Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:40:58 (1194484): wrapper (7.7.26015): starting
02:40:58 (1194484): wrapper: running run_atlas (--nthreads 12)
[2024-05-19 02:40:58] Arguments: --nthreads 12
[2024-05-19 02:40:58] Threads: 12
[2024-05-19 02:40:58] Checking for CVMFS
[2024-05-19 02:40:58] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-19 02:40:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-19 02:40:58] Running cvmfs_config stat atlas.cern.ch
[2024-05-19 02:40:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-19 02:40:58] 2.11.2.0 114863 4102 86868 132904 1 55 3491524 4096001 0 65024 1 3930390 99.874 911051 1290 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch DIRECT 1
[2024-05-19 02:40:58] CVMFS is ok
[2024-05-19 02:40:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-19 02:40:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-19 02:40:58] Small home clusters do not require a local http proxy but it is suggested if
[2024-05-19 02:40:58] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2024-05-19 02:40:58] Further information can be found at the LHC@home message board.
[2024-05-19 02:40:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-19 02:40:58] Checking for apptainer binary...
[2024-05-19 02:40:58] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-19 02:40:58] Running /usr/bin/apptainer --version
[2024-05-19 02:40:58] /usr/bin/apptainer: symbol lookup error: /usr/bin/apptainer: undefined symbol: seccomp_notify_respond
[2024-05-19 02:40:58] apptainer seems to be installed but not working
[2024-05-19 02:40:58] Will use version from CVMFS
[2024-05-19 02:40:58] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-19 02:40:59] sarnet8.local
[2024-05-19 02:40:59] apptainer works
[2024-05-19 02:40:59] Set ATHENA_PROC_NUMBER=12
[2024-05-19 02:40:59] Set ATHENA_CORE_NUMBER=12
[2024-05-19 02:40:59] Starting ATLAS job with PandaID=6208472739
[2024-05-19 02:40:59] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-19 03:39:42]  *** The last 200 lines of the pilot log: ***
[2024-05-19 03:39:42]  guid=058ff494-1a4e-49ee-95cd-150ec38908fd
[2024-05-19 03:39:42]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-19 03:39:42]  is_tar=False
[2024-05-19 03:39:42]  lfn=log.38776104._015082.job.log.tgz.1
[2024-05-19 03:39:42]  mtime=0
[2024-05-19 03:39:42]  protocol_id=None
[2024-05-19 03:39:42]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-19 03:39:42]  replicas=None
[2024-05-19 03:39:42]  scope=mc23_13p6TeV
[2024-05-19 03:39:42]  status=None
[2024-05-19 03:39:42]  status_code=0
[2024-05-19 03:39:42]  storage_token=
[2024-05-19 03:39:42]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6208472739/log.38776104._015082.job.log.tgz.1
[2024-05-19 03:39:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d7/23/log.38776104._015082.job.log.tgz.1
[2024-05-19 03:39:42]  workdir=None
[2024-05-19 03:39:42] ]
[2024-05-19 03:39:42] 2024-05-19 07:39:12,285 | INFO     | transferring file log.38776104._015082.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6208472739/log.38776104._015082.job.log.tgz.1 to /var/lib/boinc/slots/
[2024-05-19 03:39:42] 2024-05-19 07:39:12,285 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6208472739/log.38776104._015082.job.log.tgz.1 /var/lib/boinc/slots/0/log.38776104._015082.job
[2024-05-19 03:39:42] 2024-05-19 07:39:12,303 | INFO     | adding to output.list: log.38776104._015082.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d7/23/log.38776104._015082.job.log.tg
[2024-05-19 03:39:42] 2024-05-19 07:39:12,304 | INFO     | summary of transferred files:
[2024-05-19 03:39:42] 2024-05-19 07:39:12,304 | INFO     |  -- lfn=log.38776104._015082.job.log.tgz.1, status_code=0, status=transferred
[2024-05-19 03:39:42] 2024-05-19 07:39:12,304 | INFO     | stage-out finished correctly
[2024-05-19 03:39:42] 2024-05-19 07:39:14,609 | INFO     | monitor loop #261: job 0:6208472739 is in state 'finished'
[2024-05-19 03:39:42] 2024-05-19 07:39:14,609 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-19 03:39:42] 2024-05-19 07:39:14,640 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-19 03:39:42] 2024-05-19 07:39:14,690 | INFO     | job 6208472739 has state=finished
[2024-05-19 03:39:42] 2024-05-19 07:39:14,690 | INFO     | preparing for final server update for job 6208472739 in state='finished'
[2024-05-19 03:39:42] 2024-05-19 07:39:14,691 | INFO     | this job has now completed (state=finished)
[2024-05-19 03:39:42] 2024-05-19 07:39:14,691 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-19 03:39:42] 2024-05-19 07:39:14,691 | INFO     | job 6208472739 has finished - writing final server update
[2024-05-19 03:39:42] 2024-05-19 07:39:14,691 | INFO     | total number of processed events: 400 (read)
[2024-05-19 03:39:42] 2024-05-19 07:39:14,693 | INFO     | executing command: lscpu
[2024-05-19 03:39:42] 2024-05-19 07:39:14,717 | INFO     | found 12 cores (6 cores per socket, 2 sockets)
[2024-05-19 03:39:42] 2024-05-19 07:39:14,718 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-19 03:39:42] 2024-05-19 07:39:14,754 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-19 03:39:42] 2024-05-19 07:39:17,112 | INFO     | monitor loop #262: job 0:6208472739 is in state 'finished'
[2024-05-19 03:39:42] 2024-05-19 07:39:17,112 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-19 03:39:42] 2024-05-19 07:39:19,615 | INFO     | monitor loop #263: job 0:6208472739 is in state 'finished'
[2024-05-19 03:39:42] 2024-05-19 07:39:19,615 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-19 03:39:42] 2024-05-19 07:39:19,897 | INFO     | CPU arch script returned: x86-64-v3
[2024-05-19 03:39:42] 2024-05-19 07:39:19,897 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6208472739/memory_monitor_summary.json (trf name=prmon)
[2024-05-19 03:39:42] 2024-05-19 07:39:19,898 | INFO     | extracted standard info from prmon json
[2024-05-19 03:39:42] 2024-05-19 07:39:19,898 | INFO     | extracted standard memory fields from prmon json
[2024-05-19 03:39:42] 2024-05-19 07:39:19,898 | WARNING  | GPU info not found in prmon json
[2024-05-19 03:39:42] 2024-05-19 07:39:19,898 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-19 03:39:42] 2024-05-19 07:39:19,898 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-19 03:39:42] 2024-05-19 07:39:19,899 | INFO     | fitting pss+swap vs Time
[2024-05-19 03:39:42] 2024-05-19 07:39:19,899 | INFO     | model: linear, x: [1716101191.0, 1716101252.0, 1716101313.0, 1716101374.0, 1716101435.0, 1716101496.0, 1716101557.0, 1716101618.0, 1716101679.0, 1716101740.0, 1716
[2024-05-19 03:39:42] 2024-05-19 07:39:19,900 | INFO     | sum of square deviations: 38744912.5
[2024-05-19 03:39:42] 2024-05-19 07:39:19,900 | INFO     | sum of deviations: 7103375000.499999
[2024-05-19 03:39:42] 2024-05-19 07:39:19,900 | INFO     | mean x: 1716102685.5
[2024-05-19 03:39:42] 2024-05-19 07:39:19,900 | INFO     | mean y: 2822490.78
[2024-05-19 03:39:42] 2024-05-19 07:39:19,900 | INFO     | -- intersect: -314622250271.2661
[2024-05-19 03:39:42] 2024-05-19 07:39:19,900 | INFO     | intersect: -314622250271.2661
[2024-05-19 03:39:42] 2024-05-19 07:39:19,900 | INFO     | chi2: 1.6257323443749006
[2024-05-19 03:39:42] 2024-05-19 07:39:19,900 | INFO     | -- intersect: -314622250271.2661
[2024-05-19 03:39:42] 2024-05-19 07:39:19,900 | INFO     | current memory leak: 183.34 B/s (using 50 data points, chi2=1.63)
[2024-05-19 03:39:42] 2024-05-19 07:39:19,900 | INFO     | ..............................
[2024-05-19 03:39:42] 2024-05-19 07:39:19,901 | INFO     | . Timing measurements:
[2024-05-19 03:39:42] 2024-05-19 07:39:19,901 | INFO     | . get job = 0 s
[2024-05-19 03:39:42] 2024-05-19 07:39:19,901 | INFO     | . initial setup = 1 s
[2024-05-19 03:39:42] 2024-05-19 07:39:19,901 | INFO     | . payload setup = 3 s
[2024-05-19 03:39:42] 2024-05-19 07:39:19,901 | INFO     | . stage-in = 0 s
[2024-05-19 03:39:42] 2024-05-19 07:39:19,901 | INFO     | . payload execution = 3465 s
[2024-05-19 03:39:42] 2024-05-19 07:39:19,901 | INFO     | . stage-out = 0 s
[2024-05-19 03:39:42] 2024-05-19 07:39:19,901 | INFO     | . log creation = 0 s
[2024-05-19 03:39:42] 2024-05-19 07:39:19,901 | INFO     | ..............................
[2024-05-19 03:39:42] 2024-05-19 07:39:20,077 | INFO     | 
[2024-05-19 03:39:42] 2024-05-19 07:39:20,077 | INFO     | job summary report
[2024-05-19 03:39:42] 2024-05-19 07:39:20,077 | INFO     | --------------------------------------------------
[2024-05-19 03:39:42] 2024-05-19 07:39:20,077 | INFO     | PanDA job id: 6208472739
[2024-05-19 03:39:42] 2024-05-19 07:39:20,077 | INFO     | task id: 38776104
[2024-05-19 03:39:42] 2024-05-19 07:39:20,077 | INFO     | errors: (none)
[2024-05-19 03:39:42] 2024-05-19 07:39:20,077 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-19 03:39:42] 2024-05-19 07:39:20,077 | INFO     | pilot state: finished 
[2024-05-19 03:39:42] 2024-05-19 07:39:20,077 | INFO     | transexitcode: 0
[2024-05-19 03:39:42] 2024-05-19 07:39:20,077 | INFO     | exeerrorcode: 0
[2024-05-19 03:39:42] 2024-05-19 07:39:20,077 | INFO     | exeerrordiag: 
[2024-05-19 03:39:42] 2024-05-19 07:39:20,077 | INFO     | exitcode: 0
[2024-05-19 03:39:42] 2024-05-19 07:39:20,077 | INFO     | exitmsg: OK
[2024-05-19 03:39:42] 2024-05-19 07:39:20,077 | INFO     | cpuconsumptiontime: 31812 s
[2024-05-19 03:39:42] 2024-05-19 07:39:20,078 | INFO     | nevents: 400
[2024-05-19 03:39:42] 2024-05-19 07:39:20,078 | INFO     | neventsw: 0
[2024-05-19 03:39:42] 2024-05-19 07:39:20,078 | INFO     | pid: 1205162
[2024-05-19 03:39:42] 2024-05-19 07:39:20,078 | INFO     | pgrp: 1205162
[2024-05-19 03:39:42] 2024-05-19 07:39:20,078 | INFO     | corecount: 12
[2024-05-19 03:39:42] 2024-05-19 07:39:20,078 | INFO     | event service: False
[2024-05-19 03:39:42] 2024-05-19 07:39:20,078 | INFO     | sizes: {0: 2392253, 2: 2392459, 11: 2392487, 3472: 2418058, 3473: 2427018, 3475: 2427074, 3480: 2427372}
[2024-05-19 03:39:42] 2024-05-19 07:39:20,078 | INFO     | --------------------------------------------------
[2024-05-19 03:39:42] 2024-05-19 07:39:20,078 | INFO     | 
[2024-05-19 03:39:42] 2024-05-19 07:39:20,078 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2024-05-19 03:39:42] 2024-05-19 07:39:20,097 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-19 03:39:42] 2024-05-19 07:39:20,097 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-19 03:39:42] 2024-05-19 07:39:20,098 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-19 03:39:42] 2024-05-19 07:39:20,098 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-19 03:39:42] 2024-05-19 07:39:20,098 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-19 03:39:42] 2024-05-19 07:39:20,098 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-19 03:39:42] 2024-05-19 07:39:20,098 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-19 03:39:42] 2024-05-19 07:39:20,098 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-19 03:39:42] 2024-05-19 07:39:20,098 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-19 03:39:42] 2024-05-19 07:39:20,098 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-19 03:39:42] 2024-05-19 07:39:20,098 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-19 03:39:42] 2024-05-19 07:39:20,098 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-19 03:39:42] 2024-05-19 07:39:20,098 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-19 03:39:42] 2024-05-19 07:39:20,098 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-19 03:39:42] 2024-05-19 07:39:20,099 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-19 03:39:42] 2024-05-19 07:39:20,099 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-19 03:39:42] 2024-05-19 07:39:20,099 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-19 03:39:42] 2024-05-19 07:39:20,099 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-19 03:39:42] 2024-05-19 07:39:20,099 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-19 03:39:42] 2024-05-19 07:39:20,099 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-19 03:39:42] 2024-05-19 07:39:20,099 | INFO     | job 6208472739 has completed (purged errors)
[2024-05-19 03:39:42] 2024-05-19 07:39:20,099 | INFO     | overall cleanup function is called
[2024-05-19 03:39:42] 2024-05-19 07:39:21,102 | INFO     | --- collectZombieJob: --- 10, [1205162]
[2024-05-19 03:39:42] 2024-05-19 07:39:21,103 | INFO     | zombie collector waiting for pid 1205162
[2024-05-19 03:39:42] 2024-05-19 07:39:21,103 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-19 03:39:42] 2024-05-19 07:39:21,780 | INFO     | 3496s have passed since pilot start
[2024-05-19 03:39:42] 2024-05-19 07:39:22,107 | INFO     | collected zombie processes
[2024-05-19 03:39:42] 2024-05-19 07:39:22,108 | INFO     | will now attempt to kill all subprocesses of pid=1205162
[2024-05-19 03:39:42] 2024-05-19 07:39:22,162 | INFO     | process IDs to be killed: [1205162] (in reverse order)
[2024-05-19 03:39:42] 2024-05-19 07:39:22,202 | WARNING  | found no corresponding commands to process id(s)
[2024-05-19 03:39:42] 2024-05-19 07:39:22,202 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-19 03:39:42] 2024-05-19 07:39:22,205 | INFO     | did not find any defunct processes belonging to 1205162
[2024-05-19 03:39:42] 2024-05-19 07:39:22,207 | INFO     | did not find any defunct processes belonging to 1205162
[2024-05-19 03:39:42] 2024-05-19 07:39:22,207 | INFO     | ready for new job
[2024-05-19 03:39:42] 2024-05-19 07:39:22,207 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-19 03:39:42] 2024-05-19 07:39:22,208 | INFO     | *************************************
[2024-05-19 03:39:42] 2024-05-19 07:39:22,208 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-19 03:39:42] 2024-05-19 07:39:22,208 | INFO     | *************************************
[2024-05-19 03:39:42] 2024-05-19 07:39:22,208 | INFO     | 
[2024-05-19 03:39:42] 2024-05-19 07:39:22,209 | INFO     | pilot is running in a VM
[2024-05-19 03:39:42] 2024-05-19 07:39:22,209 | INFO     | architecture information:
[2024-05-19 03:39:42] 2024-05-19 07:39:22,209 | INFO     | executing command: cat /etc/os-release
[2024-05-19 03:39:42] 2024-05-19 07:39:22,226 | INFO     | cat /etc/os-release:
[2024-05-19 03:39:42] NAME="CentOS Linux"
[2024-05-19 03:39:42] VERSION="7 (Core)"
[2024-05-19 03:39:42] ID="centos"
[2024-05-19 03:39:42] ID_LIKE="rhel fedora"
[2024-05-19 03:39:42] VERSION_ID="7"
[2024-05-19 03:39:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-19 03:39:42] ANSI_COLOR="0;31"
[2024-05-19 03:39:42] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-19 03:39:42] HOME_URL="https://www.centos.org/"
[2024-05-19 03:39:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-19 03:39:42] 
[2024-05-19 03:39:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-19 03:39:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-19 03:39:42] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-19 03:39:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-19 03:39:42] 
[2024-05-19 03:39:42] 2024-05-19 07:39:22,227 | INFO     | *************************************
[2024-05-19 03:39:42] 2024-05-19 07:39:22,729 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2024-05-19 03:39:42] 2024-05-19 07:39:22,747 | INFO     | sufficient remaining disk space (25823281152 B)
[2024-05-19 03:39:42] 2024-05-19 07:39:22,748 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-19 03:39:42] 2024-05-19 07:39:22,748 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-19 03:39:42] 2024-05-19 07:39:22,785 | INFO     | found 0 job(s) in 20 queues
[2024-05-19 03:39:42] 2024-05-19 07:39:22,785 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-19 03:39:42] 2024-05-19 07:39:22,785 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-19 03:39:42] 2024-05-19 07:39:22,866 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-19 03:39:42] 2024-05-19 07:39:22,975 | INFO     | all job control threads have been joined
[2024-05-19 03:39:42] 2024-05-19 07:39:23,112 | INFO     | all data control threads have been joined
[2024-05-19 03:39:42] 2024-05-19 07:39:23,124 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-19 03:39:42] 2024-05-19 07:39:23,124 | INFO     | aborting loop
[2024-05-19 03:39:42] 2024-05-19 07:39:23,749 | INFO     | [job] retrieve thread has finished
[2024-05-19 03:39:42] 2024-05-19 07:39:23,801 | INFO     | all payload control threads have been joined
[2024-05-19 03:39:42] 2024-05-19 07:39:23,980 | INFO     | [job] control thread has finished
[2024-05-19 03:39:42] 2024-05-19 07:39:24,002 | INFO     | [payload] validate_post thread has finished
[2024-05-19 03:39:42] 2024-05-19 07:39:24,106 | INFO     | [job] create_data_payload thread has finished
[2024-05-19 03:39:42] 2024-05-19 07:39:24,117 | INFO     | [data] control thread has finished
[2024-05-19 03:39:42] 2024-05-19 07:39:24,129 | INFO     | [job] job monitor thread has finished
[2024-05-19 03:39:42] 2024-05-19 07:39:24,262 | INFO     | [payload] validate_pre thread has finished
[2024-05-19 03:39:42] 2024-05-19 07:39:24,289 | INFO     | [job] validate thread has finished
[2024-05-19 03:39:42] 2024-05-19 07:39:24,731 | INFO     | [payload] failed_post thread has finished
[2024-05-19 03:39:42] 2024-05-19 07:39:24,764 | INFO     | [payload] execute_payloads thread has finished
[2024-05-19 03:39:42] 2024-05-19 07:39:24,806 | INFO     | [payload] control thread has finished
[2024-05-19 03:39:42] 2024-05-19 07:39:24,871 | INFO     | [data] copytool_out thread has finished
[2024-05-19 03:39:42] 2024-05-19 07:39:24,957 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-19 03:39:42] 2024-05-19 07:39:25,130 | INFO     | [data] copytool_in thread has finished
[2024-05-19 03:39:42] 2024-05-19 07:39:25,200 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-19 03:39:42] 2024-05-19 07:39:25,963 | INFO     | [job] queue monitor thread has finished
[2024-05-19 03:39:42] 2024-05-19 07:39:29,206 | INFO     | [data] queue_monitor thread has finished
[2024-05-19 03:39:42] 2024-05-19 07:39:33,580 | INFO     | job.realtimelogging is not enabled
[2024-05-19 03:39:42] 2024-05-19 07:39:34,585 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-19 03:39:42] 2024-05-19 07:39:36,477 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139804171450176)>', '<ExcThread(monitor, started 139803492329216)>']
[2024-05-19 03:39:42] 2024-05-19 07:39:36,857 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-19 03:39:42] 2024-05-19 07:39:36,857 | INFO     | [monitor] control thread has ended
[2024-05-19 03:39:42] 2024-05-19 07:39:41,502 | INFO     | all workflow threads have been joined
[2024-05-19 03:39:42] 2024-05-19 07:39:41,502 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-19 03:39:42] 2024-05-19 07:39:41,502 | INFO     | traces error code: 0
[2024-05-19 03:39:42] 2024-05-19 07:39:41,503 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-19 03:39:42] 2024-05-19 07:39:41,563 [wrapper] ==== pilot stdout END ====
[2024-05-19 03:39:42] 2024-05-19 07:39:41,565 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-19 03:39:42] 2024-05-19 07:39:41,567 [wrapper] pilotpid: 1198681
[2024-05-19 03:39:42] 2024-05-19 07:39:41,569 [wrapper] Pilot exit status: 0
[2024-05-19 03:39:42] 2024-05-19 07:39:41,579 [wrapper] pandaids: 6208472739
[2024-05-19 03:39:42] 2024-05-19 07:39:41,600 [wrapper] cleanup: SIGTERM to supervisor_pilot 1215352 1198682
[2024-05-19 03:39:42] 2024-05-19 07:39:41,602 [wrapper] Test setup, not cleaning
[2024-05-19 03:39:42] 2024-05-19 07:39:41,604 [wrapper] ==== wrapper stdout END ====
[2024-05-19 03:39:42] 2024-05-19 07:39:41,606 [wrapper] ==== wrapper stderr END ====
[2024-05-19 03:39:42] 2024-05-19 07:39:41,610 [wrapper] apfmon messages muted
[2024-05-19 03:39:42]  *** Error codes and diagnostics ***
[2024-05-19 03:39:42]     "exeErrorCode": 0,
[2024-05-19 03:39:42]     "exeErrorDiag": "",
[2024-05-19 03:39:42]     "pilotErrorCode": 0,
[2024-05-19 03:39:42]     "pilotErrorDiag": "",
[2024-05-19 03:39:42]  *** Listing of results directory ***
[2024-05-19 03:39:42] total 824140
[2024-05-19 03:39:42] -rw-r--r--. 1 boinc boinc    467845 May 17 21:53 pilot3.tar.gz
[2024-05-19 03:39:42] -rwx------. 1 boinc boinc     32251 May 17 22:14 runpilot2-wrapper.sh
[2024-05-19 03:39:42] -rw-r--r--. 1 boinc boinc      5633 May 17 22:14 queuedata.json
[2024-05-19 03:39:42] -rw-r--r--. 1 boinc boinc       100 May 19 02:40 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-19 03:39:42] -rwxr-xr-x. 1 boinc boinc      7986 May 19 02:40 run_atlas
[2024-05-19 03:39:42] -rw-r--r--. 1 boinc boinc       105 May 19 02:40 job.xml
[2024-05-19 03:39:42] -rw-r--r--. 2 boinc boinc    480005 May 19 02:40 input.tar.gz
[2024-05-19 03:39:42] -rw-r--r--. 1 boinc boinc      6167 May 19 02:40 init_data.xml
[2024-05-19 03:39:42] -rw-r--r--. 2 boinc boinc 602328138 May 19 02:40 EVNT.38776100._000231.pool.root.1
[2024-05-19 03:39:42] -rw-r--r--. 2 boinc boinc     17537 May 19 02:40 start_atlas.sh
[2024-05-19 03:39:42] drwxrwx--x. 2 boinc boinc        68 May 19 02:40 shared
[2024-05-19 03:39:42] -rw-r--r--. 1 boinc boinc         0 May 19 02:40 boinc_lockfile
[2024-05-19 03:39:42] -rw-r--r--. 1 boinc boinc      2642 May 19 02:40 pandaJob.out
[2024-05-19 03:39:42] -rw-------. 1 boinc boinc       424 May 19 02:40 setup.sh.local
[2024-05-19 03:39:42] -rw-------. 1 boinc boinc   1013987 May 19 02:41 agis_schedconf.cvmfs.json
[2024-05-19 03:39:42] -rw-------. 1 boinc boinc         0 May 19 02:41 agis_ddmendpoints.agis.ALL.json
[2024-05-19 03:39:42] -rw-------. 1 boinc boinc   1324701 May 19 02:41 cric_ddmendpoints.json
[2024-05-19 03:39:42] drwx------. 4 boinc boinc      4096 May 19 02:41 pilot3
[2024-05-19 03:39:42] -rw-------. 1 boinc boinc 236656849 May 19 03:38 HITS.38776104._015082.pool.root.1
[2024-05-19 03:39:42] -rw-r--r--. 1 boinc boinc       530 May 19 03:38 boinc_task_state.xml
[2024-05-19 03:39:42] -rw-------. 1 boinc boinc      1040 May 19 03:39 memory_monitor_summary.json
[2024-05-19 03:39:42] -rw-------. 1 boinc boinc    364764 May 19 03:39 log.38776104._015082.job.log.tgz.1
[2024-05-19 03:39:42] -rw-r--r--. 1 boinc boinc      8192 May 19 03:39 boinc_mmap_file
[2024-05-19 03:39:42] -rw-r--r--. 1 boinc boinc        27 May 19 03:39 wrapper_checkpoint.txt
[2024-05-19 03:39:42] -rw-------. 1 boinc boinc      7737 May 19 03:39 heartbeat.json
[2024-05-19 03:39:42] -rw-------. 1 boinc boinc        95 May 19 03:39 pilot_heartbeat.json
[2024-05-19 03:39:42] -rw-------. 1 boinc boinc      4345 May 19 03:39 pilotlog.txt
[2024-05-19 03:39:42] -rw-------. 1 boinc boinc    344735 May 19 03:39 log.38776104._015082.job.log.1
[2024-05-19 03:39:42] -rw-------. 1 boinc boinc       357 May 19 03:39 output.list
[2024-05-19 03:39:42] -rw-r--r--. 1 boinc boinc       620 May 19 03:39 runtime_log
[2024-05-19 03:39:42] -rw-------. 1 boinc boinc    727040 May 19 03:39 result.tar.gz
[2024-05-19 03:39:42] -rw-r--r--. 1 boinc boinc     10988 May 19 03:39 runtime_log.err
[2024-05-19 03:39:42] -rw-------. 1 boinc boinc       643 May 19 03:39 dhcNDm2lOS5nsSi4apGgGQJmABFKDmABFKDm4ySLDmLtRKDm7O4kNn.diag
[2024-05-19 03:39:42] -rw-r--r--. 1 boinc boinc     21902 May 19 03:39 stderr.txt
[2024-05-19 03:39:42] HITS file was successfully produced:
[2024-05-19 03:39:42] -rw-------. 1 boinc boinc 236656849 May 19 03:38 shared/HITS.pool.root.1
[2024-05-19 03:39:42]  *** Contents of shared directory: ***
[2024-05-19 03:39:42] total 820528
[2024-05-19 03:39:42] -rw-r--r--. 2 boinc boinc    480005 May 19 02:40 input.tar.gz
[2024-05-19 03:39:42] -rw-r--r--. 2 boinc boinc 602328138 May 19 02:40 ATLAS.root_0
[2024-05-19 03:39:42] -rw-r--r--. 2 boinc boinc     17537 May 19 02:40 start_atlas.sh
[2024-05-19 03:39:42] -rw-------. 1 boinc boinc 236656849 May 19 03:38 HITS.pool.root.1
[2024-05-19 03:39:42] -rw-------. 1 boinc boinc    727040 May 19 03:39 result.tar.gz
03:39:43 (1194484): run_atlas exited; CPU time 31793.897392
03:39:43 (1194484): called boinc_finish(0)

</stderr_txt>
]]>

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