2 boinc boinc      4096 May 20 12:03 shared
[2024-05-20 14:02:24] -rw-r--r-- 2 boinc boinc    480011 May 20 12:03 input.tar.gz
[2024-05-20 14:02:24] -rw-r--r-- 1 boinc boinc         0 May 20 12:03 boinc_lockfile
[2024-05-20 14:02:24] -rw-r--r-- 1 boinc boinc      2634 May 20 12:03 pandaJob.out
[2024-05-20 14:02:24] -rw------- 1 boinc boinc       424 May 20 12:03 setup.sh.local
[2024-05-20 14:02:24] -rw------- 1 boinc boinc   1013914 May 20 12:04 agis_schedconf.cvmfs.json
[2024-05-20 14:02:24] -rw------- 1 boinc boinc         0 May 20 12:04 agis_ddmendpoints.agis.ALL.json
[2024-05-20 14:02:24] -rw------- 1 boinc boinc   1324701 May 20 12:04 cric_ddmendpoints.json
[2024-05-20 14:02:24] drwx------ 4 boinc boinc      4096 May 20 12:04 pilot3
[2024-05-20 14:02:24] -rw------- 1 boinc boinc        95 May 20 14:01 pilot_heartbeat.json
[2024-05-20 14:02:24] -rw------- 1 boinc boinc 238403735 May 20 14:01 HITS.38776125._015918.pool.root.1
[2024-05-20 14:02:24] -rw-r--r-- 1 boinc boinc       530 May 20 14:01 boinc_task_state.xml
[2024-05-20 14:02:24] -rw------- 1 boinc boinc      1045 May 20 14:01 memory_monitor_summary.json
[2024-05-20 14:02:24] -rw------- 1 boinc boinc    255678 May 20 14:02 log.38776125._015918.job.log.tgz.1
[2024-05-20 14:02:24] -rw------- 1 boinc boinc      7721 May 20 14:02 heartbeat.json
[2024-05-20 14:02:24] -rw------- 1 boinc boinc      4346 May 20 14:02 pilotlog.txt
[2024-05-20 14:02:24] -rw-r--r-- 1 boinc boinc      8192 May 20 14:02 boinc_mmap_file
[2024-05-20 14:02:24] -rw-r--r-- 1 boinc boinc        27 May 20 14:02 wrapper_checkpoint.txt
[2024-05-20 14:02:24] -rw------- 1 boinc boinc    729013 May 20 14:02 log.38776125._015918.job.log.1
[2024-05-20 14:02:24] -rw------- 1 boinc boinc       357 May 20 14:02 output.list
[2024-05-20 14:02:24] -rw-r--r-- 1 boinc boinc       620 May 20 14:02 runtime_log
[2024-05-20 14:02:24] -rw------- 1 boinc boinc   1003520 May 20 14:02 result.tar.gz
[2024-05-20 14:02:24] -rw-r--r-- 1 boinc boinc     11428 May 20 14:02 runtime_log.err
[2024-05-20 14:02:24] -rw------- 1 boinc boinc       656 May 20 14:02 4szLDmNASS5n9Rq4apoT9bVoABFKDmABFKDmlqFKDmVlLKDmj4sL5n.diag
[2024-05-20 14:02:24] -rw-r--r-- 1 boinc boinc     21372 May 20 14:02 stderr.txt
[2024-05-20 14:02:24] HITS file was successfully produced:
[2024-05-20 14:02:24] -rw------- 1 boinc boinc 238403735 May 20 14:01 shared/HITS.pool.root.1
[2024-05-20 14:02:24]  *** Contents of shared directory: ***
[2024-05-20 14:02:24] total 822244
[2024-05-20 14:02:24] -rw-r--r-- 2 boinc boinc 602054454 May 20 12:03 ATLAS.root_0
[2024-05-20 14:02:24] -rw-r--r-- 2 boinc boinc     17537 May 20 12:03 start_atlas.sh
[2024-05-20 14:02:24] -rw-r--r-- 2 boinc boinc    480011 May 20 12:03 input.tar.gz
[2024-05-20 14:02:24] -rw------- 1 boinc boinc 238403735 May 20 14:01 HITS.pool.root.1
[2024-05-20 14:02:24] -rw------- 1 boinc boinc   1003520 May 20 14:02 result.tar.gz
14:02:26 (1138663): run_atlas exited; CPU time 25354.753995
14:02:26 (1138663): called boinc_finish(0)

</stderr_txt>
]]>

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