Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
2024-05-18 09:16:21 (11164): vboxwrapper version 26207
2024-05-18 09:16:21 (11164): BOINC client version: 7.20.2
2024-05-18 09:16:22 (11164): Detected: VirtualBox VboxManage Interface (Version: 7.0.12)
2024-05-18 09:16:22 (11164): Successfully copied 'init_data.xml' to the shared directory.
2024-05-18 09:16:22 (11164): Create VM. (boinc_5f4bf87c33f6f3ec, slot#1)
2024-05-18 09:16:23 (11164): Setting Memory Size for VM. (4096MB)
2024-05-18 09:16:23 (11164): Setting CPU Count for VM. (5)
2024-05-18 09:16:24 (11164): Setting Chipset Options for VM.
2024-05-18 09:16:24 (11164): Setting Graphics Controller Options for VM.
2024-05-18 09:16:24 (11164): Setting Boot Options for VM.
2024-05-18 09:16:25 (11164): Setting Network Configuration for NAT.
2024-05-18 09:16:25 (11164): Enabling VM Network Access.
2024-05-18 09:16:25 (11164): Disabling USB Support for VM.
2024-05-18 09:16:26 (11164): Disabling COM Port Support for VM.
2024-05-18 09:16:26 (11164): Disabling LPT Port Support for VM.
2024-05-18 09:16:26 (11164): Disabling Audio Support for VM.
2024-05-18 09:16:26 (11164): Disabling Clipboard Support for VM.
2024-05-18 09:16:27 (11164): Disabling Drag and Drop Support for VM.
2024-05-18 09:16:27 (11164): Adding storage controller(s) to VM.
2024-05-18 09:16:27 (11164): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-05-18 09:16:29 (11164): Adding VirtualBox Guest Additions to VM.
2024-05-18 09:16:30 (11164): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-05-18 09:16:30 (11164): forwarding host port 59856 to guest port 80
2024-05-18 09:16:30 (11164): Enabling remote desktop for VM.
2024-05-18 09:16:31 (11164): Enabling shared directory for VM.
2024-05-18 09:16:32 (11164): Starting VM using VBoxManage interface. (boinc_5f4bf87c33f6f3ec, slot#1)
2024-05-18 09:16:38 (11164): Successfully started VM. (PID = '8344')
2024-05-18 09:16:38 (11164): Reporting VM Process ID to BOINC.
2024-05-18 09:16:38 (11164): Guest Log: BIOS: VirtualBox 7.0.12
2024-05-18 09:16:38 (11164): Guest Log: CPUID EDX: 0x178bfbff
2024-05-18 09:16:38 (11164): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-05-18 09:16:38 (11164): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-05-18 09:16:38 (11164): VM state change detected. (old = 'poweredoff', new = 'running')
2024-05-18 09:16:38 (11164): Detected: Web Application Enabled (http://localhost:59856)
2024-05-18 09:16:38 (11164): Detected: Remote Desktop Enabled (localhost:59857)
2024-05-18 09:16:38 (11164): Preference change detected
2024-05-18 09:16:38 (11164): Setting CPU throttle for VM. (100%)
2024-05-18 09:16:38 (11164): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2024-05-18 09:16:40 (11164): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-05-18 09:16:40 (11164): Guest Log: BIOS: Booting from Hard Disk...
2024-05-18 09:16:43 (11164): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-05-18 09:16:43 (11164): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-05-18 09:16:43 (11164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-05-18 09:16:43 (11164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-05-18 09:16:43 (11164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-05-18 09:16:43 (11164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-05-18 09:16:43 (11164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-05-18 09:16:43 (11164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-05-18 09:16:43 (11164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-05-18 09:16:43 (11164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-05-18 09:16:43 (11164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-05-18 09:16:43 (11164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-05-18 09:16:43 (11164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-05-18 09:16:43 (11164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-05-18 09:16:43 (11164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-05-18 09:16:43 (11164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-05-18 09:16:43 (11164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-05-18 09:16:43 (11164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-05-18 09:16:43 (11164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-05-18 09:16:43 (11164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-05-18 09:16:43 (11164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-05-18 09:16:43 (11164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-05-18 09:16:43 (11164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-05-18 09:16:43 (11164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-05-18 09:16:43 (11164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-05-18 09:16:43 (11164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-05-18 09:16:43 (11164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-05-18 09:16:43 (11164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-05-18 09:16:43 (11164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-05-18 09:16:43 (11164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-05-18 09:16:43 (11164): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-05-18 09:16:43 (11164): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-05-18 09:16:49 (11164): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-05-18 09:16:49 (11164): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-05-18 09:17:02 (11164): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-05-18 09:17:02 (11164): Guest Log: 00:00:00.000080 main     Log opened 2024-05-18T07:17:00.930774000Z
2024-05-18 09:17:02 (11164): Guest Log: 00:00:00.000148 main     OS Product: Linux
2024-05-18 09:17:02 (11164): Guest Log: 00:00:00.000177 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-05-18 09:17:02 (11164): Guest Log: 00:00:00.000204 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-05-18 09:17:02 (11164): Guest Log: 00:00:00.000223 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-05-18 09:17:02 (11164): Guest Log: 00:00:00.000224 main     Process ID: 1302
2024-05-18 09:17:02 (11164): Guest Log: 00:00:00.000225 main     Package type: LINUX_64BITS_GENERIC
2024-05-18 09:17:02 (11164): Guest Log: 00:00:00.000833 main     5.2.32 r132073 started. Verbose level = 0
2024-05-18 09:17:02 (11164): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-05-18 09:17:02 (11164): Guest Log: [INFO] Mounting shared directory
2024-05-18 09:17:02 (11164): Guest Log: [INFO] Checking for init_data.xml
2024-05-18 09:17:05 (11164): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-05-18 09:17:05 (11164): Guest Log: [INFO] Detected branch: prod
2024-05-18 09:17:05 (11164): Guest Log: This is the prod version of the ATLAS job wrapper
2024-05-18 09:17:05 (11164): Guest Log: Copying input files
2024-05-18 09:17:10 (11164): Guest Log: Copied input files into RunAtlas.
2024-05-18 09:17:10 (11164): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-05-18 09:17:10 (11164): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-05-18 09:17:10 (11164): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-05-18 09:17:10 (11164): Guest Log: Further information can be found at the LHC@home message board.
2024-05-18 09:17:21 (11164): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-05-18 09:17:21 (11164): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-05-18 09:17:21 (11164): Guest Log: 2.6.3.0 1595 0 30156 132870 4 1 3116989 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-05-18 09:17:24 (11164): Guest Log: copied the webapp to /var/www
2024-05-18 09:17:24 (11164): Guest Log: ATHENA_PROC_NUMBER=5
2024-05-18 09:17:24 (11164): Guest Log: ATHENA_CORE_NUMBER=5
2024-05-18 09:17:24 (11164): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-05-18 09:17:24 (11164): Guest Log:  *** Starting ATLAS job. (PandaID=6208492971 taskID=38776125) ***
2024-05-18 10:02:00 (11164): Preference change detected
2024-05-18 10:02:00 (11164): Setting CPU throttle for VM. (100%)
2024-05-18 10:02:01 (11164): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2024-05-18 10:36:40 (11164): Preference change detected
2024-05-18 10:36:40 (11164): Setting CPU throttle for VM. (100%)
2024-05-18 10:36:40 (11164): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2024-05-18 10:36:59 (11164): Preference change detected
2024-05-18 10:36:59 (11164): Setting CPU throttle for VM. (100%)
2024-05-18 10:36:59 (11164): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2024-05-18 10:49:33 (11164): Preference change detected
2024-05-18 10:49:33 (11164): Setting CPU throttle for VM. (100%)
2024-05-18 10:49:34 (11164): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2024-05-18 10:50:26 (11164): Preference change detected
2024-05-18 10:50:26 (11164): Setting CPU throttle for VM. (100%)
2024-05-18 10:50:27 (11164): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2024-05-18 10:56:59 (11164): Status Report: Elapsed Time: '6000.000000'
2024-05-18 10:56:59 (11164): Status Report: CPU Time: '25833.250000'
2024-05-18 11:18:33 (11164): Preference change detected
2024-05-18 11:18:33 (11164): Setting CPU throttle for VM. (100%)
2024-05-18 11:18:33 (11164): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2024-05-18 11:28:23 (11164): Guest Log:  *** Job finished ***
2024-05-18 11:28:23 (11164): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-05-18 11:28:23 (11164): Guest Log: 2024-05-18 09:28:11,939 | INFO     | [data] copytool_out thread has finished
2024-05-18 11:28:23 (11164): Guest Log: 2024-05-18 09:28:12,808 | INFO     | [job] queue monitor thread has finished
2024-05-18 11:28:23 (11164): Guest Log: 2024-05-18 09:28:14,503 | INFO     | [data] queue_monitor thread has finished
2024-05-18 11:28:23 (11164): Guest Log: 2024-05-18 09:28:14,869 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140180530816832)>', '<ExcThread(monitor, started 140179671082752)>']
2024-05-18 11:28:23 (11164): Guest Log: 2024-05-18 09:28:14,991 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-05-18 11:28:23 (11164): Guest Log: 2024-05-18 09:28:14,991 | INFO     | [monitor] control thread has ended
2024-05-18 11:28:23 (11164): Guest Log: 2024-05-18 09:28:19,875 | INFO     | all workflow threads have been joined
2024-05-18 11:28:23 (11164): Guest Log: 2024-05-18 09:28:19,875 | INFO     | end of generic workflow (traces error code: 0)
2024-05-18 11:28:23 (11164): Guest Log: 2024-05-18 09:28:19,875 | INFO     | traces error code: 0
2024-05-18 11:28:23 (11164): Guest Log: 2024-05-18 09:28:19,875 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-05-18 11:28:23 (11164): Guest Log: 2024-05-18 09:28:19,955 [wrapper] ==== pilot stdout END ====
2024-05-18 11:28:23 (11164): Guest Log: 2024-05-18 09:28:19,959 [wrapper] ==== wrapper stdout RESUME ====
2024-05-18 11:28:23 (11164): Guest Log: 2024-05-18 09:28:19,962 [wrapper] pilotpid: 6467
2024-05-18 11:28:23 (11164): Guest Log: 2024-05-18 09:28:19,965 [wrapper] Pilot exit status: 0
2024-05-18 11:28:23 (11164): Guest Log: 2024-05-18 09:28:20,035 [wrapper] pandaids: 6208492971
2024-05-18 11:28:23 (11164): Guest Log: 2024-05-18 09:28:20,056 [wrapper] cleanup: SIGTERM to supervisor_pilot 28891 6468
2024-05-18 11:28:23 (11164): Guest Log: 2024-05-18 09:28:20,060 [wrapper] Test setup, not cleaning
2024-05-18 11:28:23 (11164): Guest Log: 2024-05-18 09:28:20,064 [wrapper] ==== wrapper stdout END ====
2024-05-18 11:28:23 (11164): Guest Log: 2024-05-18 09:28:20,067 [wrapper] ==== wrapper stderr END ====
2024-05-18 11:28:23 (11164): Guest Log: 2024-05-18 09:28:20,074 [wrapper] apfmon messages muted
2024-05-18 11:28:23 (11164): Guest Log:  *** Error codes and diagnostics ***
2024-05-18 11:28:23 (11164): Guest Log:     "exeErrorCode": 0,
2024-05-18 11:28:23 (11164): Guest Log:     "exeErrorDiag": "",
2024-05-18 11:28:23 (11164): Guest Log:     "pilotErrorCode": 0,
2024-05-18 11:28:23 (11164): Guest Log:     "pilotErrorDiag": "",
2024-05-18 11:28:23 (11164): Guest Log:  *** Listing of results directory ***
2024-05-18 11:28:23 (11164): Guest Log: total 249156
2024-05-18 11:28:23 (11164): Guest Log: -rw-r--r--. 1 atlas atlas    467845 May 18 03:00 pilot3.tar.gz
2024-05-18 11:28:23 (11164): Guest Log: -rw-r--r--. 1 atlas atlas      5633 May 18 03:16 queuedata.json
2024-05-18 11:28:23 (11164): Guest Log: -rwx------. 1 atlas atlas     32251 May 18 03:16 runpilot2-wrapper.sh
2024-05-18 11:28:23 (11164): Guest Log: -rwxr-xr-x. 1 atlas atlas      8961 May 18 07:17 init_data.xml
2024-05-18 11:28:23 (11164): Guest Log: -rwxr-xr-x. 1 atlas atlas    480007 May 18 07:17 input.tar.gz
2024-05-18 11:28:23 (11164): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 May 18 07:17 start_atlas.sh
2024-05-18 11:28:23 (11164): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 18 07:17 EVNT.38776119._000452.pool.root.1 -> /data/./ATLAS.root_0
2024-05-18 11:28:23 (11164): Guest Log: -rw-r--r--. 1 atlas atlas      2635 May 18 07:17 pandaJob.out
2024-05-18 11:28:23 (11164): Guest Log: -rw-------. 1 atlas atlas       424 May 18 07:17 setup.sh.local
2024-05-18 11:28:23 (11164): Guest Log: -rw-------. 1 atlas atlas   1019065 May 18 07:17 agis_schedconf.cvmfs.json
2024-05-18 11:28:23 (11164): Guest Log: -rw-------. 1 atlas atlas         0 May 18 07:17 agis_ddmendpoints.agis.ALL.json
2024-05-18 11:28:23 (11164): Guest Log: -rw-------. 1 atlas atlas   1324701 May 18 07:17 cric_ddmendpoints.json
2024-05-18 11:28:23 (11164): Guest Log: drwx------. 4 atlas atlas      4096 May 18 07:17 pilot3
2024-05-18 11:28:23 (11164): Guest Log: -rw-------. 1 atlas atlas        95 May 18 09:27 pilot_heartbeat.json
2024-05-18 11:28:23 (11164): Guest Log: -rw-------. 1 atlas atlas 249887677 May 18 09:27 HITS.38776125._015788.pool.root.1
2024-05-18 11:28:23 (11164): Guest Log: -rw-------. 1 atlas atlas      1032 May 18 09:27 memory_monitor_summary.json
2024-05-18 11:28:23 (11164): Guest Log: -rw-------. 1 atlas atlas    267932 May 18 09:27 log.38776125._015788.job.log.tgz.1
2024-05-18 11:28:23 (11164): Guest Log: -rw-------. 1 atlas atlas      7741 May 18 09:28 heartbeat.json
2024-05-18 11:28:23 (11164): Guest Log: -rw-------. 1 atlas atlas      4271 May 18 09:28 pilotlog.txt
2024-05-18 11:28:23 (11164): Guest Log: -rw-------. 1 atlas atlas    624083 May 18 09:28 log.38776125._015788.job.log.1
2024-05-18 11:28:23 (11164): Guest Log: -rw-------. 1 atlas atlas       357 May 18 09:28 output.list
2024-05-18 11:28:23 (11164): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 18 09:28 runtime_log
2024-05-18 11:28:23 (11164): Guest Log: -rw-------. 1 atlas atlas    911360 May 18 09:28 result.tar.gz
2024-05-18 11:28:23 (11164): Guest Log: -rw-r--r--. 1 atlas atlas     10945 May 18 09:28 runtime_log.err
2024-05-18 11:28:23 (11164): Guest Log: -rw-------. 1 atlas atlas       649 May 18 09:28 IeWLDm1jPS5nsSi4apGgGQJmABFKDmABFKDm4ySLDmeyRKDmI383Vo.diag
2024-05-18 11:28:23 (11164): Guest Log: Looking for outputfile HITS.38776125._015788.pool.root.1
2024-05-18 11:28:23 (11164): Guest Log: HITS file was successfully produced
2024-05-18 11:28:23 (11164): Guest Log: -rw-------. 1 atlas atlas 249887677 May 18 09:27 /home/atlas/RunAtlas/HITS.38776125._015788.pool.root.1
2024-05-18 11:28:24 (11164): Guest Log: Successfully finished the ATLAS job!
2024-05-18 11:28:24 (11164): Guest Log: Copying the results back to the shared directory!
2024-05-18 11:28:24 (11164): Guest Log:  *** Contents of shared directory: ***
2024-05-18 11:28:24 (11164): Guest Log: total 833496
2024-05-18 11:28:24 (11164): Guest Log: -rwxrwxrwx. 1 root root 602181089 May 18 07:16 ATLAS.root_0
2024-05-18 11:28:24 (11164): Guest Log: -rwxrwxrwx. 1 root root 249887677 May 18 09:28 HITS.pool.root.1
2024-05-18 11:28:24 (11164): Guest Log: -rwxrwxrwx. 1 root root      8961 May 18 07:16 init_data.xml
2024-05-18 11:28:24 (11164): Guest Log: -rwxrwxrwx. 1 root root    480007 May 18 07:14 input.tar.gz
2024-05-18 11:28:24 (11164): Guest Log: -rwxrwxrwx. 1 root root    911360 May 18 09:28 result.tar.gz
2024-05-18 11:28:24 (11164): Guest Log: -rwxrwxrwx. 1 root root     17537 May 18 07:14 start_atlas.sh
2024-05-18 11:28:24 (11164): Guest Log:  *** Success! Shutting down the machine. ***
2024-05-18 11:28:24 (11164): VM Completion File Detected.
2024-05-18 11:28:24 (11164): Powering off VM.
2024-05-18 11:28:25 (11164): Successfully stopped VM.
2024-05-18 11:28:25 (11164): Deregistering VM. (boinc_5f4bf87c33f6f3ec, slot#1)
2024-05-18 11:28:25 (11164): Removing network bandwidth throttle group from VM.
2024-05-18 11:28:25 (11164): Removing VM from VirtualBox.
2024-05-18 11:28:30 (11164): called boinc_finish(0)

</stderr_txt>
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