Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
22:01:12 (99725): wrapper (7.7.26015): starting
22:01:12 (99725): wrapper: running run_atlas (--nthreads 12)
[2024-05-18 22:01:12] Arguments: --nthreads 12
[2024-05-18 22:01:12] Threads: 12
[2024-05-18 22:01:12] Checking for CVMFS
[2024-05-18 22:01:12] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-18 22:01:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-18 22:01:12] Running cvmfs_config stat atlas.cern.ch
[2024-05-18 22:01:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-18 22:01:13] 2.10.1.0 267274 185909 168056 132901 1 172 30597721 45568000 9522 130560 0 597464703 99.733 429692336 11105 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2024-05-18 22:01:13] CVMFS is ok
[2024-05-18 22:01:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-18 22:01:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-18 22:01:13] Further information can be found at the LHC@home message board.
[2024-05-18 22:01:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-18 22:01:13] Checking for apptainer binary...
[2024-05-18 22:01:13] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-18 22:01:13] Running /usr/bin/apptainer --version
[2024-05-18 22:01:13] apptainer version 1.1.8-1.el7
[2024-05-18 22:01:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-18 22:01:15] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0041.triumf.lcg
[2024-05-18 22:01:15] apptainer works
[2024-05-18 22:01:15] Set ATHENA_PROC_NUMBER=12
[2024-05-18 22:01:15] Set ATHENA_CORE_NUMBER=12
[2024-05-18 22:01:15] Starting ATLAS job with PandaID=6208546711
[2024-05-18 22:01:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-18 22:58:48]  *** The last 200 lines of the pilot log: ***
[2024-05-18 22:58:48]  guid=3a19c479-fede-475b-88e2-1a632afc7a8e
[2024-05-18 22:58:48]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-18 22:58:48]  is_tar=False
[2024-05-18 22:58:48]  lfn=log.38776104._015906.job.log.tgz.1
[2024-05-18 22:58:48]  mtime=0
[2024-05-18 22:58:48]  protocol_id=None
[2024-05-18 22:58:48]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-18 22:58:48]  replicas=None
[2024-05-18 22:58:48]  scope=mc23_13p6TeV
[2024-05-18 22:58:48]  status=None
[2024-05-18 22:58:48]  status_code=0
[2024-05-18 22:58:48]  storage_token=
[2024-05-18 22:58:48]  surl=/home/boinc/slots/0/PanDA_Pilot-6208546711/log.38776104._015906.job.log.tgz.1
[2024-05-18 22:58:48]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7f/e9/log.38776104._015906.job.log.tgz.1
[2024-05-18 22:58:48]  workdir=None
[2024-05-18 22:58:48] ]
[2024-05-18 22:58:48] 2024-05-19 05:58:18,400 | INFO     | transferring file log.38776104._015906.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6208546711/log.38776104._015906.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-05-18 22:58:48] 2024-05-19 05:58:18,400 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6208546711/log.38776104._015906.job.log.tgz.1 /home/boinc/slots/0/log.38776104._015906.job.log.t
[2024-05-18 22:58:48] 2024-05-19 05:58:18,428 | INFO     | adding to output.list: log.38776104._015906.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7f/e9/log.38776104._015906.job.log.tg
[2024-05-18 22:58:48] 2024-05-19 05:58:18,429 | INFO     | summary of transferred files:
[2024-05-18 22:58:48] 2024-05-19 05:58:18,429 | INFO     |  -- lfn=log.38776104._015906.job.log.tgz.1, status_code=0, status=transferred
[2024-05-18 22:58:48] 2024-05-19 05:58:18,429 | INFO     | stage-out finished correctly
[2024-05-18 22:58:48] 2024-05-19 05:58:19,492 | INFO     | monitor loop #266: job 0:6208546711 is in state 'finished'
[2024-05-18 22:58:48] 2024-05-19 05:58:19,492 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 22:58:48] 2024-05-19 05:58:20,306 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-18 22:58:48] 2024-05-19 05:58:21,996 | INFO     | monitor loop #267: job 0:6208546711 is in state 'finished'
[2024-05-18 22:58:48] 2024-05-19 05:58:21,996 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 22:58:48] 2024-05-19 05:58:23,031 | INFO     | job 6208546711 has state=finished
[2024-05-18 22:58:48] 2024-05-19 05:58:23,031 | INFO     | preparing for final server update for job 6208546711 in state='finished'
[2024-05-18 22:58:48] 2024-05-19 05:58:23,032 | INFO     | this job has now completed (state=finished)
[2024-05-18 22:58:48] 2024-05-19 05:58:23,032 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-18 22:58:48] 2024-05-19 05:58:23,032 | INFO     | job 6208546711 has finished - writing final server update
[2024-05-18 22:58:48] 2024-05-19 05:58:23,033 | INFO     | total number of processed events: 400 (read)
[2024-05-18 22:58:48] 2024-05-19 05:58:23,038 | INFO     | executing command: lscpu
[2024-05-18 22:58:48] 2024-05-19 05:58:23,097 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-18 22:58:48] 2024-05-19 05:58:23,098 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-18 22:58:48] 2024-05-19 05:58:23,153 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-18 22:58:48] 2024-05-19 05:58:24,499 | INFO     | monitor loop #268: job 0:6208546711 is in state 'finished'
[2024-05-18 22:58:48] 2024-05-19 05:58:24,499 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 22:58:48] 2024-05-19 05:58:26,536 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-18 22:58:48] 2024-05-19 05:58:26,536 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6208546711/memory_monitor_summary.json (trf name=prmon)
[2024-05-18 22:58:48] 2024-05-19 05:58:26,537 | INFO     | extracted standard info from prmon json
[2024-05-18 22:58:48] 2024-05-19 05:58:26,537 | INFO     | extracted standard memory fields from prmon json
[2024-05-18 22:58:48] 2024-05-19 05:58:26,537 | WARNING  | GPU info not found in prmon json
[2024-05-18 22:58:48] 2024-05-19 05:58:26,538 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-18 22:58:48] 2024-05-19 05:58:26,538 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-18 22:58:48] 2024-05-19 05:58:26,539 | INFO     | fitting pss+swap vs Time
[2024-05-18 22:58:48] 2024-05-19 05:58:26,539 | INFO     | model: linear, x: [1716095211.0, 1716095272.0, 1716095333.0, 1716095394.0, 1716095455.0, 1716095516.0, 1716095577.0, 1716095638.0, 1716095699.0, 1716095760.0, 1716
[2024-05-18 22:58:48] 2024-05-19 05:58:26,540 | INFO     | sum of square deviations: 36465800.0
[2024-05-18 22:58:48] 2024-05-19 05:58:26,540 | INFO     | sum of deviations: 15713864984.0
[2024-05-18 22:58:48] 2024-05-19 05:58:26,540 | INFO     | mean x: 1716096675.0
[2024-05-18 22:58:48] 2024-05-19 05:58:26,540 | INFO     | mean y: 2543724.8571428573
[2024-05-18 22:58:48] 2024-05-19 05:58:26,540 | INFO     | -- intersect: -739498891878.9504
[2024-05-18 22:58:48] 2024-05-19 05:58:26,540 | INFO     | intersect: -739498891878.9504
[2024-05-18 22:58:48] 2024-05-19 05:58:26,540 | INFO     | chi2: 1.592584645288294
[2024-05-18 22:58:48] 2024-05-19 05:58:26,540 | INFO     | -- intersect: -739498891878.9504
[2024-05-18 22:58:48] 2024-05-19 05:58:26,540 | INFO     | current memory leak: 430.92 B/s (using 49 data points, chi2=1.59)
[2024-05-18 22:58:48] 2024-05-19 05:58:26,541 | INFO     | ..............................
[2024-05-18 22:58:48] 2024-05-19 05:58:26,541 | INFO     | . Timing measurements:
[2024-05-18 22:58:48] 2024-05-19 05:58:26,541 | INFO     | . get job = 0 s
[2024-05-18 22:58:48] 2024-05-19 05:58:26,541 | INFO     | . initial setup = 1 s
[2024-05-18 22:58:48] 2024-05-19 05:58:26,541 | INFO     | . payload setup = 4 s
[2024-05-18 22:58:48] 2024-05-19 05:58:26,541 | INFO     | . stage-in = 0 s
[2024-05-18 22:58:48] 2024-05-19 05:58:26,541 | INFO     | . payload execution = 3391 s
[2024-05-18 22:58:48] 2024-05-19 05:58:26,541 | INFO     | . stage-out = 0 s
[2024-05-18 22:58:48] 2024-05-19 05:58:26,541 | INFO     | . log creation = 0 s
[2024-05-18 22:58:48] 2024-05-19 05:58:26,541 | INFO     | ..............................
[2024-05-18 22:58:48] 2024-05-19 05:58:26,607 | INFO     | 
[2024-05-18 22:58:48] 2024-05-19 05:58:26,607 | INFO     | job summary report
[2024-05-18 22:58:48] 2024-05-19 05:58:26,607 | INFO     | --------------------------------------------------
[2024-05-18 22:58:48] 2024-05-19 05:58:26,607 | INFO     | PanDA job id: 6208546711
[2024-05-18 22:58:48] 2024-05-19 05:58:26,608 | INFO     | task id: 38776104
[2024-05-18 22:58:48] 2024-05-19 05:58:26,608 | INFO     | errors: (none)
[2024-05-18 22:58:48] 2024-05-19 05:58:26,608 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-18 22:58:48] 2024-05-19 05:58:26,608 | INFO     | pilot state: finished 
[2024-05-18 22:58:48] 2024-05-19 05:58:26,608 | INFO     | transexitcode: 0
[2024-05-18 22:58:48] 2024-05-19 05:58:26,608 | INFO     | exeerrorcode: 0
[2024-05-18 22:58:48] 2024-05-19 05:58:26,608 | INFO     | exeerrordiag: 
[2024-05-18 22:58:48] 2024-05-19 05:58:26,608 | INFO     | exitcode: 0
[2024-05-18 22:58:48] 2024-05-19 05:58:26,608 | INFO     | exitmsg: OK
[2024-05-18 22:58:48] 2024-05-19 05:58:26,608 | INFO     | cpuconsumptiontime: 28916 s
[2024-05-18 22:58:48] 2024-05-19 05:58:26,608 | INFO     | nevents: 400
[2024-05-18 22:58:48] 2024-05-19 05:58:26,608 | INFO     | neventsw: 0
[2024-05-18 22:58:48] 2024-05-19 05:58:26,608 | INFO     | pid: 110281
[2024-05-18 22:58:48] 2024-05-19 05:58:26,608 | INFO     | pgrp: 110281
[2024-05-18 22:58:48] 2024-05-19 05:58:26,609 | INFO     | corecount: 12
[2024-05-18 22:58:48] 2024-05-19 05:58:26,609 | INFO     | event service: False
[2024-05-18 22:58:48] 2024-05-19 05:58:26,609 | INFO     | sizes: {0: 2392204, 3: 2392410, 11: 2392438, 3399: 2417976, 3400: 2426930, 3402: 2426986, 3408: 2427284}
[2024-05-18 22:58:48] 2024-05-19 05:58:26,609 | INFO     | --------------------------------------------------
[2024-05-18 22:58:48] 2024-05-19 05:58:26,609 | INFO     | 
[2024-05-18 22:58:48] 2024-05-19 05:58:26,609 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-18 22:58:48] 2024-05-19 05:58:26,639 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-18 22:58:48] 2024-05-19 05:58:26,640 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-18 22:58:48] 2024-05-19 05:58:26,640 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-18 22:58:48] 2024-05-19 05:58:26,640 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-18 22:58:48] 2024-05-19 05:58:26,640 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-18 22:58:48] 2024-05-19 05:58:26,640 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-18 22:58:48] 2024-05-19 05:58:26,641 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-18 22:58:48] 2024-05-19 05:58:26,641 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-18 22:58:48] 2024-05-19 05:58:26,641 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-18 22:58:48] 2024-05-19 05:58:26,641 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-18 22:58:48] 2024-05-19 05:58:26,641 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-18 22:58:48] 2024-05-19 05:58:26,641 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-18 22:58:48] 2024-05-19 05:58:26,641 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-18 22:58:48] 2024-05-19 05:58:26,641 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-18 22:58:48] 2024-05-19 05:58:26,641 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-18 22:58:48] 2024-05-19 05:58:26,641 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-18 22:58:48] 2024-05-19 05:58:26,642 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-18 22:58:48] 2024-05-19 05:58:26,642 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-18 22:58:48] 2024-05-19 05:58:26,642 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-18 22:58:48] 2024-05-19 05:58:26,642 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-18 22:58:48] 2024-05-19 05:58:26,642 | INFO     | job 6208546711 has completed (purged errors)
[2024-05-18 22:58:48] 2024-05-19 05:58:26,642 | INFO     | overall cleanup function is called
[2024-05-18 22:58:48] 2024-05-19 05:58:27,651 | INFO     | --- collectZombieJob: --- 10, [110281]
[2024-05-18 22:58:48] 2024-05-19 05:58:27,651 | INFO     | zombie collector waiting for pid 110281
[2024-05-18 22:58:48] 2024-05-19 05:58:27,651 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-18 22:58:48] 2024-05-19 05:58:28,657 | INFO     | collected zombie processes
[2024-05-18 22:58:48] 2024-05-19 05:58:28,657 | INFO     | will now attempt to kill all subprocesses of pid=110281
[2024-05-18 22:58:48] 2024-05-19 05:58:28,782 | INFO     | process IDs to be killed: [110281] (in reverse order)
[2024-05-18 22:58:48] 2024-05-19 05:58:28,888 | WARNING  | found no corresponding commands to process id(s)
[2024-05-18 22:58:48] 2024-05-19 05:58:28,888 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-18 22:58:48] 2024-05-19 05:58:28,896 | INFO     | did not find any defunct processes belonging to 110281
[2024-05-18 22:58:48] 2024-05-19 05:58:28,903 | INFO     | did not find any defunct processes belonging to 110281
[2024-05-18 22:58:48] 2024-05-19 05:58:28,903 | INFO     | ready for new job
[2024-05-18 22:58:48] 2024-05-19 05:58:28,903 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-18 22:58:48] 2024-05-19 05:58:28,905 | INFO     | *************************************
[2024-05-18 22:58:48] 2024-05-19 05:58:28,905 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-18 22:58:48] 2024-05-19 05:58:28,905 | INFO     | *************************************
[2024-05-18 22:58:48] 2024-05-19 05:58:28,906 | INFO     | 
[2024-05-18 22:58:48] 2024-05-19 05:58:28,910 | INFO     | architecture information:
[2024-05-18 22:58:48] 2024-05-19 05:58:28,910 | INFO     | executing command: cat /etc/os-release
[2024-05-18 22:58:48] 2024-05-19 05:58:28,931 | INFO     | cat /etc/os-release:
[2024-05-18 22:58:48] NAME="CentOS Linux"
[2024-05-18 22:58:48] VERSION="7 (Core)"
[2024-05-18 22:58:48] ID="centos"
[2024-05-18 22:58:48] ID_LIKE="rhel fedora"
[2024-05-18 22:58:48] VERSION_ID="7"
[2024-05-18 22:58:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-18 22:58:48] ANSI_COLOR="0;31"
[2024-05-18 22:58:48] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-18 22:58:48] HOME_URL="https://www.centos.org/"
[2024-05-18 22:58:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-18 22:58:48] 
[2024-05-18 22:58:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-18 22:58:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-18 22:58:48] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-18 22:58:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-18 22:58:48] 
[2024-05-18 22:58:48] 2024-05-19 05:58:28,931 | INFO     | *************************************
[2024-05-18 22:58:48] 2024-05-19 05:58:29,434 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-18 22:58:48] 2024-05-19 05:58:29,463 | INFO     | sufficient remaining disk space (2079388073984 B)
[2024-05-18 22:58:48] 2024-05-19 05:58:29,464 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-18 22:58:48] 2024-05-19 05:58:29,464 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-18 22:58:48] 2024-05-19 05:58:29,465 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-18 22:58:48] 2024-05-19 05:58:29,510 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2024-05-18 22:58:48] 2024-05-19 05:58:29,510 | WARNING  | cannot recover job monitoring - aborting pilot
[2024-05-18 22:58:48] 2024-05-19 05:58:29,511 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-18 22:58:48] 2024-05-19 05:58:29,511 | INFO     | will abort loop
[2024-05-18 22:58:48] 2024-05-19 05:58:29,638 | INFO     | all data control threads have been joined
[2024-05-18 22:58:48] 2024-05-19 05:58:29,888 | INFO     | all job control threads have been joined
[2024-05-18 22:58:48] 2024-05-19 05:58:30,440 | INFO     | found 0 job(s) in 20 queues
[2024-05-18 22:58:48] 2024-05-19 05:58:30,440 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-18 22:58:48] 2024-05-19 05:58:30,440 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-18 22:58:48] 2024-05-19 05:58:30,466 | INFO     | [job] retrieve thread has finished
[2024-05-18 22:58:48] 2024-05-19 05:58:30,511 | INFO     | [job] job monitor thread has finished
[2024-05-18 22:58:48] 2024-05-19 05:58:30,528 | INFO     | [payload] execute_payloads thread has finished
[2024-05-18 22:58:48] 2024-05-19 05:58:30,639 | INFO     | [data] control thread has finished
[2024-05-18 22:58:48] 2024-05-19 05:58:30,645 | INFO     | all payload control threads have been joined
[2024-05-18 22:58:48] 2024-05-19 05:58:30,889 | INFO     | [job] control thread has finished
[2024-05-18 22:58:48] 2024-05-19 05:58:30,903 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-18 22:58:48] 2024-05-19 05:58:31,201 | INFO     | [job] validate thread has finished
[2024-05-18 22:58:48] 2024-05-19 05:58:31,270 | INFO     | [payload] failed_post thread has finished
[2024-05-18 22:58:48] 2024-05-19 05:58:31,413 | INFO     | [payload] validate_post thread has finished
[2024-05-18 22:58:48] 2024-05-19 05:58:31,471 | INFO     | [data] copytool_out thread has finished
[2024-05-18 22:58:48] 2024-05-19 05:58:31,618 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-18 22:58:48] 2024-05-19 05:58:31,629 | INFO     | [payload] validate_pre thread has finished
[2024-05-18 22:58:48] 2024-05-19 05:58:31,640 | INFO     | [job] create_data_payload thread has finished
[2024-05-18 22:58:48] 2024-05-19 05:58:31,651 | INFO     | [payload] control thread has finished
[2024-05-18 22:58:48] 2024-05-19 05:58:31,688 | INFO     | [data] copytool_in thread has finished
[2024-05-18 22:58:48] 2024-05-19 05:58:32,625 | INFO     | [job] queue monitor thread has finished
[2024-05-18 22:58:48] 2024-05-19 05:58:34,909 | INFO     | [data] queue_monitor thread has finished
[2024-05-18 22:58:48] 2024-05-19 05:58:39,689 | INFO     | job.realtimelogging is not enabled
[2024-05-18 22:58:48] 2024-05-19 05:58:40,695 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-18 22:58:48] 2024-05-19 05:58:42,624 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140424182146880)>', '<ExcThread(monitor, started 140423969425152)>']
[2024-05-18 22:58:48] 2024-05-19 05:58:43,500 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-18 22:58:48] 2024-05-19 05:58:43,500 | INFO     | [monitor] control thread has ended
[2024-05-18 22:58:48] 2024-05-19 05:58:47,649 | INFO     | all workflow threads have been joined
[2024-05-18 22:58:48] 2024-05-19 05:58:47,649 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-18 22:58:48] 2024-05-19 05:58:47,650 | INFO     | traces error code: 0
[2024-05-18 22:58:48] 2024-05-19 05:58:47,650 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-18 22:58:48] 2024-05-19 05:58:47,754 [wrapper] ==== pilot stdout END ====
[2024-05-18 22:58:48] 2024-05-19 05:58:47,758 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-18 22:58:48] 2024-05-19 05:58:47,762 [wrapper] pilotpid: 103865
[2024-05-18 22:58:48] 2024-05-19 05:58:47,766 [wrapper] Pilot exit status: 0
[2024-05-18 22:58:48] 2024-05-19 05:58:47,777 [wrapper] pandaids: 6208546711
[2024-05-18 22:58:48] 2024-05-19 05:58:47,843 [wrapper] cleanup: SIGTERM to supervisor_pilot 186681 103866
[2024-05-18 22:58:48] 2024-05-19 05:58:47,846 [wrapper] Test setup, not cleaning
[2024-05-18 22:58:48] 2024-05-19 05:58:47,849 [wrapper] ==== wrapper stdout END ====
[2024-05-18 22:58:48] 2024-05-19 05:58:47,852 [wrapper] ==== wrapper stderr END ====
[2024-05-18 22:58:48] 2024-05-19 05:58:47,858 [wrapper] apfmon messages muted
[2024-05-18 22:58:48]  *** Error codes and diagnostics ***
[2024-05-18 22:58:48]     "exeErrorCode": 0,
[2024-05-18 22:58:48]     "exeErrorDiag": "",
[2024-05-18 22:58:48]     "pilotErrorCode": 0,
[2024-05-18 22:58:48]     "pilotErrorDiag": "",
[2024-05-18 22:58:48]  *** Listing of results directory ***
[2024-05-18 22:58:48] total 820532
[2024-05-18 22:58:48] -rw-r--r-- 1 boinc boinc    467845 May 17 21:42 pilot3.tar.gz
[2024-05-18 22:58:48] -rwx------ 1 boinc boinc     32251 May 17 22:13 runpilot2-wrapper.sh
[2024-05-18 22:58:48] -rw-r--r-- 1 boinc boinc      5633 May 17 22:13 queuedata.json
[2024-05-18 22:58:48] -rw-r--r-- 1 boinc boinc       100 May 18 22:01 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-18 22:58:48] -rwxr-xr-x 1 boinc boinc      7986 May 18 22:01 run_atlas
[2024-05-18 22:58:48] -rw-r--r-- 1 boinc boinc       105 May 18 22:01 job.xml
[2024-05-18 22:58:48] -rw-r--r-- 1 boinc boinc      6627 May 18 22:01 init_data.xml
[2024-05-18 22:58:48] -rw-r--r-- 2 boinc boinc 602063377 May 18 22:01 EVNT.38776100._000520.pool.root.1
[2024-05-18 22:58:48] -rw-r--r-- 2 boinc boinc     17537 May 18 22:01 start_atlas.sh
[2024-05-18 22:58:48] drwxrwx--x 2 boinc boinc      4096 May 18 22:01 shared
[2024-05-18 22:58:48] -rw-r--r-- 2 boinc boinc    480005 May 18 22:01 input.tar.gz
[2024-05-18 22:58:48] -rw-r--r-- 1 boinc boinc         0 May 18 22:01 boinc_lockfile
[2024-05-18 22:58:48] -rw-r--r-- 1 boinc boinc      2644 May 18 22:01 pandaJob.out
[2024-05-18 22:58:48] -rw------- 1 boinc boinc       424 May 18 22:01 setup.sh.local
[2024-05-18 22:58:48] -rw------- 1 boinc boinc   1013987 May 18 22:01 agis_schedconf.cvmfs.json
[2024-05-18 22:58:48] -rw------- 1 boinc boinc         0 May 18 22:01 agis_ddmendpoints.agis.ALL.json
[2024-05-18 22:58:48] -rw------- 1 boinc boinc   1324701 May 18 22:01 cric_ddmendpoints.json
[2024-05-18 22:58:48] drwx------ 4 boinc boinc      4096 May 18 22:01 pilot3
[2024-05-18 22:58:48] -rw------- 1 boinc boinc 233238231 May 18 22:57 HITS.38776104._015906.pool.root.1
[2024-05-18 22:58:48] -rw-r--r-- 1 boinc boinc       530 May 18 22:57 boinc_task_state.xml
[2024-05-18 22:58:48] -rw------- 1 boinc boinc      1051 May 18 22:58 memory_monitor_summary.json
[2024-05-18 22:58:48] -rw------- 1 boinc boinc    346688 May 18 22:58 log.38776104._015906.job.log.tgz.1
[2024-05-18 22:58:48] -rw------- 1 boinc boinc      7780 May 18 22:58 heartbeat.json
[2024-05-18 22:58:48] -rw------- 1 boinc boinc        95 May 18 22:58 pilot_heartbeat.json
[2024-05-18 22:58:48] -rw------- 1 boinc boinc      4468 May 18 22:58 pilotlog.txt
[2024-05-18 22:58:48] -rw-r--r-- 1 boinc boinc      8192 May 18 22:58 boinc_mmap_file
[2024-05-18 22:58:48] -rw------- 1 boinc boinc    348959 May 18 22:58 log.38776104._015906.job.log.1
[2024-05-18 22:58:48] -rw------- 1 boinc boinc       357 May 18 22:58 output.list
[2024-05-18 22:58:48] -rw-r--r-- 1 boinc boinc       620 May 18 22:58 runtime_log
[2024-05-18 22:58:48] -rw------- 1 boinc boinc    716800 May 18 22:58 result.tar.gz
[2024-05-18 22:58:48] -rw-r--r-- 1 boinc boinc     11286 May 18 22:58 runtime_log.err
[2024-05-18 22:58:48] -rw------- 1 boinc boinc       653 May 18 22:58 O7iKDmfYRS5nsSi4apGgGQJmABFKDmABFKDm4ySLDmG7RKDmgyc6Xo.diag
[2024-05-18 22:58:48] -rw-r--r-- 1 boinc boinc        27 May 18 22:58 wrapper_checkpoint.txt
[2024-05-18 22:58:48] -rw-r--r-- 1 boinc boinc     21760 May 18 22:58 stderr.txt
[2024-05-18 22:58:48] HITS file was successfully produced:
[2024-05-18 22:58:48] -rw------- 1 boinc boinc 233238231 May 18 22:57 shared/HITS.pool.root.1
[2024-05-18 22:58:48]  *** Contents of shared directory: ***
[2024-05-18 22:58:48] total 816928
[2024-05-18 22:58:48] -rw-r--r-- 2 boinc boinc 602063377 May 18 22:01 ATLAS.root_0
[2024-05-18 22:58:48] -rw-r--r-- 2 boinc boinc     17537 May 18 22:01 start_atlas.sh
[2024-05-18 22:58:48] -rw-r--r-- 2 boinc boinc    480005 May 18 22:01 input.tar.gz
[2024-05-18 22:58:48] -rw------- 1 boinc boinc 233238231 May 18 22:57 HITS.pool.root.1
[2024-05-18 22:58:48] -rw------- 1 boinc boinc    716800 May 18 22:58 result.tar.gz
22:58:50 (99725): run_atlas exited; CPU time 28710.582806
22:58:50 (99725): called boinc_finish(0)

</stderr_txt>
]]>

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