Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
21:47:16 (732194): wrapper (7.7.26015): starting
21:47:16 (732194): wrapper: running run_atlas (--nthreads 6)
[2024-05-20 21:47:16] Arguments: --nthreads 6
[2024-05-20 21:47:16] Threads: 6
[2024-05-20 21:47:16] Checking for CVMFS
[2024-05-20 21:47:16] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-20 21:47:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-20 21:47:16] Running cvmfs_config stat atlas.cern.ch
[2024-05-20 21:47:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-20 21:47:17] 2.10.1.0 2030 3486 66332 132960 3 56 5713915 6144000 0 130560 0 3073453 99.990 420454 8195 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.202:3128 1
[2024-05-20 21:47:17] CVMFS is ok
[2024-05-20 21:47:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-20 21:47:17] Checking for apptainer binary...
[2024-05-20 21:47:17] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-20 21:47:17] Running /usr/bin/apptainer --version
[2024-05-20 21:47:17] apptainer version 1.3.0
[2024-05-20 21:47:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-20 21:47:17] Beta
[2024-05-20 21:47:17] apptainer works
[2024-05-20 21:47:17] Set ATHENA_PROC_NUMBER=6
[2024-05-20 21:47:17] Set ATHENA_CORE_NUMBER=6
[2024-05-20 21:47:17] Starting ATLAS job with PandaID=6208472532
[2024-05-20 21:47:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-20 23:09:01]  *** The last 200 lines of the pilot log: ***
[2024-05-20 23:09:01]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-20 23:09:01]  is_tar=False
[2024-05-20 23:09:01]  lfn=log.38776104._015022.job.log.tgz.1
[2024-05-20 23:09:01]  mtime=0
[2024-05-20 23:09:01]  protocol_id=None
[2024-05-20 23:09:01]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-20 23:09:01]  replicas=None
[2024-05-20 23:09:01]  scope=mc23_13p6TeV
[2024-05-20 23:09:01]  status=None
[2024-05-20 23:09:01]  status_code=0
[2024-05-20 23:09:01]  storage_token=
[2024-05-20 23:09:01]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6208472532/log.38776104._015022.job.log.tgz.1
[2024-05-20 23:09:01]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/54/29/log.38776104._015022.job.log.tgz.1
[2024-05-20 23:09:01]  workdir=None
[2024-05-20 23:09:01] ]
[2024-05-20 23:09:01] 2024-05-20 21:08:30,554 | INFO     | transferring file log.38776104._015022.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6208472532/log.38776104._015022.job.log.tgz.1 to /var/lib/boinc/slots/
[2024-05-20 23:09:01] 2024-05-20 21:08:30,554 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6208472532/log.38776104._015022.job.log.tgz.1 /var/lib/boinc/slots/0/log.38776104._015022.job
[2024-05-20 23:09:01] 2024-05-20 21:08:30,564 | INFO     | adding to output.list: log.38776104._015022.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/54/29/log.38776104._015022.job.log.tg
[2024-05-20 23:09:01] 2024-05-20 21:08:30,564 | INFO     | summary of transferred files:
[2024-05-20 23:09:01] 2024-05-20 21:08:30,564 | INFO     |  -- lfn=log.38776104._015022.job.log.tgz.1, status_code=0, status=transferred
[2024-05-20 23:09:01] 2024-05-20 21:08:30,564 | INFO     | stage-out finished correctly
[2024-05-20 23:09:01] 2024-05-20 21:08:31,632 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-20 23:09:01] 2024-05-20 21:08:31,779 | INFO     | monitor loop #389: job 0:6208472532 is in state 'finished'
[2024-05-20 23:09:01] 2024-05-20 21:08:31,779 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-20 23:09:01] 2024-05-20 21:08:34,007 | INFO     | job 6208472532 has state=finished
[2024-05-20 23:09:01] 2024-05-20 21:08:34,008 | INFO     | preparing for final server update for job 6208472532 in state='finished'
[2024-05-20 23:09:01] 2024-05-20 21:08:34,008 | INFO     | this job has now completed (state=finished)
[2024-05-20 23:09:01] 2024-05-20 21:08:34,009 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-20 23:09:01] 2024-05-20 21:08:34,009 | INFO     | job 6208472532 has finished - writing final server update
[2024-05-20 23:09:01] 2024-05-20 21:08:34,009 | INFO     | total number of processed events: 400 (read)
[2024-05-20 23:09:01] 2024-05-20 21:08:34,013 | INFO     | executing command: lscpu
[2024-05-20 23:09:01] 2024-05-20 21:08:34,047 | INFO     | found 4 cores (4 cores per socket, 1 sockets)
[2024-05-20 23:09:01] 2024-05-20 21:08:34,047 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-20 23:09:01] 2024-05-20 21:08:34,065 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-20 23:09:01] 2024-05-20 21:08:34,281 | INFO     | monitor loop #390: job 0:6208472532 is in state 'finished'
[2024-05-20 23:09:01] 2024-05-20 21:08:34,281 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-20 23:09:01] 2024-05-20 21:08:36,785 | INFO     | monitor loop #391: job 0:6208472532 is in state 'finished'
[2024-05-20 23:09:01] 2024-05-20 21:08:36,785 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-20 23:09:01] 2024-05-20 21:08:39,288 | INFO     | monitor loop #392: job 0:6208472532 is in state 'finished'
[2024-05-20 23:09:01] 2024-05-20 21:08:39,288 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-20 23:09:01] 2024-05-20 21:08:40,658 | INFO     | CPU arch script returned: x86-64-v3
[2024-05-20 23:09:01] 2024-05-20 21:08:40,658 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6208472532/memory_monitor_summary.json (trf name=prmon)
[2024-05-20 23:09:01] 2024-05-20 21:08:40,658 | INFO     | extracted standard info from prmon json
[2024-05-20 23:09:01] 2024-05-20 21:08:40,658 | INFO     | extracted standard memory fields from prmon json
[2024-05-20 23:09:01] 2024-05-20 21:08:40,658 | WARNING  | GPU info not found in prmon json
[2024-05-20 23:09:01] 2024-05-20 21:08:40,659 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-20 23:09:01] 2024-05-20 21:08:40,659 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-20 23:09:01] 2024-05-20 21:08:40,659 | INFO     | fitting pss+swap vs Time
[2024-05-20 23:09:01] 2024-05-20 21:08:40,660 | INFO     | model: linear, x: [1716234766.0, 1716234827.0, 1716234888.0, 1716234949.0, 1716235010.0, 1716235071.0, 1716235132.0, 1716235193.0, 1716235254.0, 1716235315.0, 1716
[2024-05-20 23:09:01] 2024-05-20 21:08:40,660 | INFO     | sum of square deviations: 120605052.0
[2024-05-20 23:09:01] 2024-05-20 21:08:40,660 | INFO     | sum of deviations: -10767654242.0
[2024-05-20 23:09:01] 2024-05-20 21:08:40,660 | INFO     | mean x: 1716236962.0
[2024-05-20 23:09:01] 2024-05-20 21:08:40,660 | INFO     | mean y: 2654121.712328767
[2024-05-20 23:09:01] 2024-05-20 21:08:40,660 | INFO     | -- intersect: 153228790985.0047
[2024-05-20 23:09:01] 2024-05-20 21:08:40,660 | INFO     | intersect: 153228790985.0047
[2024-05-20 23:09:01] 2024-05-20 21:08:40,660 | INFO     | chi2: 0.15324579078595074
[2024-05-20 23:09:01] 2024-05-20 21:08:40,660 | INFO     | -- intersect: 153228790985.0047
[2024-05-20 23:09:01] 2024-05-20 21:08:40,660 | INFO     | current memory leak: -89.28 B/s (using 73 data points, chi2=0.15)
[2024-05-20 23:09:01] 2024-05-20 21:08:40,660 | INFO     | ..............................
[2024-05-20 23:09:01] 2024-05-20 21:08:40,660 | INFO     | . Timing measurements:
[2024-05-20 23:09:01] 2024-05-20 21:08:40,660 | INFO     | . get job = 0 s
[2024-05-20 23:09:01] 2024-05-20 21:08:40,660 | INFO     | . initial setup = 0 s
[2024-05-20 23:09:01] 2024-05-20 21:08:40,661 | INFO     | . payload setup = 3 s
[2024-05-20 23:09:01] 2024-05-20 21:08:40,661 | INFO     | . stage-in = 0 s
[2024-05-20 23:09:01] 2024-05-20 21:08:40,661 | INFO     | . payload execution = 4847 s
[2024-05-20 23:09:01] 2024-05-20 21:08:40,661 | INFO     | . stage-out = 0 s
[2024-05-20 23:09:01] 2024-05-20 21:08:40,661 | INFO     | . log creation = 0 s
[2024-05-20 23:09:01] 2024-05-20 21:08:40,661 | INFO     | ..............................
[2024-05-20 23:09:01] 2024-05-20 21:08:40,698 | INFO     | 
[2024-05-20 23:09:01] 2024-05-20 21:08:40,698 | INFO     | job summary report
[2024-05-20 23:09:01] 2024-05-20 21:08:40,698 | INFO     | --------------------------------------------------
[2024-05-20 23:09:01] 2024-05-20 21:08:40,698 | INFO     | PanDA job id: 6208472532
[2024-05-20 23:09:01] 2024-05-20 21:08:40,698 | INFO     | task id: 38776104
[2024-05-20 23:09:01] 2024-05-20 21:08:40,698 | INFO     | errors: (none)
[2024-05-20 23:09:01] 2024-05-20 21:08:40,698 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-20 23:09:01] 2024-05-20 21:08:40,698 | INFO     | pilot state: finished 
[2024-05-20 23:09:01] 2024-05-20 21:08:40,698 | INFO     | transexitcode: 0
[2024-05-20 23:09:01] 2024-05-20 21:08:40,698 | INFO     | exeerrorcode: 0
[2024-05-20 23:09:01] 2024-05-20 21:08:40,698 | INFO     | exeerrordiag: 
[2024-05-20 23:09:01] 2024-05-20 21:08:40,698 | INFO     | exitcode: 0
[2024-05-20 23:09:01] 2024-05-20 21:08:40,698 | INFO     | exitmsg: OK
[2024-05-20 23:09:01] 2024-05-20 21:08:40,698 | INFO     | cpuconsumptiontime: 27062 s
[2024-05-20 23:09:01] 2024-05-20 21:08:40,698 | INFO     | nevents: 400
[2024-05-20 23:09:01] 2024-05-20 21:08:40,699 | INFO     | neventsw: 0
[2024-05-20 23:09:01] 2024-05-20 21:08:40,699 | INFO     | pid: 742821
[2024-05-20 23:09:01] 2024-05-20 21:08:40,699 | INFO     | pgrp: 742821
[2024-05-20 23:09:01] 2024-05-20 21:08:40,699 | INFO     | corecount: 6
[2024-05-20 23:09:01] 2024-05-20 21:08:40,699 | INFO     | event service: False
[2024-05-20 23:09:01] 2024-05-20 21:08:40,699 | INFO     | sizes: {0: 2392032, 1: 2392231, 3: 2392437, 11: 2392465, 4854: 2418692, 4856: 2427652, 4857: 2427836, 4866: 2428006}
[2024-05-20 23:09:01] 2024-05-20 21:08:40,699 | INFO     | --------------------------------------------------
[2024-05-20 23:09:01] 2024-05-20 21:08:40,699 | INFO     | 
[2024-05-20 23:09:01] 2024-05-20 21:08:40,699 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2024-05-20 23:09:01] 2024-05-20 21:08:40,711 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-20 23:09:01] 2024-05-20 21:08:40,711 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-20 23:09:01] 2024-05-20 21:08:40,711 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-20 23:09:01] 2024-05-20 21:08:40,711 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-20 23:09:01] 2024-05-20 21:08:40,711 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-20 23:09:01] 2024-05-20 21:08:40,711 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-20 23:09:01] 2024-05-20 21:08:40,712 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-20 23:09:01] 2024-05-20 21:08:40,712 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-20 23:09:01] 2024-05-20 21:08:40,712 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-20 23:09:01] 2024-05-20 21:08:40,712 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-20 23:09:01] 2024-05-20 21:08:40,712 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-20 23:09:01] 2024-05-20 21:08:40,712 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-20 23:09:01] 2024-05-20 21:08:40,712 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-20 23:09:01] 2024-05-20 21:08:40,712 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-20 23:09:01] 2024-05-20 21:08:40,712 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-20 23:09:01] 2024-05-20 21:08:40,712 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-20 23:09:01] 2024-05-20 21:08:40,712 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-20 23:09:01] 2024-05-20 21:08:40,712 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-20 23:09:01] 2024-05-20 21:08:40,712 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-20 23:09:01] 2024-05-20 21:08:40,712 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-20 23:09:01] 2024-05-20 21:08:40,713 | INFO     | job 6208472532 has completed (purged errors)
[2024-05-20 23:09:01] 2024-05-20 21:08:40,713 | INFO     | overall cleanup function is called
[2024-05-20 23:09:01] 2024-05-20 21:08:41,719 | INFO     | --- collectZombieJob: --- 10, [742821]
[2024-05-20 23:09:01] 2024-05-20 21:08:41,720 | INFO     | zombie collector waiting for pid 742821
[2024-05-20 23:09:01] 2024-05-20 21:08:41,720 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-20 23:09:01] 2024-05-20 21:08:42,725 | INFO     | collected zombie processes
[2024-05-20 23:09:01] 2024-05-20 21:08:42,726 | INFO     | will now attempt to kill all subprocesses of pid=742821
[2024-05-20 23:09:01] 2024-05-20 21:08:42,768 | INFO     | process IDs to be killed: [742821] (in reverse order)
[2024-05-20 23:09:01] 2024-05-20 21:08:42,791 | WARNING  | found no corresponding commands to process id(s)
[2024-05-20 23:09:01] 2024-05-20 21:08:42,792 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-20 23:09:01] 2024-05-20 21:08:42,793 | INFO     | did not find any defunct processes belonging to 742821
[2024-05-20 23:09:01] 2024-05-20 21:08:42,794 | INFO     | did not find any defunct processes belonging to 742821
[2024-05-20 23:09:01] 2024-05-20 21:08:42,795 | INFO     | ready for new job
[2024-05-20 23:09:01] 2024-05-20 21:08:42,795 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-20 23:09:01] 2024-05-20 21:08:42,795 | INFO     | *************************************
[2024-05-20 23:09:01] 2024-05-20 21:08:42,795 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-20 23:09:01] 2024-05-20 21:08:42,796 | INFO     | *************************************
[2024-05-20 23:09:01] 2024-05-20 21:08:42,796 | INFO     | 
[2024-05-20 23:09:01] 2024-05-20 21:08:42,796 | INFO     | architecture information:
[2024-05-20 23:09:01] 2024-05-20 21:08:42,796 | INFO     | executing command: cat /etc/os-release
[2024-05-20 23:09:01] 2024-05-20 21:08:42,804 | INFO     | cat /etc/os-release:
[2024-05-20 23:09:01] NAME="CentOS Linux"
[2024-05-20 23:09:01] VERSION="7 (Core)"
[2024-05-20 23:09:01] ID="centos"
[2024-05-20 23:09:01] ID_LIKE="rhel fedora"
[2024-05-20 23:09:01] VERSION_ID="7"
[2024-05-20 23:09:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-20 23:09:01] ANSI_COLOR="0;31"
[2024-05-20 23:09:01] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-20 23:09:01] HOME_URL="https://www.centos.org/"
[2024-05-20 23:09:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-20 23:09:01] 
[2024-05-20 23:09:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-20 23:09:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-20 23:09:01] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-20 23:09:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-20 23:09:01] 
[2024-05-20 23:09:01] 2024-05-20 21:08:42,805 | INFO     | *************************************
[2024-05-20 23:09:01] 2024-05-20 21:08:43,308 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2024-05-20 23:09:01] 2024-05-20 21:08:43,335 | INFO     | sufficient remaining disk space (273263099904 B)
[2024-05-20 23:09:01] 2024-05-20 21:08:43,336 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-20 23:09:01] 2024-05-20 21:08:43,336 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-20 23:09:01] 2024-05-20 21:08:43,337 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-20 23:09:01] 2024-05-20 21:08:43,337 | INFO     | aborting loop
[2024-05-20 23:09:01] 2024-05-20 21:08:43,337 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-20 23:09:01] 2024-05-20 21:08:43,338 | INFO     | found 0 job(s) in 20 queues
[2024-05-20 23:09:01] 2024-05-20 21:08:43,338 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-20 23:09:01] 2024-05-20 21:08:43,338 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-20 23:09:01] 2024-05-20 21:08:43,595 | INFO     | all data control threads have been joined
[2024-05-20 23:09:01] 2024-05-20 21:08:43,619 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-20 23:09:01] 2024-05-20 21:08:44,021 | INFO     | all job control threads have been joined
[2024-05-20 23:09:01] 2024-05-20 21:08:44,342 | INFO     | [job] retrieve thread has finished
[2024-05-20 23:09:01] 2024-05-20 21:08:44,343 | INFO     | [job] job monitor thread has finished
[2024-05-20 23:09:01] 2024-05-20 21:08:44,390 | INFO     | [payload] validate_post thread has finished
[2024-05-20 23:09:01] 2024-05-20 21:08:44,400 | INFO     | all payload control threads have been joined
[2024-05-20 23:09:01] 2024-05-20 21:08:44,601 | INFO     | [data] control thread has finished
[2024-05-20 23:09:01] 2024-05-20 21:08:44,738 | INFO     | [payload] failed_post thread has finished
[2024-05-20 23:09:01] 2024-05-20 21:08:44,947 | INFO     | [payload] execute_payloads thread has finished
[2024-05-20 23:09:01] 2024-05-20 21:08:44,953 | INFO     | [data] copytool_in thread has finished
[2024-05-20 23:09:01] 2024-05-20 21:08:45,027 | INFO     | [job] control thread has finished
[2024-05-20 23:09:01] 2024-05-20 21:08:45,406 | INFO     | [payload] control thread has finished
[2024-05-20 23:09:01] 2024-05-20 21:08:45,626 | INFO     | [data] copytool_out thread has finished
[2024-05-20 23:09:01] 2024-05-20 21:08:45,682 | INFO     | [job] create_data_payload thread has finished
[2024-05-20 23:09:01] 2024-05-20 21:08:45,691 | INFO     | [job] validate thread has finished
[2024-05-20 23:09:01] 2024-05-20 21:08:45,710 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-20 23:09:01] 2024-05-20 21:08:45,737 | INFO     | [payload] validate_pre thread has finished
[2024-05-20 23:09:01] 2024-05-20 21:08:46,687 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-20 23:09:01] 2024-05-20 21:08:46,716 | INFO     | [job] queue monitor thread has finished
[2024-05-20 23:09:01] 2024-05-20 21:08:50,694 | INFO     | [data] queue_monitor thread has finished
[2024-05-20 23:09:01] 2024-05-20 21:08:53,944 | INFO     | job.realtimelogging is not enabled
[2024-05-20 23:09:01] 2024-05-20 21:08:54,949 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-20 23:09:01] 2024-05-20 21:08:56,536 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139838604830528)>', '<ExcThread(monitor, started 139838137288448)>']
[2024-05-20 23:09:01] 2024-05-20 21:08:57,413 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-20 23:09:01] 2024-05-20 21:08:57,413 | INFO     | [monitor] control thread has ended
[2024-05-20 23:09:01] 2024-05-20 21:09:01,562 | INFO     | all workflow threads have been joined
[2024-05-20 23:09:01] 2024-05-20 21:09:01,562 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-20 23:09:01] 2024-05-20 21:09:01,563 | INFO     | traces error code: 0
[2024-05-20 23:09:01] 2024-05-20 21:09:01,563 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-20 23:09:01] 2024-05-20 21:09:01,616 [wrapper] ==== pilot stdout END ====
[2024-05-20 23:09:01] 2024-05-20 21:09:01,618 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-20 23:09:01] 2024-05-20 21:09:01,619 [wrapper] pilotpid: 736381
[2024-05-20 23:09:01] 2024-05-20 21:09:01,621 [wrapper] Pilot exit status: 0
[2024-05-20 23:09:01] 2024-05-20 21:09:01,627 [wrapper] pandaids: 6208472532
[2024-05-20 23:09:01] 2024-05-20 21:09:01,641 [wrapper] cleanup: SIGTERM to supervisor_pilot  755160 736382
[2024-05-20 23:09:01] 2024-05-20 21:09:01,643 [wrapper] Test setup, not cleaning
[2024-05-20 23:09:01] 2024-05-20 21:09:01,644 [wrapper] ==== wrapper stdout END ====
[2024-05-20 23:09:01] 2024-05-20 21:09:01,646 [wrapper] ==== wrapper stderr END ====
[2024-05-20 23:09:01] 2024-05-20 21:09:01,649 [wrapper] apfmon messages muted
[2024-05-20 23:09:01]  *** Error codes and diagnostics ***
[2024-05-20 23:09:01]     "exeErrorCode": 0,
[2024-05-20 23:09:01]     "exeErrorDiag": "",
[2024-05-20 23:09:01]     "pilotErrorCode": 0,
[2024-05-20 23:09:01]     "pilotErrorDiag": "",
[2024-05-20 23:09:01]  *** Listing of results directory ***
[2024-05-20 23:09:01] insgesamt 821540
[2024-05-20 23:09:01] -rw-r--r-- 1 boinc boinc    467845 18. Mai 03:53 pilot3.tar.gz
[2024-05-20 23:09:01] -rwx------ 1 boinc boinc     32251 18. Mai 04:02 runpilot2-wrapper.sh
[2024-05-20 23:09:01] -rw-r--r-- 1 boinc boinc      5633 18. Mai 04:02 queuedata.json
[2024-05-20 23:09:01] -rw-r--r-- 1 boinc boinc       100 20. Mai 21:47 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-20 23:09:01] -rwxr-xr-x 1 boinc boinc      7986 20. Mai 21:47 run_atlas
[2024-05-20 23:09:01] -rw-r--r-- 1 boinc boinc       105 20. Mai 21:47 job.xml
[2024-05-20 23:09:01] -rw-r--r-- 2 boinc boinc 603581522 20. Mai 21:47 EVNT.38776100._000214.pool.root.1
[2024-05-20 23:09:01] -rw-r--r-- 1 boinc boinc      6703 20. Mai 21:47 init_data.xml
[2024-05-20 23:09:01] drwxrwx--x 2 boinc boinc      4096 20. Mai 21:47 shared
[2024-05-20 23:09:01] -rw-r--r-- 2 boinc boinc    480009 20. Mai 21:47 input.tar.gz
[2024-05-20 23:09:01] -rw-r--r-- 2 boinc boinc     17537 20. Mai 21:47 start_atlas.sh
[2024-05-20 23:09:01] -rw-r--r-- 1 boinc boinc         0 20. Mai 21:47 boinc_lockfile
[2024-05-20 23:09:01] -rw-r--r-- 1 boinc boinc      2642 20. Mai 21:47 pandaJob.out
[2024-05-20 23:09:01] -rw------- 1 boinc boinc       462 20. Mai 21:47 setup.sh.local
[2024-05-20 23:09:01] -rw------- 1 boinc boinc   1014379 20. Mai 21:47 agis_schedconf.cvmfs.json
[2024-05-20 23:09:01] -rw------- 1 boinc boinc         0 20. Mai 21:47 agis_ddmendpoints.agis.ALL.json
[2024-05-20 23:09:01] -rw------- 1 boinc boinc   1324701 20. Mai 21:47 cric_ddmendpoints.json
[2024-05-20 23:09:01] drwx------ 4 boinc boinc      4096 20. Mai 21:47 pilot3
[2024-05-20 23:09:01] -rw------- 1 boinc boinc 232606219 20. Mai 23:08 HITS.38776104._015022.pool.root.1
[2024-05-20 23:09:01] -rw-r--r-- 1 boinc boinc       530 20. Mai 23:08 boinc_task_state.xml
[2024-05-20 23:09:01] -rw------- 1 boinc boinc      1019 20. Mai 23:08 memory_monitor_summary.json
[2024-05-20 23:09:01] -rw------- 1 boinc boinc    277253 20. Mai 23:08 log.38776104._015022.job.log.tgz.1
[2024-05-20 23:09:01] -rw------- 1 boinc boinc        95 20. Mai 23:08 pilot_heartbeat.json
[2024-05-20 23:09:01] -rw------- 1 boinc boinc      7662 20. Mai 23:08 heartbeat.json
[2024-05-20 23:09:01] -rw-r--r-- 1 boinc boinc      8192 20. Mai 23:08 boinc_mmap_file
[2024-05-20 23:09:01] -rw-r--r-- 1 boinc boinc        27 20. Mai 23:08 wrapper_checkpoint.txt
[2024-05-20 23:09:01] -rw------- 1 boinc boinc      4407 20. Mai 23:09 pilotlog.txt
[2024-05-20 23:09:01] -rw------- 1 boinc boinc    494008 20. Mai 23:09 log.38776104._015022.job.log.1
[2024-05-20 23:09:01] -rw------- 1 boinc boinc       357 20. Mai 23:09 output.list
[2024-05-20 23:09:01] -rw-r--r-- 1 boinc boinc       620 20. Mai 23:09 runtime_log
[2024-05-20 23:09:01] -rw------- 1 boinc boinc    788480 20. Mai 23:09 result.tar.gz
[2024-05-20 23:09:01] -rw------- 1 boinc boinc       627 20. Mai 23:09 TaPMDmvZOS5n7Olcko1bjSoqABFKDmABFKDmOtvXDmN2ZKDmQxCZJm.diag
[2024-05-20 23:09:01] -rw-r--r-- 1 boinc boinc     11316 20. Mai 23:09 runtime_log.err
[2024-05-20 23:09:01] -rw-r--r-- 1 boinc boinc     21235 20. Mai 23:09 stderr.txt
[2024-05-20 23:09:01] HITS file was successfully produced:
[2024-05-20 23:09:01] -rw------- 1 boinc boinc 232606219 20. Mai 23:08 shared/HITS.pool.root.1
[2024-05-20 23:09:01]  *** Contents of shared directory: ***
[2024-05-20 23:09:01] insgesamt 817864
[2024-05-20 23:09:01] -rw-r--r-- 2 boinc boinc 603581522 20. Mai 21:47 ATLAS.root_0
[2024-05-20 23:09:01] -rw-r--r-- 2 boinc boinc    480009 20. Mai 21:47 input.tar.gz
[2024-05-20 23:09:01] -rw-r--r-- 2 boinc boinc     17537 20. Mai 21:47 start_atlas.sh
[2024-05-20 23:09:01] -rw------- 1 boinc boinc 232606219 20. Mai 23:08 HITS.pool.root.1
[2024-05-20 23:09:01] -rw------- 1 boinc boinc    788480 20. Mai 23:09 result.tar.gz
23:09:02 (732194): run_atlas exited; CPU time 27057.054535
23:09:02 (732194): called boinc_finish(0)

</stderr_txt>
]]>

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