Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:37:31 (2896182): wrapper (7.7.26015): starting
07:37:31 (2896182): wrapper: running run_atlas (--nthreads 4)
[2024-05-20 07:37:31] Arguments: --nthreads 4
[2024-05-20 07:37:31] Threads: 4
[2024-05-20 07:37:31] Checking for CVMFS
[2024-05-20 07:37:31] No cvmfs_config command found, will try listing directly
[2024-05-20 07:37:31] CVMFS is ok
[2024-05-20 07:37:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-20 07:37:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-20 07:37:31] Further information can be found at the LHC@home message board.
[2024-05-20 07:37:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-20 07:37:31] Checking for apptainer binary...
[2024-05-20 07:37:31] which: no apptainer in ((null))
[2024-05-20 07:37:31] apptainer is not installed, using version from CVMFS
[2024-05-20 07:37:31] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-20 07:37:32] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot128/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2024-05-20 07:37:32] apptainer works
[2024-05-20 07:37:32] Set ATHENA_PROC_NUMBER=4
[2024-05-20 07:37:32] Set ATHENA_CORE_NUMBER=4
[2024-05-20 07:37:32] Starting ATLAS job with PandaID=6208528681
[2024-05-20 07:37:32] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot128/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-20 09:34:36]  *** The last 200 lines of the pilot log: ***
[2024-05-20 09:34:36] 2024-05-20 07:34:14,205 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-20 09:34:36] 2024-05-20 07:34:14,205 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-20 09:34:36] 2024-05-20 07:34:14,208 | INFO     | fitting pss+swap vs Time
[2024-05-20 09:34:36] 2024-05-20 07:34:14,208 | INFO     | model: linear, x: [1716183488.0, 1716183549.0, 1716183610.0, 1716183671.0, 1716183732.0, 1716183793.0, 1716183854.0, 1716183915.0, 1716183976.0, 1716184037.0, 1716
[2024-05-20 09:34:36] 2024-05-20 07:34:14,208 | INFO     | sum of square deviations: 471562330.0
[2024-05-20 09:34:36] 2024-05-20 07:34:14,209 | INFO     | sum of deviations: 32237697361.999973
[2024-05-20 09:34:36] 2024-05-20 07:34:14,209 | INFO     | mean x: 1716186965.0
[2024-05-20 09:34:36] 2024-05-20 07:34:14,209 | INFO     | mean y: 2221194.1739130435
[2024-05-20 09:34:36] 2024-05-20 07:34:14,209 | INFO     | -- intersect: -117322493853.10146
[2024-05-20 09:34:36] 2024-05-20 07:34:14,209 | INFO     | intersect: -117322493853.10146
[2024-05-20 09:34:36] 2024-05-20 07:34:14,209 | INFO     | chi2: 4.232207872897626
[2024-05-20 09:34:36] 2024-05-20 07:34:14,210 | INFO     | model: linear, x: [1716183488.0, 1716183549.0, 1716183610.0, 1716183671.0, 1716183732.0, 1716183793.0, 1716183854.0, 1716183915.0, 1716183976.0, 1716184037.0, 1716
[2024-05-20 09:34:36] 2024-05-20 07:34:14,210 | INFO     | sum of square deviations: 412686807.5
[2024-05-20 09:34:36] 2024-05-20 07:34:14,210 | INFO     | sum of deviations: 37765987976.99999
[2024-05-20 09:34:36] 2024-05-20 07:34:14,211 | INFO     | mean x: 1716186812.5
[2024-05-20 09:34:36] 2024-05-20 07:34:14,211 | INFO     | mean y: 2234845.1636363636
[2024-05-20 09:34:36] 2024-05-20 07:34:14,211 | INFO     | -- intersect: -157050254716.5749
[2024-05-20 09:34:36] 2024-05-20 07:34:14,211 | INFO     | intersect: -157050254716.5749
[2024-05-20 09:34:36] 2024-05-20 07:34:14,211 | INFO     | chi2: 3.419293832422195
[2024-05-20 09:34:36] 2024-05-20 07:34:14,211 | INFO     | current chi2=3.419293832422195 (change=19.207800393766124 %)
[2024-05-20 09:34:36] 2024-05-20 07:34:14,211 | INFO     | right removable region: 109
[2024-05-20 09:34:36] 2024-05-20 07:34:14,212 | INFO     | model: linear, x: [1716183793.0, 1716183854.0, 1716183915.0, 1716183976.0, 1716184037.0, 1716184098.0, 1716184159.0, 1716184220.0, 1716184281.0, 1716184342.0, 1716
[2024-05-20 09:34:36] 2024-05-20 07:34:14,212 | INFO     | sum of square deviations: 412686807.5
[2024-05-20 09:34:36] 2024-05-20 07:34:14,212 | INFO     | sum of deviations: 9153354359.500002
[2024-05-20 09:34:36] 2024-05-20 07:34:14,212 | INFO     | mean x: 1716187117.5
[2024-05-20 09:34:36] 2024-05-20 07:34:14,212 | INFO     | mean y: 2280601.590909091
[2024-05-20 09:34:36] 2024-05-20 07:34:14,213 | INFO     | -- intersect: -38062587352.023926
[2024-05-20 09:34:36] 2024-05-20 07:34:14,213 | INFO     | intersect: -38062587352.023926
[2024-05-20 09:34:36] 2024-05-20 07:34:14,213 | INFO     | chi2: 2.120014600228802
[2024-05-20 09:34:36] 2024-05-20 07:34:14,213 | INFO     | current chi2=2.120014600228802 (change=49.90759754961394 %)
[2024-05-20 09:34:36] 2024-05-20 07:34:14,213 | INFO     | model: linear, x: [1716184098.0, 1716184159.0, 1716184220.0, 1716184281.0, 1716184342.0, 1716184403.0, 1716184464.0, 1716184525.0, 1716184586.0, 1716184647.0, 1716
[2024-05-20 09:34:36] 2024-05-20 07:34:14,213 | INFO     | sum of square deviations: 358927660.0
[2024-05-20 09:34:36] 2024-05-20 07:34:14,214 | INFO     | sum of deviations: -9110240566.0
[2024-05-20 09:34:36] 2024-05-20 07:34:14,214 | INFO     | mean x: 1716187270.0
[2024-05-20 09:34:36] 2024-05-20 07:34:14,214 | INFO     | mean y: 2332502.2952380953
[2024-05-20 09:34:36] 2024-05-20 07:34:14,214 | INFO     | -- intersect: 43562304687.23856
[2024-05-20 09:34:36] 2024-05-20 07:34:14,214 | INFO     | intersect: 43562304687.23856
[2024-05-20 09:34:36] 2024-05-20 07:34:14,215 | INFO     | chi2: 0.9109855526379502
[2024-05-20 09:34:36] 2024-05-20 07:34:14,215 | INFO     | current chi2=0.9109855526379502 (change=57.02927930120706 %)
[2024-05-20 09:34:36] 2024-05-20 07:34:14,215 | INFO     | model: linear, x: [1716184403.0, 1716184464.0, 1716184525.0, 1716184586.0, 1716184647.0, 1716184708.0, 1716184769.0, 1716184830.0, 1716184891.0, 1716184952.0, 1716
[2024-05-20 09:34:36] 2024-05-20 07:34:14,215 | INFO     | sum of square deviations: 310052325.0
[2024-05-20 09:34:36] 2024-05-20 07:34:14,216 | INFO     | sum of deviations: -9749950463.5
[2024-05-20 09:34:36] 2024-05-20 07:34:14,216 | INFO     | mean x: 1716187422.5
[2024-05-20 09:34:36] 2024-05-20 07:34:14,216 | INFO     | mean y: 2334288.73
[2024-05-20 09:34:36] 2024-05-20 07:34:14,216 | INFO     | -- intersect: 53969813343.94026
[2024-05-20 09:34:36] 2024-05-20 07:34:14,216 | INFO     | intersect: 53969813343.94026
[2024-05-20 09:34:36] 2024-05-20 07:34:14,216 | INFO     | chi2: 0.8773479789156683
[2024-05-20 09:34:36] 2024-05-20 07:34:14,216 | INFO     | current chi2=0.8773479789156683 (change=3.6924376709243374 %)
[2024-05-20 09:34:36] 2024-05-20 07:34:14,216 | INFO     | left removable region: 30
[2024-05-20 09:34:36] 2024-05-20 07:34:14,217 | INFO     | model: linear, x: [1716185318.0, 1716185379.0, 1716185440.0, 1716185501.0, 1716185562.0, 1716185623.0, 1716185684.0, 1716185745.0, 1716185806.0, 1716185867.0, 1716
[2024-05-20 09:34:36] 2024-05-20 07:34:14,217 | INFO     | sum of square deviations: 152858680.0
[2024-05-20 09:34:36] 2024-05-20 07:34:14,217 | INFO     | sum of deviations: 695628140.0
[2024-05-20 09:34:36] 2024-05-20 07:34:14,217 | INFO     | mean x: 1716187697.0
[2024-05-20 09:34:36] 2024-05-20 07:34:14,217 | INFO     | mean y: 2339279.4683544305
[2024-05-20 09:34:36] 2024-05-20 07:34:14,217 | INFO     | -- intersect: -7807674882.337789
[2024-05-20 09:34:36] 2024-05-20 07:34:14,217 | INFO     | intersect: -7807674882.337789
[2024-05-20 09:34:36] 2024-05-20 07:34:14,218 | INFO     | chi2: 3.3385644316176475e-05
[2024-05-20 09:34:36] 2024-05-20 07:34:14,218 | INFO     | -- intersect: -7807674882.337789
[2024-05-20 09:34:36] 2024-05-20 07:34:14,218 | INFO     | current memory leak: 4.55 B/s (using 79 data points, chi2=0.00)
[2024-05-20 09:34:36] 2024-05-20 07:34:14,218 | INFO     | ..............................
[2024-05-20 09:34:36] 2024-05-20 07:34:14,218 | INFO     | . Timing measurements:
[2024-05-20 09:34:36] 2024-05-20 07:34:14,218 | INFO     | . get job = 0 s
[2024-05-20 09:34:36] 2024-05-20 07:34:14,219 | INFO     | . initial setup = 1 s
[2024-05-20 09:34:36] 2024-05-20 07:34:14,219 | INFO     | . payload setup = 5 s
[2024-05-20 09:34:36] 2024-05-20 07:34:14,219 | INFO     | . stage-in = 0 s
[2024-05-20 09:34:36] 2024-05-20 07:34:14,219 | INFO     | . payload execution = 6960 s
[2024-05-20 09:34:36] 2024-05-20 07:34:14,219 | INFO     | . stage-out = 0 s
[2024-05-20 09:34:36] 2024-05-20 07:34:14,219 | INFO     | . log creation = 0 s
[2024-05-20 09:34:36] 2024-05-20 07:34:14,219 | INFO     | ..............................
[2024-05-20 09:34:36] 2024-05-20 07:34:14,297 | INFO     | 
[2024-05-20 09:34:36] 2024-05-20 07:34:14,298 | INFO     | job summary report
[2024-05-20 09:34:36] 2024-05-20 07:34:14,298 | INFO     | --------------------------------------------------
[2024-05-20 09:34:36] 2024-05-20 07:34:14,298 | INFO     | PanDA job id: 6208528681
[2024-05-20 09:34:36] 2024-05-20 07:34:14,298 | INFO     | task id: 38776104
[2024-05-20 09:34:36] 2024-05-20 07:34:14,298 | INFO     | errors: (none)
[2024-05-20 09:34:36] 2024-05-20 07:34:14,298 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-20 09:34:36] 2024-05-20 07:34:14,298 | INFO     | pilot state: finished 
[2024-05-20 09:34:36] 2024-05-20 07:34:14,298 | INFO     | transexitcode: 0
[2024-05-20 09:34:36] 2024-05-20 07:34:14,298 | INFO     | exeerrorcode: 0
[2024-05-20 09:34:36] 2024-05-20 07:34:14,298 | INFO     | exeerrordiag: 
[2024-05-20 09:34:36] 2024-05-20 07:34:14,298 | INFO     | exitcode: 0
[2024-05-20 09:34:36] 2024-05-20 07:34:14,298 | INFO     | exitmsg: OK
[2024-05-20 09:34:36] 2024-05-20 07:34:14,299 | INFO     | cpuconsumptiontime: 25163 s
[2024-05-20 09:34:36] 2024-05-20 07:34:14,299 | INFO     | nevents: 400
[2024-05-20 09:34:36] 2024-05-20 07:34:14,299 | INFO     | neventsw: 0
[2024-05-20 09:34:36] 2024-05-20 07:34:14,299 | INFO     | pid: 2908703
[2024-05-20 09:34:36] 2024-05-20 07:34:14,299 | INFO     | pgrp: 2908703
[2024-05-20 09:34:36] 2024-05-20 07:34:14,299 | INFO     | corecount: 4
[2024-05-20 09:34:36] 2024-05-20 07:34:14,299 | INFO     | event service: False
[2024-05-20 09:34:36] 2024-05-20 07:34:14,299 | INFO     | sizes: {0: 2392215, 1: 2392243, 5: 2392449, 11: 2392505, 6970: 2419743, 6972: 2428911, 6977: 2429025}
[2024-05-20 09:34:36] 2024-05-20 07:34:14,299 | INFO     | --------------------------------------------------
[2024-05-20 09:34:36] 2024-05-20 07:34:14,299 | INFO     | 
[2024-05-20 09:34:36] 2024-05-20 07:34:14,299 | INFO     | executing command: ls -lF /scratch/boinc/var/slot128/slots/0
[2024-05-20 09:34:36] 2024-05-20 07:34:14,323 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-20 09:34:36] 2024-05-20 07:34:14,324 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-20 09:34:36] 2024-05-20 07:34:14,324 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-20 09:34:36] 2024-05-20 07:34:14,324 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-20 09:34:36] 2024-05-20 07:34:14,324 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-20 09:34:36] 2024-05-20 07:34:14,324 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-20 09:34:36] 2024-05-20 07:34:14,324 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-20 09:34:36] 2024-05-20 07:34:14,324 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-20 09:34:36] 2024-05-20 07:34:14,324 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-20 09:34:36] 2024-05-20 07:34:14,324 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-20 09:34:36] 2024-05-20 07:34:14,324 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-20 09:34:36] 2024-05-20 07:34:14,324 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-20 09:34:36] 2024-05-20 07:34:14,324 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-20 09:34:36] 2024-05-20 07:34:14,325 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-20 09:34:36] 2024-05-20 07:34:14,325 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-20 09:34:36] 2024-05-20 07:34:14,325 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-20 09:34:36] 2024-05-20 07:34:14,325 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-20 09:34:36] 2024-05-20 07:34:14,325 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-20 09:34:36] 2024-05-20 07:34:14,325 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-20 09:34:36] 2024-05-20 07:34:14,325 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-20 09:34:36] 2024-05-20 07:34:14,325 | INFO     | job 6208528681 has completed (purged errors)
[2024-05-20 09:34:36] 2024-05-20 07:34:14,325 | INFO     | overall cleanup function is called
[2024-05-20 09:34:36] 2024-05-20 07:34:15,332 | INFO     | --- collectZombieJob: --- 10, [2908703]
[2024-05-20 09:34:36] 2024-05-20 07:34:15,332 | INFO     | zombie collector waiting for pid 2908703
[2024-05-20 09:34:36] 2024-05-20 07:34:15,333 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-20 09:34:36] 2024-05-20 07:34:16,338 | INFO     | collected zombie processes
[2024-05-20 09:34:36] 2024-05-20 07:34:16,338 | INFO     | will now attempt to kill all subprocesses of pid=2908703
[2024-05-20 09:34:36] 2024-05-20 07:34:16,576 | INFO     | process IDs to be killed: [2908703] (in reverse order)
[2024-05-20 09:34:36] 2024-05-20 07:34:16,748 | WARNING  | found no corresponding commands to process id(s)
[2024-05-20 09:34:36] 2024-05-20 07:34:16,748 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-20 09:34:36] 2024-05-20 07:34:16,760 | INFO     | did not find any defunct processes belonging to 2908703
[2024-05-20 09:34:36] 2024-05-20 07:34:16,768 | INFO     | did not find any defunct processes belonging to 2908703
[2024-05-20 09:34:36] 2024-05-20 07:34:16,768 | INFO     | ready for new job
[2024-05-20 09:34:36] 2024-05-20 07:34:16,768 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-20 09:34:36] 2024-05-20 07:34:16,770 | INFO     | *************************************
[2024-05-20 09:34:36] 2024-05-20 07:34:16,770 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-20 09:34:36] 2024-05-20 07:34:16,770 | INFO     | *************************************
[2024-05-20 09:34:36] 2024-05-20 07:34:16,770 | INFO     | 
[2024-05-20 09:34:36] 2024-05-20 07:34:16,774 | INFO     | architecture information:
[2024-05-20 09:34:36] 2024-05-20 07:34:16,774 | INFO     | executing command: cat /etc/os-release
[2024-05-20 09:34:36] 2024-05-20 07:34:16,790 | INFO     | cat /etc/os-release:
[2024-05-20 09:34:36] NAME="CentOS Linux"
[2024-05-20 09:34:36] VERSION="7 (Core)"
[2024-05-20 09:34:36] ID="centos"
[2024-05-20 09:34:36] ID_LIKE="rhel fedora"
[2024-05-20 09:34:36] VERSION_ID="7"
[2024-05-20 09:34:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-20 09:34:36] ANSI_COLOR="0;31"
[2024-05-20 09:34:36] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-20 09:34:36] HOME_URL="https://www.centos.org/"
[2024-05-20 09:34:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-20 09:34:36] 
[2024-05-20 09:34:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-20 09:34:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-20 09:34:36] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-20 09:34:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-20 09:34:36] 
[2024-05-20 09:34:36] 2024-05-20 07:34:16,790 | INFO     | *************************************
[2024-05-20 09:34:36] 2024-05-20 07:34:17,293 | INFO     | executing command: df -mP /scratch/boinc/var/slot128/slots/0
[2024-05-20 09:34:36] 2024-05-20 07:34:17,312 | INFO     | sufficient remaining disk space (3027329089536 B)
[2024-05-20 09:34:36] 2024-05-20 07:34:17,312 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-20 09:34:36] 2024-05-20 07:34:17,312 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-20 09:34:36] 2024-05-20 07:34:17,313 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-20 09:34:36] 2024-05-20 07:34:17,313 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-20 09:34:36] 2024-05-20 07:34:17,313 | INFO     | aborting loop
[2024-05-20 09:34:36] 2024-05-20 07:34:17,398 | INFO     | all data control threads have been joined
[2024-05-20 09:34:36] 2024-05-20 07:34:17,589 | INFO     | all payload control threads have been joined
[2024-05-20 09:34:36] 2024-05-20 07:34:17,924 | INFO     | found 0 job(s) in 20 queues
[2024-05-20 09:34:36] 2024-05-20 07:34:17,924 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-20 09:34:36] 2024-05-20 07:34:17,924 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-20 09:34:36] 2024-05-20 07:34:18,274 | INFO     | all job control threads have been joined
[2024-05-20 09:34:36] 2024-05-20 07:34:18,318 | INFO     | [job] retrieve thread has finished
[2024-05-20 09:34:36] 2024-05-20 07:34:18,318 | INFO     | [job] job monitor thread has finished
[2024-05-20 09:34:36] 2024-05-20 07:34:18,404 | INFO     | [data] control thread has finished
[2024-05-20 09:34:36] 2024-05-20 07:34:18,594 | INFO     | [payload] control thread has finished
[2024-05-20 09:34:36] 2024-05-20 07:34:18,784 | INFO     | [payload] execute_payloads thread has finished
[2024-05-20 09:34:36] 2024-05-20 07:34:19,149 | INFO     | [payload] failed_post thread has finished
[2024-05-20 09:34:36] 2024-05-20 07:34:19,280 | INFO     | [job] control thread has finished
[2024-05-20 09:34:36] 2024-05-20 07:34:19,304 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-20 09:34:36] 2024-05-20 07:34:19,316 | INFO     | [data] copytool_out thread has finished
[2024-05-20 09:34:36] 2024-05-20 07:34:19,563 | INFO     | [job] validate thread has finished
[2024-05-20 09:34:36] 2024-05-20 07:34:19,695 | INFO     | [job] create_data_payload thread has finished
[2024-05-20 09:34:36] 2024-05-20 07:34:19,713 | INFO     | [data] copytool_in thread has finished
[2024-05-20 09:34:36] 2024-05-20 07:34:19,728 | INFO     | [payload] validate_pre thread has finished
[2024-05-20 09:34:36] 2024-05-20 07:34:19,767 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-20 09:34:36] 2024-05-20 07:34:19,772 | INFO     | [payload] validate_post thread has finished
[2024-05-20 09:34:36] 2024-05-20 07:34:20,309 | INFO     | [job] queue monitor thread has finished
[2024-05-20 09:34:36] 2024-05-20 07:34:23,773 | INFO     | [data] queue_monitor thread has finished
[2024-05-20 09:34:36] 2024-05-20 07:34:28,202 | INFO     | job.realtimelogging is not enabled
[2024-05-20 09:34:36] 2024-05-20 07:34:29,207 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-20 09:34:36] 2024-05-20 07:34:30,346 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47666260440128)>', '<ExcThread(monitor, started 47666501281536)>']
[2024-05-20 09:34:36] 2024-05-20 07:34:30,989 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-20 09:34:36] 2024-05-20 07:34:30,990 | INFO     | [monitor] control thread has ended
[2024-05-20 09:34:36] 2024-05-20 07:34:35,371 | INFO     | all workflow threads have been joined
[2024-05-20 09:34:36] 2024-05-20 07:34:35,371 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-20 09:34:36] 2024-05-20 07:34:35,372 | INFO     | traces error code: 0
[2024-05-20 09:34:36] 2024-05-20 07:34:35,372 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-20 09:34:36] 2024-05-20 07:34:35,455 [wrapper] ==== pilot stdout END ====
[2024-05-20 09:34:36] 2024-05-20 07:34:35,458 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-20 09:34:36] 2024-05-20 07:34:35,460 [wrapper] pilotpid: 2900808
[2024-05-20 09:34:36] 2024-05-20 07:34:35,462 [wrapper] Pilot exit status: 0
[2024-05-20 09:34:36] 2024-05-20 07:34:35,469 [wrapper] pandaids: 6208528681
[2024-05-20 09:34:36] 2024-05-20 07:34:35,597 [wrapper] cleanup: SIGTERM to supervisor_pilot 3694514 2900809
[2024-05-20 09:34:36] 2024-05-20 07:34:35,599 [wrapper] Test setup, not cleaning
[2024-05-20 09:34:36] 2024-05-20 07:34:35,601 [wrapper] ==== wrapper stdout END ====
[2024-05-20 09:34:36] 2024-05-20 07:34:35,603 [wrapper] ==== wrapper stderr END ====
[2024-05-20 09:34:36] 2024-05-20 07:34:35,606 [wrapper] apfmon messages muted
[2024-05-20 09:34:36]  *** Error codes and diagnostics ***
[2024-05-20 09:34:36]     "exeErrorCode": 0,
[2024-05-20 09:34:36]     "exeErrorDiag": "",
[2024-05-20 09:34:36]     "pilotErrorCode": 0,
[2024-05-20 09:34:36]     "pilotErrorDiag": "",
[2024-05-20 09:34:36]  *** Listing of results directory ***
[2024-05-20 09:34:36] total 818052
[2024-05-20 09:34:36] -rw-r--r-- 1 boinc boinc    467845 May 18 06:02 pilot3.tar.gz
[2024-05-20 09:34:36] -rw-r--r-- 1 boinc boinc      5633 May 18 06:10 queuedata.json
[2024-05-20 09:34:36] -rwx------ 1 boinc boinc     32251 May 18 06:10 runpilot2-wrapper.sh
[2024-05-20 09:34:36] -rw-r--r-- 1 boinc boinc       100 May 20 07:37 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-20 09:34:36] -rwxr-xr-x 1 boinc boinc      7986 May 20 07:37 run_atlas
[2024-05-20 09:34:36] -rw-r--r-- 1 boinc boinc       105 May 20 07:37 job.xml
[2024-05-20 09:34:36] -rw-r--r-- 2 boinc boinc 600594183 May 20 07:37 EVNT.38776100._000306.pool.root.1
[2024-05-20 09:34:36] -rw-r--r-- 2 boinc boinc     17537 May 20 07:37 start_atlas.sh
[2024-05-20 09:34:36] drwxrwx--x 2 boinc boinc      4096 May 20 07:37 shared
[2024-05-20 09:34:36] -rw-r--r-- 2 boinc boinc    480012 May 20 07:37 input.tar.gz
[2024-05-20 09:34:36] -rw-r--r-- 1 boinc boinc      6646 May 20 07:37 init_data.xml
[2024-05-20 09:34:36] -rw-r--r-- 1 boinc boinc         0 May 20 07:37 boinc_lockfile
[2024-05-20 09:34:36] -rw-r--r-- 1 boinc boinc      2642 May 20 07:37 pandaJob.out
[2024-05-20 09:34:36] -rw------- 1 boinc boinc       424 May 20 07:37 setup.sh.local
[2024-05-20 09:34:36] -rw------- 1 boinc boinc   1013883 May 20 07:37 agis_schedconf.cvmfs.json
[2024-05-20 09:34:36] -rw------- 1 boinc boinc         0 May 20 07:37 agis_ddmendpoints.agis.ALL.json
[2024-05-20 09:34:36] -rw------- 1 boinc boinc   1324701 May 20 07:37 cric_ddmendpoints.json
[2024-05-20 09:34:36] drwx------ 4 boinc boinc      4096 May 20 07:37 pilot3
[2024-05-20 09:34:36] -rw------- 1 boinc boinc 231627944 May 20 09:33 HITS.38776104._015545.pool.root.1
[2024-05-20 09:34:36] -rw-r--r-- 1 boinc boinc       530 May 20 09:33 boinc_task_state.xml
[2024-05-20 09:34:36] -rw------- 1 boinc boinc        95 May 20 09:33 pilot_heartbeat.json
[2024-05-20 09:34:36] -rw------- 1 boinc boinc      1040 May 20 09:34 memory_monitor_summary.json
[2024-05-20 09:34:36] -rw------- 1 boinc boinc    258710 May 20 09:34 log.38776104._015545.job.log.tgz.1
[2024-05-20 09:34:36] -rw------- 1 boinc boinc      7721 May 20 09:34 heartbeat.json
[2024-05-20 09:34:36] -rw-r--r-- 1 boinc boinc        27 May 20 09:34 wrapper_checkpoint.txt
[2024-05-20 09:34:36] -rw-r--r-- 1 boinc boinc      8192 May 20 09:34 boinc_mmap_file
[2024-05-20 09:34:36] -rw------- 1 boinc boinc      4295 May 20 09:34 pilotlog.txt
[2024-05-20 09:34:36] -rw------- 1 boinc boinc    709236 May 20 09:34 log.38776104._015545.job.log.1
[2024-05-20 09:34:36] -rw------- 1 boinc boinc       357 May 20 09:34 output.list
[2024-05-20 09:34:36] -rw-r--r-- 1 boinc boinc       620 May 20 09:34 runtime_log
[2024-05-20 09:34:36] -rw------- 1 boinc boinc    983040 May 20 09:34 result.tar.gz
[2024-05-20 09:34:36] -rw-r--r-- 1 boinc boinc     11428 May 20 09:34 runtime_log.err
[2024-05-20 09:34:36] -rw------- 1 boinc boinc       656 May 20 09:34 GfrNDmUaQS5n9Rq4apoT9bVoABFKDmABFKDmlqFKDmHiLKDmz19vQm.diag
[2024-05-20 09:34:36] -rw-r--r-- 1 boinc boinc     21258 May 20 09:34 stderr.txt
[2024-05-20 09:34:36] HITS file was successfully produced:
[2024-05-20 09:34:36] -rw------- 1 boinc boinc 231627944 May 20 09:33 shared/HITS.pool.root.1
[2024-05-20 09:34:36]  *** Contents of shared directory: ***
[2024-05-20 09:34:36] total 814180
[2024-05-20 09:34:36] -rw-r--r-- 2 boinc boinc 600594183 May 20 07:37 ATLAS.root_0
[2024-05-20 09:34:36] -rw-r--r-- 2 boinc boinc     17537 May 20 07:37 start_atlas.sh
[2024-05-20 09:34:36] -rw-r--r-- 2 boinc boinc    480012 May 20 07:37 input.tar.gz
[2024-05-20 09:34:36] -rw------- 1 boinc boinc 231627944 May 20 09:33 HITS.pool.root.1
[2024-05-20 09:34:36] -rw------- 1 boinc boinc    983040 May 20 09:34 result.tar.gz
09:34:37 (2896182): run_atlas exited; CPU time 25010.635062
09:34:37 (2896182): called boinc_finish(0)

</stderr_txt>
]]>

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