Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
08:04:24 (142548): wrapper (7.7.26015): starting
08:04:24 (142548): wrapper: running run_atlas (--nthreads 12)
[2024-05-18 08:04:25] Arguments: --nthreads 12
[2024-05-18 08:04:25] Threads: 12
[2024-05-18 08:04:25] Checking for CVMFS
[2024-05-18 08:04:25] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-18 08:04:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-18 08:04:25] Running cvmfs_config stat atlas.cern.ch
[2024-05-18 08:04:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-18 08:04:25] 2.10.1.0 2816 173816 181004 132882 2 335 39298536 45568000 9640 130560 0 1088376564 99.764 677571011 18448 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2024-05-18 08:04:25] CVMFS is ok
[2024-05-18 08:04:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-18 08:04:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-18 08:04:25] Further information can be found at the LHC@home message board.
[2024-05-18 08:04:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-18 08:04:25] Checking for apptainer binary...
[2024-05-18 08:04:25] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-18 08:04:25] Running /usr/bin/apptainer --version
[2024-05-18 08:04:25] apptainer version 1.1.8-1.el7
[2024-05-18 08:04:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-18 08:04:26] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0074.triumf.lcg
[2024-05-18 08:04:26] apptainer works
[2024-05-18 08:04:26] Set ATHENA_PROC_NUMBER=12
[2024-05-18 08:04:26] Set ATHENA_CORE_NUMBER=12
[2024-05-18 08:04:26] Starting ATLAS job with PandaID=6208546762
[2024-05-18 08:04:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-18 09:05:52]  *** The last 200 lines of the pilot log: ***
[2024-05-18 09:05:52]  filesize=342829
[2024-05-18 09:05:52]  filetype=log
[2024-05-18 09:05:52]  guid=3c9eb195-2454-4d79-8634-9f46a6d9c16b
[2024-05-18 09:05:52]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-18 09:05:52]  is_tar=False
[2024-05-18 09:05:52]  lfn=log.38776125._015811.job.log.tgz.1
[2024-05-18 09:05:52]  mtime=0
[2024-05-18 09:05:52]  protocol_id=None
[2024-05-18 09:05:52]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-18 09:05:52]  replicas=None
[2024-05-18 09:05:52]  scope=mc23_13p6TeV
[2024-05-18 09:05:52]  status=None
[2024-05-18 09:05:52]  status_code=0
[2024-05-18 09:05:52]  storage_token=
[2024-05-18 09:05:52]  surl=/home/boinc/slots/0/PanDA_Pilot-6208546762/log.38776125._015811.job.log.tgz.1
[2024-05-18 09:05:52]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d8/d4/log.38776125._015811.job.log.tgz.1
[2024-05-18 09:05:52]  workdir=None
[2024-05-18 09:05:52] ]
[2024-05-18 09:05:52] 2024-05-18 16:05:28,426 | INFO     | transferring file log.38776125._015811.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6208546762/log.38776125._015811.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-05-18 09:05:52] 2024-05-18 16:05:28,427 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6208546762/log.38776125._015811.job.log.tgz.1 /home/boinc/slots/0/log.38776125._015811.job.log.t
[2024-05-18 09:05:52] 2024-05-18 16:05:28,456 | INFO     | adding to output.list: log.38776125._015811.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d8/d4/log.38776125._015811.job.log.tg
[2024-05-18 09:05:52] 2024-05-18 16:05:28,456 | INFO     | summary of transferred files:
[2024-05-18 09:05:52] 2024-05-18 16:05:28,456 | INFO     |  -- lfn=log.38776125._015811.job.log.tgz.1, status_code=0, status=transferred
[2024-05-18 09:05:52] 2024-05-18 16:05:28,456 | INFO     | stage-out finished correctly
[2024-05-18 09:05:52] 2024-05-18 16:05:30,010 | INFO     | monitor loop #287: job 0:6208546762 is in state 'finished'
[2024-05-18 09:05:52] 2024-05-18 16:05:30,010 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 09:05:52] 2024-05-18 16:05:30,951 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-18 09:05:52] 2024-05-18 16:05:32,518 | INFO     | monitor loop #288: job 0:6208546762 is in state 'finished'
[2024-05-18 09:05:52] 2024-05-18 16:05:32,519 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 09:05:52] 2024-05-18 16:05:32,736 | INFO     | job 6208546762 has state=finished
[2024-05-18 09:05:52] 2024-05-18 16:05:32,737 | INFO     | preparing for final server update for job 6208546762 in state='finished'
[2024-05-18 09:05:52] 2024-05-18 16:05:32,737 | INFO     | this job has now completed (state=finished)
[2024-05-18 09:05:52] 2024-05-18 16:05:32,738 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-18 09:05:52] 2024-05-18 16:05:32,738 | INFO     | job 6208546762 has finished - writing final server update
[2024-05-18 09:05:52] 2024-05-18 16:05:32,738 | INFO     | total number of processed events: 400 (read)
[2024-05-18 09:05:52] 2024-05-18 16:05:32,744 | INFO     | executing command: lscpu
[2024-05-18 09:05:52] 2024-05-18 16:05:32,813 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-18 09:05:52] 2024-05-18 16:05:32,814 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-18 09:05:52] 2024-05-18 16:05:32,873 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-18 09:05:52] 2024-05-18 16:05:35,021 | INFO     | monitor loop #289: job 0:6208546762 is in state 'finished'
[2024-05-18 09:05:52] 2024-05-18 16:05:35,021 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 09:05:52] 2024-05-18 16:05:36,394 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-18 09:05:52] 2024-05-18 16:05:36,395 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6208546762/memory_monitor_summary.json (trf name=prmon)
[2024-05-18 09:05:52] 2024-05-18 16:05:36,397 | INFO     | extracted standard info from prmon json
[2024-05-18 09:05:52] 2024-05-18 16:05:36,397 | INFO     | extracted standard memory fields from prmon json
[2024-05-18 09:05:52] 2024-05-18 16:05:36,397 | WARNING  | GPU info not found in prmon json
[2024-05-18 09:05:52] 2024-05-18 16:05:36,397 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-18 09:05:52] 2024-05-18 16:05:36,398 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-18 09:05:52] 2024-05-18 16:05:36,400 | INFO     | fitting pss+swap vs Time
[2024-05-18 09:05:52] 2024-05-18 16:05:36,400 | INFO     | model: linear, x: [1716045005.0, 1716045066.0, 1716045127.0, 1716045188.0, 1716045249.0, 1716045310.0, 1716045371.0, 1716045432.0, 1716045493.0, 1716045554.0, 1716
[2024-05-18 09:05:52] 2024-05-18 16:05:36,400 | INFO     | sum of square deviations: 46147842.0
[2024-05-18 09:05:52] 2024-05-18 16:05:36,401 | INFO     | sum of deviations: 18258628946.000004
[2024-05-18 09:05:52] 2024-05-18 16:05:36,401 | INFO     | mean x: 1716046591.0
[2024-05-18 09:05:52] 2024-05-18 16:05:36,401 | INFO     | mean y: 2491257.150943396
[2024-05-18 09:05:52] 2024-05-18 16:05:36,401 | INFO     | -- intersect: -678960090766.0177
[2024-05-18 09:05:52] 2024-05-18 16:05:36,401 | INFO     | intersect: -678960090766.0177
[2024-05-18 09:05:52] 2024-05-18 16:05:36,401 | INFO     | chi2: 1.8992934630153915
[2024-05-18 09:05:52] 2024-05-18 16:05:36,402 | INFO     | -- intersect: -678960090766.0177
[2024-05-18 09:05:52] 2024-05-18 16:05:36,402 | INFO     | current memory leak: 395.66 B/s (using 53 data points, chi2=1.90)
[2024-05-18 09:05:52] 2024-05-18 16:05:36,402 | INFO     | ..............................
[2024-05-18 09:05:52] 2024-05-18 16:05:36,402 | INFO     | . Timing measurements:
[2024-05-18 09:05:52] 2024-05-18 16:05:36,403 | INFO     | . get job = 0 s
[2024-05-18 09:05:52] 2024-05-18 16:05:36,403 | INFO     | . initial setup = 2 s
[2024-05-18 09:05:52] 2024-05-18 16:05:36,403 | INFO     | . payload setup = 5 s
[2024-05-18 09:05:52] 2024-05-18 16:05:36,403 | INFO     | . stage-in = 0 s
[2024-05-18 09:05:52] 2024-05-18 16:05:36,403 | INFO     | . payload execution = 3626 s
[2024-05-18 09:05:52] 2024-05-18 16:05:36,403 | INFO     | . stage-out = 0 s
[2024-05-18 09:05:52] 2024-05-18 16:05:36,403 | INFO     | . log creation = 0 s
[2024-05-18 09:05:52] 2024-05-18 16:05:36,403 | INFO     | ..............................
[2024-05-18 09:05:52] 2024-05-18 16:05:36,494 | INFO     | 
[2024-05-18 09:05:52] 2024-05-18 16:05:36,494 | INFO     | job summary report
[2024-05-18 09:05:52] 2024-05-18 16:05:36,495 | INFO     | --------------------------------------------------
[2024-05-18 09:05:52] 2024-05-18 16:05:36,495 | INFO     | PanDA job id: 6208546762
[2024-05-18 09:05:52] 2024-05-18 16:05:36,495 | INFO     | task id: 38776125
[2024-05-18 09:05:52] 2024-05-18 16:05:36,495 | INFO     | errors: (none)
[2024-05-18 09:05:52] 2024-05-18 16:05:36,495 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-18 09:05:52] 2024-05-18 16:05:36,495 | INFO     | pilot state: finished 
[2024-05-18 09:05:52] 2024-05-18 16:05:36,495 | INFO     | transexitcode: 0
[2024-05-18 09:05:52] 2024-05-18 16:05:36,495 | INFO     | exeerrorcode: 0
[2024-05-18 09:05:52] 2024-05-18 16:05:36,495 | INFO     | exeerrordiag: 
[2024-05-18 09:05:52] 2024-05-18 16:05:36,496 | INFO     | exitcode: 0
[2024-05-18 09:05:52] 2024-05-18 16:05:36,496 | INFO     | exitmsg: OK
[2024-05-18 09:05:52] 2024-05-18 16:05:36,496 | INFO     | cpuconsumptiontime: 31928 s
[2024-05-18 09:05:52] 2024-05-18 16:05:36,496 | INFO     | nevents: 400
[2024-05-18 09:05:52] 2024-05-18 16:05:36,496 | INFO     | neventsw: 0
[2024-05-18 09:05:52] 2024-05-18 16:05:36,496 | INFO     | pid: 153256
[2024-05-18 09:05:52] 2024-05-18 16:05:36,496 | INFO     | pgrp: 153256
[2024-05-18 09:05:52] 2024-05-18 16:05:36,496 | INFO     | corecount: 12
[2024-05-18 09:05:52] 2024-05-18 16:05:36,496 | INFO     | event service: False
[2024-05-18 09:05:52] 2024-05-18 16:05:36,497 | INFO     | sizes: {0: 2392240, 1: 2392240, 5: 2392474, 11: 2392530, 3635: 2418227, 3637: 2427181, 3639: 2427365, 3645: 2427535}
[2024-05-18 09:05:52] 2024-05-18 16:05:36,497 | INFO     | --------------------------------------------------
[2024-05-18 09:05:52] 2024-05-18 16:05:36,497 | INFO     | 
[2024-05-18 09:05:52] 2024-05-18 16:05:36,497 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-18 09:05:52] 2024-05-18 16:05:36,529 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-18 09:05:52] 2024-05-18 16:05:36,530 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-18 09:05:52] 2024-05-18 16:05:36,530 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-18 09:05:52] 2024-05-18 16:05:36,530 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-18 09:05:52] 2024-05-18 16:05:36,530 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-18 09:05:52] 2024-05-18 16:05:36,530 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-18 09:05:52] 2024-05-18 16:05:36,531 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-18 09:05:52] 2024-05-18 16:05:36,531 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-18 09:05:52] 2024-05-18 16:05:36,531 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-18 09:05:52] 2024-05-18 16:05:36,531 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-18 09:05:52] 2024-05-18 16:05:36,531 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-18 09:05:52] 2024-05-18 16:05:36,531 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-18 09:05:52] 2024-05-18 16:05:36,531 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-18 09:05:52] 2024-05-18 16:05:36,531 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-18 09:05:52] 2024-05-18 16:05:36,532 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-18 09:05:52] 2024-05-18 16:05:36,532 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-18 09:05:52] 2024-05-18 16:05:36,532 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-18 09:05:52] 2024-05-18 16:05:36,532 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-18 09:05:52] 2024-05-18 16:05:36,532 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-18 09:05:52] 2024-05-18 16:05:36,532 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-18 09:05:52] 2024-05-18 16:05:36,532 | INFO     | job 6208546762 has completed (purged errors)
[2024-05-18 09:05:52] 2024-05-18 16:05:36,533 | INFO     | overall cleanup function is called
[2024-05-18 09:05:52] 2024-05-18 16:05:37,540 | INFO     | --- collectZombieJob: --- 10, [153256]
[2024-05-18 09:05:52] 2024-05-18 16:05:37,540 | INFO     | zombie collector waiting for pid 153256
[2024-05-18 09:05:52] 2024-05-18 16:05:37,540 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-18 09:05:52] 2024-05-18 16:05:38,545 | INFO     | collected zombie processes
[2024-05-18 09:05:52] 2024-05-18 16:05:38,546 | INFO     | will now attempt to kill all subprocesses of pid=153256
[2024-05-18 09:05:52] 2024-05-18 16:05:38,700 | INFO     | process IDs to be killed: [153256] (in reverse order)
[2024-05-18 09:05:52] 2024-05-18 16:05:38,828 | WARNING  | found no corresponding commands to process id(s)
[2024-05-18 09:05:52] 2024-05-18 16:05:38,829 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-18 09:05:52] 2024-05-18 16:05:38,839 | INFO     | did not find any defunct processes belonging to 153256
[2024-05-18 09:05:52] 2024-05-18 16:05:38,847 | INFO     | did not find any defunct processes belonging to 153256
[2024-05-18 09:05:52] 2024-05-18 16:05:38,847 | INFO     | ready for new job
[2024-05-18 09:05:52] 2024-05-18 16:05:38,848 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-18 09:05:52] 2024-05-18 16:05:38,850 | INFO     | *************************************
[2024-05-18 09:05:52] 2024-05-18 16:05:38,850 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-18 09:05:52] 2024-05-18 16:05:38,850 | INFO     | *************************************
[2024-05-18 09:05:52] 2024-05-18 16:05:38,850 | INFO     | 
[2024-05-18 09:05:52] 2024-05-18 16:05:38,855 | INFO     | architecture information:
[2024-05-18 09:05:52] 2024-05-18 16:05:38,855 | INFO     | executing command: cat /etc/os-release
[2024-05-18 09:05:52] 2024-05-18 16:05:38,878 | INFO     | cat /etc/os-release:
[2024-05-18 09:05:52] NAME="CentOS Linux"
[2024-05-18 09:05:52] VERSION="7 (Core)"
[2024-05-18 09:05:52] ID="centos"
[2024-05-18 09:05:52] ID_LIKE="rhel fedora"
[2024-05-18 09:05:52] VERSION_ID="7"
[2024-05-18 09:05:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-18 09:05:52] ANSI_COLOR="0;31"
[2024-05-18 09:05:52] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-18 09:05:52] HOME_URL="https://www.centos.org/"
[2024-05-18 09:05:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-18 09:05:52] 
[2024-05-18 09:05:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-18 09:05:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-18 09:05:52] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-18 09:05:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-18 09:05:52] 
[2024-05-18 09:05:52] 2024-05-18 16:05:38,879 | INFO     | *************************************
[2024-05-18 09:05:52] 2024-05-18 16:05:39,382 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-18 09:05:52] 2024-05-18 16:05:39,408 | INFO     | sufficient remaining disk space (2188986286080 B)
[2024-05-18 09:05:52] 2024-05-18 16:05:39,409 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-18 09:05:52] 2024-05-18 16:05:39,409 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-18 09:05:52] 2024-05-18 16:05:39,410 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-18 09:05:52] 2024-05-18 16:05:39,410 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-18 09:05:52] 2024-05-18 16:05:39,410 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-18 09:05:52] 2024-05-18 16:05:39,411 | INFO     | aborting loop
[2024-05-18 09:05:52] 2024-05-18 16:05:39,412 | INFO     | found 0 job(s) in 20 queues
[2024-05-18 09:05:52] 2024-05-18 16:05:39,412 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-18 09:05:52] 2024-05-18 16:05:39,412 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-18 09:05:52] 2024-05-18 16:05:39,550 | INFO     | all data control threads have been joined
[2024-05-18 09:05:52] 2024-05-18 16:05:40,289 | INFO     | all job control threads have been joined
[2024-05-18 09:05:52] 2024-05-18 16:05:40,318 | INFO     | all payload control threads have been joined
[2024-05-18 09:05:52] 2024-05-18 16:05:40,415 | INFO     | [job] retrieve thread has finished
[2024-05-18 09:05:52] 2024-05-18 16:05:40,417 | INFO     | [job] job monitor thread has finished
[2024-05-18 09:05:52] 2024-05-18 16:05:40,556 | INFO     | [data] control thread has finished
[2024-05-18 09:05:52] 2024-05-18 16:05:40,913 | INFO     | [job] validate thread has finished
[2024-05-18 09:05:52] 2024-05-18 16:05:40,988 | INFO     | [payload] execute_payloads thread has finished
[2024-05-18 09:05:52] 2024-05-18 16:05:41,111 | INFO     | [job] create_data_payload thread has finished
[2024-05-18 09:05:52] 2024-05-18 16:05:41,237 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-18 09:05:52] 2024-05-18 16:05:41,292 | INFO     | [job] control thread has finished
[2024-05-18 09:05:52] 2024-05-18 16:05:41,325 | INFO     | [payload] control thread has finished
[2024-05-18 09:05:52] 2024-05-18 16:05:41,405 | INFO     | [data] copytool_in thread has finished
[2024-05-18 09:05:52] 2024-05-18 16:05:41,417 | INFO     | [data] copytool_out thread has finished
[2024-05-18 09:05:52] 2024-05-18 16:05:41,512 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-18 09:05:52] 2024-05-18 16:05:41,521 | INFO     | [payload] failed_post thread has finished
[2024-05-18 09:05:52] 2024-05-18 16:05:41,553 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-18 09:05:52] 2024-05-18 16:05:41,750 | INFO     | [payload] validate_pre thread has finished
[2024-05-18 09:05:52] 2024-05-18 16:05:41,967 | INFO     | [payload] validate_post thread has finished
[2024-05-18 09:05:52] 2024-05-18 16:05:42,519 | INFO     | [job] queue monitor thread has finished
[2024-05-18 09:05:52] 2024-05-18 16:05:45,559 | INFO     | [data] queue_monitor thread has finished
[2024-05-18 09:05:52] 2024-05-18 16:05:46,751 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140158050670400)>', '<ExcThread(monitor, started 140157776807680)>']
[2024-05-18 09:05:52] 2024-05-18 16:05:47,459 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-18 09:05:52] 2024-05-18 16:05:47,459 | INFO     | [monitor] control thread has ended
[2024-05-18 09:05:52] 2024-05-18 16:05:51,778 | INFO     | all workflow threads have been joined
[2024-05-18 09:05:52] 2024-05-18 16:05:51,778 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-18 09:05:52] 2024-05-18 16:05:51,778 | INFO     | traces error code: 0
[2024-05-18 09:05:52] 2024-05-18 16:05:51,779 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-18 09:05:52] 2024-05-18 16:05:51,877 [wrapper] ==== pilot stdout END ====
[2024-05-18 09:05:52] 2024-05-18 16:05:51,881 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-18 09:05:52] 2024-05-18 16:05:51,885 [wrapper] pilotpid: 146745
[2024-05-18 09:05:52] 2024-05-18 16:05:51,889 [wrapper] Pilot exit status: 0
[2024-05-18 09:05:52] 2024-05-18 16:05:51,902 [wrapper] pandaids: 6208546762
[2024-05-18 09:05:52] 2024-05-18 16:05:51,984 [wrapper] cleanup: SIGTERM to supervisor_pilot  49465 146746
[2024-05-18 09:05:52] 2024-05-18 16:05:51,987 [wrapper] Test setup, not cleaning
[2024-05-18 09:05:52] 2024-05-18 16:05:51,990 [wrapper] ==== wrapper stdout END ====
[2024-05-18 09:05:52] 2024-05-18 16:05:51,993 [wrapper] ==== wrapper stderr END ====
[2024-05-18 09:05:52] 2024-05-18 16:05:52,000 [wrapper] apfmon messages muted
[2024-05-18 09:05:52]  *** Error codes and diagnostics ***
[2024-05-18 09:05:52]     "exeErrorCode": 0,
[2024-05-18 09:05:52]     "exeErrorDiag": "",
[2024-05-18 09:05:52]     "pilotErrorCode": 0,
[2024-05-18 09:05:52]     "pilotErrorDiag": "",
[2024-05-18 09:05:52]  *** Listing of results directory ***
[2024-05-18 09:05:52] total 834152
[2024-05-18 09:05:52] -rw-r--r-- 1 boinc boinc    467845 May 17 22:17 pilot3.tar.gz
[2024-05-18 09:05:52] -rw-r--r-- 1 boinc boinc      5633 May 17 22:20 queuedata.json
[2024-05-18 09:05:52] -rwx------ 1 boinc boinc     32251 May 17 22:21 runpilot2-wrapper.sh
[2024-05-18 09:05:52] -rw-r--r-- 1 boinc boinc       100 May 18 08:04 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-18 09:05:52] -rwxr-xr-x 1 boinc boinc      7986 May 18 08:04 run_atlas
[2024-05-18 09:05:52] -rw-r--r-- 1 boinc boinc       105 May 18 08:04 job.xml
[2024-05-18 09:05:52] -rw-r--r-- 2 boinc boinc 598907733 May 18 08:04 EVNT.38776119._000184.pool.root.1
[2024-05-18 09:05:52] -rw-r--r-- 2 boinc boinc     17537 May 18 08:04 start_atlas.sh
[2024-05-18 09:05:52] drwxrwx--x 2 boinc boinc      4096 May 18 08:04 shared
[2024-05-18 09:05:52] -rw-r--r-- 2 boinc boinc    480028 May 18 08:04 input.tar.gz
[2024-05-18 09:05:52] -rw-r--r-- 1 boinc boinc      6626 May 18 08:04 init_data.xml
[2024-05-18 09:05:52] -rw-r--r-- 1 boinc boinc         0 May 18 08:04 boinc_lockfile
[2024-05-18 09:05:52] -rw-r--r-- 1 boinc boinc      2633 May 18 08:04 pandaJob.out
[2024-05-18 09:05:52] -rw------- 1 boinc boinc       424 May 18 08:04 setup.sh.local
[2024-05-18 09:05:52] -rw------- 1 boinc boinc   1019426 May 18 08:04 agis_schedconf.cvmfs.json
[2024-05-18 09:05:52] -rw------- 1 boinc boinc         0 May 18 08:04 agis_ddmendpoints.agis.ALL.json
[2024-05-18 09:05:52] -rw------- 1 boinc boinc   1324701 May 18 08:04 cric_ddmendpoints.json
[2024-05-18 09:05:52] drwx------ 4 boinc boinc      4096 May 18 08:04 pilot3
[2024-05-18 09:05:52] -rw------- 1 boinc boinc        95 May 18 09:04 pilot_heartbeat.json
[2024-05-18 09:05:52] -rw------- 1 boinc boinc 250297401 May 18 09:04 HITS.38776125._015811.pool.root.1
[2024-05-18 09:05:52] -rw-r--r-- 1 boinc boinc       530 May 18 09:05 boinc_task_state.xml
[2024-05-18 09:05:52] -rw------- 1 boinc boinc      1053 May 18 09:05 memory_monitor_summary.json
[2024-05-18 09:05:52] -rw------- 1 boinc boinc    342829 May 18 09:05 log.38776125._015811.job.log.tgz.1
[2024-05-18 09:05:52] -rw-r--r-- 1 boinc boinc      8192 May 18 09:05 boinc_mmap_file
[2024-05-18 09:05:52] -rw-r--r-- 1 boinc boinc        27 May 18 09:05 wrapper_checkpoint.txt
[2024-05-18 09:05:52] -rw------- 1 boinc boinc      7762 May 18 09:05 heartbeat.json
[2024-05-18 09:05:52] -rw------- 1 boinc boinc      4333 May 18 09:05 pilotlog.txt
[2024-05-18 09:05:52] -rw------- 1 boinc boinc    376155 May 18 09:05 log.38776125._015811.job.log.1
[2024-05-18 09:05:52] -rw------- 1 boinc boinc       357 May 18 09:05 output.list
[2024-05-18 09:05:52] -rw-r--r-- 1 boinc boinc       620 May 18 09:05 runtime_log
[2024-05-18 09:05:52] -rw------- 1 boinc boinc    737280 May 18 09:05 result.tar.gz
[2024-05-18 09:05:52] -rw-r--r-- 1 boinc boinc     11286 May 18 09:05 runtime_log.err
[2024-05-18 09:05:52] -rw------- 1 boinc boinc       651 May 18 09:05 2b1NDmzgRS5nsSi4apGgGQJmABFKDmABFKDm4ySLDmt7RKDmMBmWKn.diag
[2024-05-18 09:05:52] -rw-r--r-- 1 boinc boinc     21674 May 18 09:05 stderr.txt
[2024-05-18 09:05:52] HITS file was successfully produced:
[2024-05-18 09:05:52] -rw------- 1 boinc boinc 250297401 May 18 09:04 shared/HITS.pool.root.1
[2024-05-18 09:05:52]  *** Contents of shared directory: ***
[2024-05-18 09:05:52] total 830524
[2024-05-18 09:05:52] -rw-r--r-- 2 boinc boinc 598907733 May 18 08:04 ATLAS.root_0
[2024-05-18 09:05:52] -rw-r--r-- 2 boinc boinc     17537 May 18 08:04 start_atlas.sh
[2024-05-18 09:05:52] -rw-r--r-- 2 boinc boinc    480028 May 18 08:04 input.tar.gz
[2024-05-18 09:05:52] -rw------- 1 boinc boinc 250297401 May 18 09:04 HITS.pool.root.1
[2024-05-18 09:05:52] -rw------- 1 boinc boinc    737280 May 18 09:05 result.tar.gz
09:05:54 (142548): run_atlas exited; CPU time 31820.812592
09:05:54 (142548): called boinc_finish(0)

</stderr_txt>
]]>

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