Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
21:40:39 (273932): wrapper (7.7.26015): starting
21:40:39 (273932): wrapper: running run_atlas (--nthreads 12)
[2024-05-18 21:40:39] Arguments: --nthreads 12
[2024-05-18 21:40:39] Threads: 12
[2024-05-18 21:40:39] Checking for CVMFS
[2024-05-18 21:40:39] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-18 21:40:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-18 21:40:39] Running cvmfs_config stat atlas.cern.ch
[2024-05-18 21:40:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-18 21:40:39] 2.10.1.0 136058 185888 186600 132901 0 164 29601298 45568001 5830 130560 0 600180127 99.725 424967315 13862 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2024-05-18 21:40:39] CVMFS is ok
[2024-05-18 21:40:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-18 21:40:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-18 21:40:39] Further information can be found at the LHC@home message board.
[2024-05-18 21:40:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-18 21:40:39] Checking for apptainer binary...
[2024-05-18 21:40:39] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-18 21:40:39] Running /usr/bin/apptainer --version
[2024-05-18 21:40:39] apptainer version 1.1.8-1.el7
[2024-05-18 21:40:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-18 21:40:40] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0039.triumf.lcg
[2024-05-18 21:40:40] apptainer works
[2024-05-18 21:40:40] Set ATHENA_PROC_NUMBER=12
[2024-05-18 21:40:40] Set ATHENA_CORE_NUMBER=12
[2024-05-18 21:40:40] Starting ATLAS job with PandaID=6208546668
[2024-05-18 21:40:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-18 22:34:18]  *** The last 200 lines of the pilot log: ***
[2024-05-18 22:34:18]  filetype=log
[2024-05-18 22:34:18]  guid=4528f2f2-2557-4b22-9e51-6aed0824baf5
[2024-05-18 22:34:18]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-18 22:34:18]  is_tar=False
[2024-05-18 22:34:18]  lfn=log.38776104._015863.job.log.tgz.1
[2024-05-18 22:34:18]  mtime=0
[2024-05-18 22:34:18]  protocol_id=None
[2024-05-18 22:34:18]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-18 22:34:18]  replicas=None
[2024-05-18 22:34:18]  scope=mc23_13p6TeV
[2024-05-18 22:34:18]  status=None
[2024-05-18 22:34:18]  status_code=0
[2024-05-18 22:34:18]  storage_token=
[2024-05-18 22:34:18]  surl=/home/boinc/slots/0/PanDA_Pilot-6208546668/log.38776104._015863.job.log.tgz.1
[2024-05-18 22:34:18]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bd/8e/log.38776104._015863.job.log.tgz.1
[2024-05-18 22:34:18]  workdir=None
[2024-05-18 22:34:18] ]
[2024-05-18 22:34:18] 2024-05-19 05:33:53,634 | INFO     | transferring file log.38776104._015863.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6208546668/log.38776104._015863.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-05-18 22:34:18] 2024-05-19 05:33:53,634 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6208546668/log.38776104._015863.job.log.tgz.1 /home/boinc/slots/0/log.38776104._015863.job.log.t
[2024-05-18 22:34:18] 2024-05-19 05:33:53,663 | INFO     | adding to output.list: log.38776104._015863.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bd/8e/log.38776104._015863.job.log.tg
[2024-05-18 22:34:18] 2024-05-19 05:33:53,664 | INFO     | summary of transferred files:
[2024-05-18 22:34:18] 2024-05-19 05:33:53,664 | INFO     |  -- lfn=log.38776104._015863.job.log.tgz.1, status_code=0, status=transferred
[2024-05-18 22:34:18] 2024-05-19 05:33:53,665 | INFO     | stage-out finished correctly
[2024-05-18 22:34:18] 2024-05-19 05:33:55,360 | INFO     | monitor loop #253: job 0:6208546668 is in state 'finished'
[2024-05-18 22:34:18] 2024-05-19 05:33:55,360 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 22:34:18] 2024-05-19 05:33:56,225 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-18 22:34:18] 2024-05-19 05:33:57,580 | INFO     | job 6208546668 has state=finished
[2024-05-18 22:34:18] 2024-05-19 05:33:57,580 | INFO     | preparing for final server update for job 6208546668 in state='finished'
[2024-05-18 22:34:18] 2024-05-19 05:33:57,863 | INFO     | monitor loop #254: job 0:6208546668 is in state 'finished'
[2024-05-18 22:34:18] 2024-05-19 05:33:57,864 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 22:34:18] 2024-05-19 05:33:57,892 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2024-05-18 22:34:18] 2024-05-19 05:33:57,892 | INFO     | this job has now completed (state=finished)
[2024-05-18 22:34:18] 2024-05-19 05:33:57,892 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-18 22:34:18] 2024-05-19 05:33:57,893 | INFO     | job 6208546668 has finished - writing final server update
[2024-05-18 22:34:18] 2024-05-19 05:33:57,893 | INFO     | total number of processed events: 400 (read)
[2024-05-18 22:34:18] 2024-05-19 05:33:57,900 | INFO     | executing command: lscpu
[2024-05-18 22:34:18] 2024-05-19 05:33:57,970 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-18 22:34:18] 2024-05-19 05:33:57,971 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-18 22:34:18] 2024-05-19 05:33:58,024 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-18 22:34:18] 2024-05-19 05:34:00,365 | INFO     | monitor loop #255: job 0:6208546668 is in state 'finished'
[2024-05-18 22:34:18] 2024-05-19 05:34:00,366 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 22:34:18] 2024-05-19 05:34:01,374 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-18 22:34:18] 2024-05-19 05:34:01,375 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6208546668/memory_monitor_summary.json (trf name=prmon)
[2024-05-18 22:34:18] 2024-05-19 05:34:01,375 | INFO     | extracted standard info from prmon json
[2024-05-18 22:34:18] 2024-05-19 05:34:01,376 | INFO     | extracted standard memory fields from prmon json
[2024-05-18 22:34:18] 2024-05-19 05:34:01,376 | WARNING  | GPU info not found in prmon json
[2024-05-18 22:34:18] 2024-05-19 05:34:01,376 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-18 22:34:18] 2024-05-19 05:34:01,376 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-18 22:34:18] 2024-05-19 05:34:01,377 | INFO     | fitting pss+swap vs Time
[2024-05-18 22:34:18] 2024-05-19 05:34:01,377 | INFO     | model: linear, x: [1716093977.0, 1716094038.0, 1716094099.0, 1716094160.0, 1716094221.0, 1716094282.0, 1716094343.0, 1716094404.0, 1716094465.0, 1716094526.0, 1716
[2024-05-18 22:34:18] 2024-05-19 05:34:01,378 | INFO     | sum of square deviations: 28242390.0
[2024-05-18 22:34:18] 2024-05-19 05:34:01,378 | INFO     | sum of deviations: 12007974196.0
[2024-05-18 22:34:18] 2024-05-19 05:34:01,378 | INFO     | mean x: 1716095319.0
[2024-05-18 22:34:18] 2024-05-19 05:34:01,378 | INFO     | mean y: 2605331.0
[2024-05-18 22:34:18] 2024-05-19 05:34:01,378 | INFO     | -- intersect: -729639195820.6868
[2024-05-18 22:34:18] 2024-05-19 05:34:01,378 | INFO     | intersect: -729639195820.6868
[2024-05-18 22:34:18] 2024-05-19 05:34:01,378 | INFO     | chi2: 2.1479561390567454
[2024-05-18 22:34:18] 2024-05-19 05:34:01,378 | INFO     | -- intersect: -729639195820.6868
[2024-05-18 22:34:18] 2024-05-19 05:34:01,378 | INFO     | current memory leak: 425.18 B/s (using 45 data points, chi2=2.15)
[2024-05-18 22:34:18] 2024-05-19 05:34:01,379 | INFO     | ..............................
[2024-05-18 22:34:18] 2024-05-19 05:34:01,379 | INFO     | . Timing measurements:
[2024-05-18 22:34:18] 2024-05-19 05:34:01,379 | INFO     | . get job = 0 s
[2024-05-18 22:34:18] 2024-05-19 05:34:01,379 | INFO     | . initial setup = 2 s
[2024-05-18 22:34:18] 2024-05-19 05:34:01,379 | INFO     | . payload setup = 4 s
[2024-05-18 22:34:18] 2024-05-19 05:34:01,379 | INFO     | . stage-in = 0 s
[2024-05-18 22:34:18] 2024-05-19 05:34:01,379 | INFO     | . payload execution = 3160 s
[2024-05-18 22:34:18] 2024-05-19 05:34:01,379 | INFO     | . stage-out = 0 s
[2024-05-18 22:34:18] 2024-05-19 05:34:01,379 | INFO     | . log creation = 0 s
[2024-05-18 22:34:18] 2024-05-19 05:34:01,379 | INFO     | ..............................
[2024-05-18 22:34:18] 2024-05-19 05:34:01,940 | INFO     | 
[2024-05-18 22:34:18] 2024-05-19 05:34:01,941 | INFO     | job summary report
[2024-05-18 22:34:18] 2024-05-19 05:34:01,941 | INFO     | --------------------------------------------------
[2024-05-18 22:34:18] 2024-05-19 05:34:01,941 | INFO     | PanDA job id: 6208546668
[2024-05-18 22:34:18] 2024-05-19 05:34:01,941 | INFO     | task id: 38776104
[2024-05-18 22:34:18] 2024-05-19 05:34:01,941 | INFO     | errors: (none)
[2024-05-18 22:34:18] 2024-05-19 05:34:01,941 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-18 22:34:18] 2024-05-19 05:34:01,941 | INFO     | pilot state: finished 
[2024-05-18 22:34:18] 2024-05-19 05:34:01,942 | INFO     | transexitcode: 0
[2024-05-18 22:34:18] 2024-05-19 05:34:01,942 | INFO     | exeerrorcode: 0
[2024-05-18 22:34:18] 2024-05-19 05:34:01,942 | INFO     | exeerrordiag: 
[2024-05-18 22:34:18] 2024-05-19 05:34:01,942 | INFO     | exitcode: 0
[2024-05-18 22:34:18] 2024-05-19 05:34:01,942 | INFO     | exitmsg: OK
[2024-05-18 22:34:18] 2024-05-19 05:34:01,942 | INFO     | cpuconsumptiontime: 26839 s
[2024-05-18 22:34:18] 2024-05-19 05:34:01,942 | INFO     | nevents: 400
[2024-05-18 22:34:18] 2024-05-19 05:34:01,942 | INFO     | neventsw: 0
[2024-05-18 22:34:18] 2024-05-19 05:34:01,942 | INFO     | pid: 6357
[2024-05-18 22:34:18] 2024-05-19 05:34:01,943 | INFO     | pgrp: 6357
[2024-05-18 22:34:18] 2024-05-19 05:34:01,943 | INFO     | corecount: 12
[2024-05-18 22:34:18] 2024-05-19 05:34:01,943 | INFO     | event service: False
[2024-05-18 22:34:18] 2024-05-19 05:34:01,943 | INFO     | sizes: {0: 2392154, 4: 2392360, 11: 2392388, 3168: 2417946, 3169: 2426900, 3172: 2426956, 3177: 2427254}
[2024-05-18 22:34:18] 2024-05-19 05:34:01,943 | INFO     | --------------------------------------------------
[2024-05-18 22:34:18] 2024-05-19 05:34:01,943 | INFO     | 
[2024-05-18 22:34:18] 2024-05-19 05:34:01,943 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-18 22:34:18] 2024-05-19 05:34:01,977 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-18 22:34:18] 2024-05-19 05:34:01,977 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-18 22:34:18] 2024-05-19 05:34:01,977 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-18 22:34:18] 2024-05-19 05:34:01,977 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-18 22:34:18] 2024-05-19 05:34:01,978 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-18 22:34:18] 2024-05-19 05:34:01,978 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-18 22:34:18] 2024-05-19 05:34:01,978 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-18 22:34:18] 2024-05-19 05:34:01,978 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-18 22:34:18] 2024-05-19 05:34:01,978 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-18 22:34:18] 2024-05-19 05:34:01,978 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-18 22:34:18] 2024-05-19 05:34:01,978 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-18 22:34:18] 2024-05-19 05:34:01,978 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-18 22:34:18] 2024-05-19 05:34:01,979 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-18 22:34:18] 2024-05-19 05:34:01,979 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-18 22:34:18] 2024-05-19 05:34:01,979 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-18 22:34:18] 2024-05-19 05:34:01,979 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-18 22:34:18] 2024-05-19 05:34:01,979 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-18 22:34:18] 2024-05-19 05:34:01,979 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-18 22:34:18] 2024-05-19 05:34:01,979 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-18 22:34:18] 2024-05-19 05:34:01,979 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-18 22:34:18] 2024-05-19 05:34:01,980 | INFO     | job 6208546668 has completed (purged errors)
[2024-05-18 22:34:18] 2024-05-19 05:34:01,980 | INFO     | overall cleanup function is called
[2024-05-18 22:34:18] 2024-05-19 05:34:02,989 | INFO     | --- collectZombieJob: --- 10, [6357]
[2024-05-18 22:34:18] 2024-05-19 05:34:02,989 | INFO     | zombie collector waiting for pid 6357
[2024-05-18 22:34:18] 2024-05-19 05:34:02,990 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-18 22:34:18] 2024-05-19 05:34:03,995 | INFO     | collected zombie processes
[2024-05-18 22:34:18] 2024-05-19 05:34:03,995 | INFO     | will now attempt to kill all subprocesses of pid=6357
[2024-05-18 22:34:18] 2024-05-19 05:34:04,122 | INFO     | process IDs to be killed: [6357] (in reverse order)
[2024-05-18 22:34:18] 2024-05-19 05:34:04,237 | WARNING  | found no corresponding commands to process id(s)
[2024-05-18 22:34:18] 2024-05-19 05:34:04,238 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-18 22:34:18] 2024-05-19 05:34:04,246 | INFO     | did not find any defunct processes belonging to 6357
[2024-05-18 22:34:18] 2024-05-19 05:34:04,252 | INFO     | did not find any defunct processes belonging to 6357
[2024-05-18 22:34:18] 2024-05-19 05:34:04,253 | INFO     | ready for new job
[2024-05-18 22:34:18] 2024-05-19 05:34:04,253 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-18 22:34:18] 2024-05-19 05:34:04,255 | INFO     | *************************************
[2024-05-18 22:34:18] 2024-05-19 05:34:04,256 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-18 22:34:18] 2024-05-19 05:34:04,256 | INFO     | *************************************
[2024-05-18 22:34:18] 2024-05-19 05:34:04,256 | INFO     | 
[2024-05-18 22:34:18] 2024-05-19 05:34:04,260 | INFO     | architecture information:
[2024-05-18 22:34:18] 2024-05-19 05:34:04,260 | INFO     | executing command: cat /etc/os-release
[2024-05-18 22:34:18] 2024-05-19 05:34:04,285 | INFO     | cat /etc/os-release:
[2024-05-18 22:34:18] NAME="CentOS Linux"
[2024-05-18 22:34:18] VERSION="7 (Core)"
[2024-05-18 22:34:18] ID="centos"
[2024-05-18 22:34:18] ID_LIKE="rhel fedora"
[2024-05-18 22:34:18] VERSION_ID="7"
[2024-05-18 22:34:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-18 22:34:18] ANSI_COLOR="0;31"
[2024-05-18 22:34:18] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-18 22:34:18] HOME_URL="https://www.centos.org/"
[2024-05-18 22:34:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-18 22:34:18] 
[2024-05-18 22:34:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-18 22:34:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-18 22:34:18] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-18 22:34:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-18 22:34:18] 
[2024-05-18 22:34:18] 2024-05-19 05:34:04,285 | INFO     | *************************************
[2024-05-18 22:34:18] 2024-05-19 05:34:04,788 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-18 22:34:18] 2024-05-19 05:34:04,816 | INFO     | sufficient remaining disk space (2106650001408 B)
[2024-05-18 22:34:18] 2024-05-19 05:34:04,817 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-18 22:34:18] 2024-05-19 05:34:04,817 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-18 22:34:18] 2024-05-19 05:34:04,818 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-18 22:34:18] 2024-05-19 05:34:04,818 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-18 22:34:18] 2024-05-19 05:34:04,818 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-18 22:34:18] 2024-05-19 05:34:04,819 | INFO     | aborting loop
[2024-05-18 22:34:18] 2024-05-19 05:34:04,819 | INFO     | found 0 job(s) in 20 queues
[2024-05-18 22:34:18] 2024-05-19 05:34:04,820 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-18 22:34:18] 2024-05-19 05:34:04,820 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-18 22:34:18] 2024-05-19 05:34:04,855 | INFO     | all payload control threads have been joined
[2024-05-18 22:34:18] 2024-05-19 05:34:05,255 | INFO     | all data control threads have been joined
[2024-05-18 22:34:18] 2024-05-19 05:34:05,360 | INFO     | all job control threads have been joined
[2024-05-18 22:34:18] 2024-05-19 05:34:05,823 | INFO     | [job] retrieve thread has finished
[2024-05-18 22:34:18] 2024-05-19 05:34:05,825 | INFO     | [job] job monitor thread has finished
[2024-05-18 22:34:18] 2024-05-19 05:34:05,861 | INFO     | [payload] control thread has finished
[2024-05-18 22:34:18] 2024-05-19 05:34:06,149 | INFO     | [job] validate thread has finished
[2024-05-18 22:34:18] 2024-05-19 05:34:06,176 | INFO     | [job] create_data_payload thread has finished
[2024-05-18 22:34:18] 2024-05-19 05:34:06,261 | INFO     | [data] control thread has finished
[2024-05-18 22:34:18] 2024-05-19 05:34:06,289 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-18 22:34:18] 2024-05-19 05:34:06,320 | INFO     | [payload] validate_pre thread has finished
[2024-05-18 22:34:18] 2024-05-19 05:34:06,335 | INFO     | [payload] failed_post thread has finished
[2024-05-18 22:34:18] 2024-05-19 05:34:06,365 | INFO     | [job] control thread has finished
[2024-05-18 22:34:18] 2024-05-19 05:34:06,449 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-18 22:34:18] 2024-05-19 05:34:06,560 | INFO     | [payload] validate_post thread has finished
[2024-05-18 22:34:18] 2024-05-19 05:34:06,824 | INFO     | [data] copytool_out thread has finished
[2024-05-18 22:34:18] 2024-05-19 05:34:06,830 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-18 22:34:18] 2024-05-19 05:34:06,918 | INFO     | [data] copytool_in thread has finished
[2024-05-18 22:34:18] 2024-05-19 05:34:06,934 | INFO     | [payload] execute_payloads thread has finished
[2024-05-18 22:34:18] 2024-05-19 05:34:07,454 | INFO     | [job] queue monitor thread has finished
[2024-05-18 22:34:18] 2024-05-19 05:34:10,837 | INFO     | [data] queue_monitor thread has finished
[2024-05-18 22:34:18] 2024-05-19 05:34:12,403 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139651356780352)>', '<ExcThread(monitor, started 139651152451328)>']
[2024-05-18 22:34:18] 2024-05-19 05:34:12,857 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-18 22:34:18] 2024-05-19 05:34:12,857 | INFO     | [monitor] control thread has ended
[2024-05-18 22:34:18] 2024-05-19 05:34:17,404 | INFO     | all workflow threads have been joined
[2024-05-18 22:34:18] 2024-05-19 05:34:17,405 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-18 22:34:18] 2024-05-19 05:34:17,405 | INFO     | traces error code: 0
[2024-05-18 22:34:18] 2024-05-19 05:34:17,406 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-18 22:34:18] 2024-05-19 05:34:17,509 [wrapper] ==== pilot stdout END ====
[2024-05-18 22:34:18] 2024-05-19 05:34:17,512 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-18 22:34:18] 2024-05-19 05:34:17,515 [wrapper] pilotpid: 278067
[2024-05-18 22:34:18] 2024-05-19 05:34:17,518 [wrapper] Pilot exit status: 0
[2024-05-18 22:34:18] 2024-05-19 05:34:17,527 [wrapper] pandaids: 6208546668
[2024-05-18 22:34:18] 2024-05-19 05:34:17,593 [wrapper] cleanup: SIGTERM to supervisor_pilot 275950 278068
[2024-05-18 22:34:18] 2024-05-19 05:34:17,595 [wrapper] Test setup, not cleaning
[2024-05-18 22:34:18] 2024-05-19 05:34:17,597 [wrapper] ==== wrapper stdout END ====
[2024-05-18 22:34:18] 2024-05-19 05:34:17,600 [wrapper] ==== wrapper stderr END ====
[2024-05-18 22:34:18] 2024-05-19 05:34:17,605 [wrapper] apfmon messages muted
[2024-05-18 22:34:18]  *** Error codes and diagnostics ***
[2024-05-18 22:34:18]     "exeErrorCode": 0,
[2024-05-18 22:34:18]     "exeErrorDiag": "",
[2024-05-18 22:34:18]     "pilotErrorCode": 0,
[2024-05-18 22:34:18]     "pilotErrorDiag": "",
[2024-05-18 22:34:18]  *** Listing of results directory ***
[2024-05-18 22:34:18] total 819368
[2024-05-18 22:34:18] -rw-r--r-- 1 boinc boinc    467845 May 17 21:42 pilot3.tar.gz
[2024-05-18 22:34:18] -rw-r--r-- 1 boinc boinc      5633 May 17 22:10 queuedata.json
[2024-05-18 22:34:18] -rwx------ 1 boinc boinc     32251 May 17 22:11 runpilot2-wrapper.sh
[2024-05-18 22:34:18] -rw-r--r-- 1 boinc boinc       100 May 18 21:40 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-18 22:34:18] -rwxr-xr-x 1 boinc boinc      7986 May 18 21:40 run_atlas
[2024-05-18 22:34:18] -rw-r--r-- 1 boinc boinc       105 May 18 21:40 job.xml
[2024-05-18 22:34:18] -rw-r--r-- 1 boinc boinc      6628 May 18 21:40 init_data.xml
[2024-05-18 22:34:18] -rw-r--r-- 2 boinc boinc 603027006 May 18 21:40 EVNT.38776100._000518.pool.root.1
[2024-05-18 22:34:18] -rw-r--r-- 2 boinc boinc     17537 May 18 21:40 start_atlas.sh
[2024-05-18 22:34:18] drwxrwx--x 2 boinc boinc      4096 May 18 21:40 shared
[2024-05-18 22:34:18] -rw-r--r-- 2 boinc boinc    480005 May 18 21:40 input.tar.gz
[2024-05-18 22:34:18] -rw-r--r-- 1 boinc boinc         0 May 18 21:40 boinc_lockfile
[2024-05-18 22:34:18] -rw-r--r-- 1 boinc boinc      2644 May 18 21:40 pandaJob.out
[2024-05-18 22:34:18] -rw------- 1 boinc boinc       424 May 18 21:40 setup.sh.local
[2024-05-18 22:34:18] -rw------- 1 boinc boinc   1013987 May 18 21:40 agis_schedconf.cvmfs.json
[2024-05-18 22:34:18] -rw------- 1 boinc boinc         0 May 18 21:40 agis_ddmendpoints.agis.ALL.json
[2024-05-18 22:34:18] -rw------- 1 boinc boinc   1324701 May 18 21:40 cric_ddmendpoints.json
[2024-05-18 22:34:18] drwx------ 4 boinc boinc      4096 May 18 21:40 pilot3
[2024-05-18 22:34:18] -rw------- 1 boinc boinc 231103247 May 18 22:33 HITS.38776104._015863.pool.root.1
[2024-05-18 22:34:18] -rw-r--r-- 1 boinc boinc       530 May 18 22:33 boinc_task_state.xml
[2024-05-18 22:34:18] -rw------- 1 boinc boinc      1053 May 18 22:33 memory_monitor_summary.json
[2024-05-18 22:34:18] -rw------- 1 boinc boinc    350784 May 18 22:33 log.38776104._015863.job.log.tgz.1
[2024-05-18 22:34:18] -rw------- 1 boinc boinc        95 May 18 22:33 pilot_heartbeat.json
[2024-05-18 22:34:18] -rw------- 1 boinc boinc      7768 May 18 22:34 heartbeat.json
[2024-05-18 22:34:18] -rw-r--r-- 1 boinc boinc      8192 May 18 22:34 boinc_mmap_file
[2024-05-18 22:34:18] -rw-r--r-- 1 boinc boinc        27 May 18 22:34 wrapper_checkpoint.txt
[2024-05-18 22:34:18] -rw------- 1 boinc boinc      4333 May 18 22:34 pilotlog.txt
[2024-05-18 22:34:18] -rw------- 1 boinc boinc    333777 May 18 22:34 log.38776104._015863.job.log.1
[2024-05-18 22:34:18] -rw------- 1 boinc boinc       357 May 18 22:34 output.list
[2024-05-18 22:34:18] -rw-r--r-- 1 boinc boinc       620 May 18 22:34 runtime_log
[2024-05-18 22:34:18] -rw------- 1 boinc boinc    706560 May 18 22:34 result.tar.gz
[2024-05-18 22:34:18] -rw-r--r-- 1 boinc boinc     11286 May 18 22:34 runtime_log.err
[2024-05-18 22:34:18] -rw------- 1 boinc boinc       653 May 18 22:34 cgqMDmzWRS5nsSi4apGgGQJmABFKDmABFKDm4ySLDml6RKDmylZkrm.diag
[2024-05-18 22:34:18] -rw-r--r-- 1 boinc boinc     21716 May 18 22:34 stderr.txt
[2024-05-18 22:34:18] HITS file was successfully produced:
[2024-05-18 22:34:18] -rw------- 1 boinc boinc 231103247 May 18 22:33 shared/HITS.pool.root.1
[2024-05-18 22:34:18]  *** Contents of shared directory: ***
[2024-05-18 22:34:18] total 815776
[2024-05-18 22:34:18] -rw-r--r-- 2 boinc boinc 603027006 May 18 21:40 ATLAS.root_0
[2024-05-18 22:34:18] -rw-r--r-- 2 boinc boinc     17537 May 18 21:40 start_atlas.sh
[2024-05-18 22:34:18] -rw-r--r-- 2 boinc boinc    480005 May 18 21:40 input.tar.gz
[2024-05-18 22:34:18] -rw------- 1 boinc boinc 231103247 May 18 22:33 HITS.pool.root.1
[2024-05-18 22:34:18] -rw------- 1 boinc boinc    706560 May 18 22:34 result.tar.gz
22:34:20 (273932): run_atlas exited; CPU time 26745.764244
22:34:20 (273932): called boinc_finish(0)

</stderr_txt>
]]>

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