Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
06:49:24 (44945): wrapper (7.7.26015): starting
06:49:24 (44945): wrapper: running run_atlas (--nthreads 12)
[2024-05-18 06:49:24] Arguments: --nthreads 12
[2024-05-18 06:49:24] Threads: 12
[2024-05-18 06:49:24] Checking for CVMFS
[2024-05-18 06:49:24] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-18 06:49:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-18 06:49:25] Running cvmfs_config stat atlas.cern.ch
[2024-05-18 06:49:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-18 06:49:25] 2.10.1.0 230128 184900 165104 132880 1 60 23691616 45568000 3745 130560 0 542433227 99.726 400905742 14598 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2024-05-18 06:49:25] CVMFS is ok
[2024-05-18 06:49:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-18 06:49:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-18 06:49:25] Further information can be found at the LHC@home message board.
[2024-05-18 06:49:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-18 06:49:25] Checking for apptainer binary...
[2024-05-18 06:49:25] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-18 06:49:25] Running /usr/bin/apptainer --version
[2024-05-18 06:49:25] apptainer version 1.1.8-1.el7
[2024-05-18 06:49:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-18 06:49:26] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0126.triumf.lcg
[2024-05-18 06:49:26] apptainer works
[2024-05-18 06:49:26] Set ATHENA_PROC_NUMBER=12
[2024-05-18 06:49:26] Set ATHENA_CORE_NUMBER=12
[2024-05-18 06:49:26] Starting ATLAS job with PandaID=6208471151
[2024-05-18 06:49:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-18 07:54:13]  *** The last 200 lines of the pilot log: ***
[2024-05-18 07:54:13]  filetype=log
[2024-05-18 07:54:13]  guid=5fa7813d-6c24-40a2-a5a5-5f4568844b25
[2024-05-18 07:54:13]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-18 07:54:13]  is_tar=False
[2024-05-18 07:54:13]  lfn=log.38776104._014945.job.log.tgz.1
[2024-05-18 07:54:13]  mtime=0
[2024-05-18 07:54:13]  protocol_id=None
[2024-05-18 07:54:13]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-18 07:54:13]  replicas=None
[2024-05-18 07:54:13]  scope=mc23_13p6TeV
[2024-05-18 07:54:13]  status=None
[2024-05-18 07:54:13]  status_code=0
[2024-05-18 07:54:13]  storage_token=
[2024-05-18 07:54:13]  surl=/home/boinc/slots/0/PanDA_Pilot-6208471151/log.38776104._014945.job.log.tgz.1
[2024-05-18 07:54:13]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d2/cd/log.38776104._014945.job.log.tgz.1
[2024-05-18 07:54:13]  workdir=None
[2024-05-18 07:54:13] ]
[2024-05-18 07:54:13] 2024-05-18 14:53:48,689 | INFO     | transferring file log.38776104._014945.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6208471151/log.38776104._014945.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-05-18 07:54:13] 2024-05-18 14:53:48,689 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6208471151/log.38776104._014945.job.log.tgz.1 /home/boinc/slots/0/log.38776104._014945.job.log.t
[2024-05-18 07:54:13] 2024-05-18 14:53:48,718 | INFO     | adding to output.list: log.38776104._014945.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d2/cd/log.38776104._014945.job.log.tg
[2024-05-18 07:54:13] 2024-05-18 14:53:48,719 | INFO     | summary of transferred files:
[2024-05-18 07:54:13] 2024-05-18 14:53:48,720 | INFO     |  -- lfn=log.38776104._014945.job.log.tgz.1, status_code=0, status=transferred
[2024-05-18 07:54:13] 2024-05-18 14:53:48,720 | INFO     | stage-out finished correctly
[2024-05-18 07:54:13] 2024-05-18 14:53:50,278 | WARNING  | process 55574 is no longer using CPU - aborting
[2024-05-18 07:54:13] 2024-05-18 14:53:50,278 | INFO     | will not send any job update
[2024-05-18 07:54:13] 2024-05-18 14:53:51,158 | INFO     | 3854s have passed since pilot start
[2024-05-18 07:54:13] 2024-05-18 14:53:52,233 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-18 07:54:13] 2024-05-18 14:53:52,305 | INFO     | job 6208471151 has state=finished
[2024-05-18 07:54:13] 2024-05-18 14:53:52,305 | INFO     | preparing for final server update for job 6208471151 in state='finished'
[2024-05-18 07:54:13] 2024-05-18 14:53:52,306 | INFO     | this job has now completed (state=finished)
[2024-05-18 07:54:13] 2024-05-18 14:53:52,306 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-18 07:54:13] 2024-05-18 14:53:52,306 | INFO     | job 6208471151 has finished - writing final server update
[2024-05-18 07:54:13] 2024-05-18 14:53:52,307 | INFO     | total number of processed events: 400 (read)
[2024-05-18 07:54:13] 2024-05-18 14:53:52,313 | INFO     | executing command: lscpu
[2024-05-18 07:54:13] 2024-05-18 14:53:52,369 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-18 07:54:13] 2024-05-18 14:53:52,369 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-18 07:54:13] 2024-05-18 14:53:52,426 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-18 07:54:13] 2024-05-18 14:53:52,788 | INFO     | monitor loop #306: job 0:6208471151 is in state 'finished'
[2024-05-18 07:54:13] 2024-05-18 14:53:52,789 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 07:54:13] 2024-05-18 14:53:55,292 | INFO     | monitor loop #307: job 0:6208471151 is in state 'finished'
[2024-05-18 07:54:13] 2024-05-18 14:53:55,293 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 07:54:13] 2024-05-18 14:53:57,285 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-18 07:54:13] 2024-05-18 14:53:57,286 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6208471151/memory_monitor_summary.json (trf name=prmon)
[2024-05-18 07:54:13] 2024-05-18 14:53:57,287 | INFO     | extracted standard info from prmon json
[2024-05-18 07:54:13] 2024-05-18 14:53:57,287 | INFO     | extracted standard memory fields from prmon json
[2024-05-18 07:54:13] 2024-05-18 14:53:57,288 | WARNING  | GPU info not found in prmon json
[2024-05-18 07:54:13] 2024-05-18 14:53:57,288 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-18 07:54:13] 2024-05-18 14:53:57,288 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-18 07:54:13] 2024-05-18 14:53:57,291 | INFO     | fitting pss+swap vs Time
[2024-05-18 07:54:13] 2024-05-18 14:53:57,291 | INFO     | model: linear, x: [1716040512.0, 1716040573.0, 1716040634.0, 1716040695.0, 1716040756.0, 1716040817.0, 1716040878.0, 1716040939.0, 1716041000.0, 1716041061.0, 1716
[2024-05-18 07:54:13] 2024-05-18 14:53:57,291 | INFO     | sum of square deviations: 54438230.0
[2024-05-18 07:54:13] 2024-05-18 14:53:57,292 | INFO     | sum of deviations: 17798920410.5
[2024-05-18 07:54:13] 2024-05-18 14:53:57,292 | INFO     | mean x: 1716042189.5
[2024-05-18 07:54:13] 2024-05-18 14:53:57,292 | INFO     | mean y: 2520031.625
[2024-05-18 07:54:13] 2024-05-18 14:53:57,292 | INFO     | -- intersect: -561068226610.4069
[2024-05-18 07:54:13] 2024-05-18 14:53:57,292 | INFO     | intersect: -561068226610.4069
[2024-05-18 07:54:13] 2024-05-18 14:53:57,292 | INFO     | chi2: 1.6890615899718233
[2024-05-18 07:54:13] 2024-05-18 14:53:57,293 | INFO     | -- intersect: -561068226610.4069
[2024-05-18 07:54:13] 2024-05-18 14:53:57,293 | INFO     | current memory leak: 326.96 B/s (using 56 data points, chi2=1.69)
[2024-05-18 07:54:13] 2024-05-18 14:53:57,293 | INFO     | ..............................
[2024-05-18 07:54:13] 2024-05-18 14:53:57,294 | INFO     | . Timing measurements:
[2024-05-18 07:54:13] 2024-05-18 14:53:57,294 | INFO     | . get job = 0 s
[2024-05-18 07:54:13] 2024-05-18 14:53:57,294 | INFO     | . initial setup = 2 s
[2024-05-18 07:54:13] 2024-05-18 14:53:57,294 | INFO     | . payload setup = 6 s
[2024-05-18 07:54:13] 2024-05-18 14:53:57,294 | INFO     | . stage-in = 0 s
[2024-05-18 07:54:13] 2024-05-18 14:53:57,294 | INFO     | . payload execution = 3821 s
[2024-05-18 07:54:13] 2024-05-18 14:53:57,294 | INFO     | . stage-out = 0 s
[2024-05-18 07:54:13] 2024-05-18 14:53:57,294 | INFO     | . log creation = 0 s
[2024-05-18 07:54:13] 2024-05-18 14:53:57,294 | INFO     | ..............................
[2024-05-18 07:54:13] 2024-05-18 14:53:57,623 | INFO     | 
[2024-05-18 07:54:13] 2024-05-18 14:53:57,623 | INFO     | job summary report
[2024-05-18 07:54:13] 2024-05-18 14:53:57,623 | INFO     | --------------------------------------------------
[2024-05-18 07:54:13] 2024-05-18 14:53:57,624 | INFO     | PanDA job id: 6208471151
[2024-05-18 07:54:13] 2024-05-18 14:53:57,624 | INFO     | task id: 38776104
[2024-05-18 07:54:13] 2024-05-18 14:53:57,624 | INFO     | errors: (none)
[2024-05-18 07:54:13] 2024-05-18 14:53:57,624 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-18 07:54:13] 2024-05-18 14:53:57,624 | INFO     | pilot state: finished 
[2024-05-18 07:54:13] 2024-05-18 14:53:57,624 | INFO     | transexitcode: 0
[2024-05-18 07:54:13] 2024-05-18 14:53:57,624 | INFO     | exeerrorcode: 0
[2024-05-18 07:54:13] 2024-05-18 14:53:57,624 | INFO     | exeerrordiag: 
[2024-05-18 07:54:13] 2024-05-18 14:53:57,624 | INFO     | exitcode: 0
[2024-05-18 07:54:13] 2024-05-18 14:53:57,625 | INFO     | exitmsg: OK
[2024-05-18 07:54:13] 2024-05-18 14:53:57,625 | INFO     | cpuconsumptiontime: 33928 s
[2024-05-18 07:54:13] 2024-05-18 14:53:57,625 | INFO     | nevents: 400
[2024-05-18 07:54:13] 2024-05-18 14:53:57,625 | INFO     | neventsw: 0
[2024-05-18 07:54:13] 2024-05-18 14:53:57,625 | INFO     | pid: 55574
[2024-05-18 07:54:13] 2024-05-18 14:53:57,625 | INFO     | pgrp: 55574
[2024-05-18 07:54:13] 2024-05-18 14:53:57,625 | INFO     | corecount: 12
[2024-05-18 07:54:13] 2024-05-18 14:53:57,625 | INFO     | event service: False
[2024-05-18 07:54:13] 2024-05-18 14:53:57,625 | INFO     | sizes: {0: 2391341, 1: 2392276, 6: 2392482, 11: 2392510, 3832: 2418139, 3833: 2418138, 3834: 2427276, 3838: 2427332, 3843: 2427502}
[2024-05-18 07:54:13] 2024-05-18 14:53:57,626 | INFO     | --------------------------------------------------
[2024-05-18 07:54:13] 2024-05-18 14:53:57,626 | INFO     | 
[2024-05-18 07:54:13] 2024-05-18 14:53:57,626 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-18 07:54:13] 2024-05-18 14:53:57,659 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-18 07:54:13] 2024-05-18 14:53:57,660 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-18 07:54:13] 2024-05-18 14:53:57,660 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-18 07:54:13] 2024-05-18 14:53:57,660 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-18 07:54:13] 2024-05-18 14:53:57,660 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-18 07:54:13] 2024-05-18 14:53:57,660 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-18 07:54:13] 2024-05-18 14:53:57,660 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-18 07:54:13] 2024-05-18 14:53:57,661 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-18 07:54:13] 2024-05-18 14:53:57,661 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-18 07:54:13] 2024-05-18 14:53:57,661 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-18 07:54:13] 2024-05-18 14:53:57,661 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-18 07:54:13] 2024-05-18 14:53:57,661 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-18 07:54:13] 2024-05-18 14:53:57,661 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-18 07:54:13] 2024-05-18 14:53:57,661 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-18 07:54:13] 2024-05-18 14:53:57,661 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-18 07:54:13] 2024-05-18 14:53:57,662 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-18 07:54:13] 2024-05-18 14:53:57,662 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-18 07:54:13] 2024-05-18 14:53:57,662 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-18 07:54:13] 2024-05-18 14:53:57,662 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-18 07:54:13] 2024-05-18 14:53:57,662 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-18 07:54:13] 2024-05-18 14:53:57,662 | INFO     | job 6208471151 has completed (purged errors)
[2024-05-18 07:54:13] 2024-05-18 14:53:57,663 | INFO     | overall cleanup function is called
[2024-05-18 07:54:13] 2024-05-18 14:53:58,673 | INFO     | --- collectZombieJob: --- 10, [55574]
[2024-05-18 07:54:13] 2024-05-18 14:53:58,673 | INFO     | zombie collector waiting for pid 55574
[2024-05-18 07:54:13] 2024-05-18 14:53:58,674 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-18 07:54:13] 2024-05-18 14:53:59,680 | INFO     | collected zombie processes
[2024-05-18 07:54:13] 2024-05-18 14:53:59,680 | INFO     | will now attempt to kill all subprocesses of pid=55574
[2024-05-18 07:54:13] 2024-05-18 14:53:59,783 | INFO     | process IDs to be killed: [55574] (in reverse order)
[2024-05-18 07:54:13] 2024-05-18 14:53:59,880 | WARNING  | found no corresponding commands to process id(s)
[2024-05-18 07:54:13] 2024-05-18 14:53:59,881 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-18 07:54:13] 2024-05-18 14:53:59,888 | INFO     | did not find any defunct processes belonging to 55574
[2024-05-18 07:54:13] 2024-05-18 14:53:59,894 | INFO     | did not find any defunct processes belonging to 55574
[2024-05-18 07:54:13] 2024-05-18 14:53:59,895 | INFO     | ready for new job
[2024-05-18 07:54:13] 2024-05-18 14:53:59,895 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-18 07:54:13] 2024-05-18 14:53:59,896 | INFO     | *************************************
[2024-05-18 07:54:13] 2024-05-18 14:53:59,896 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-18 07:54:13] 2024-05-18 14:53:59,896 | INFO     | *************************************
[2024-05-18 07:54:13] 2024-05-18 14:53:59,896 | INFO     | 
[2024-05-18 07:54:13] 2024-05-18 14:53:59,899 | INFO     | architecture information:
[2024-05-18 07:54:13] 2024-05-18 14:53:59,899 | INFO     | executing command: cat /etc/os-release
[2024-05-18 07:54:13] 2024-05-18 14:53:59,921 | INFO     | cat /etc/os-release:
[2024-05-18 07:54:13] NAME="CentOS Linux"
[2024-05-18 07:54:13] VERSION="7 (Core)"
[2024-05-18 07:54:13] ID="centos"
[2024-05-18 07:54:13] ID_LIKE="rhel fedora"
[2024-05-18 07:54:13] VERSION_ID="7"
[2024-05-18 07:54:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-18 07:54:13] ANSI_COLOR="0;31"
[2024-05-18 07:54:13] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-18 07:54:13] HOME_URL="https://www.centos.org/"
[2024-05-18 07:54:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-18 07:54:13] 
[2024-05-18 07:54:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-18 07:54:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-18 07:54:13] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-18 07:54:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-18 07:54:13] 
[2024-05-18 07:54:13] 2024-05-18 14:53:59,922 | INFO     | *************************************
[2024-05-18 07:54:13] 2024-05-18 14:54:00,425 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-18 07:54:13] 2024-05-18 14:54:00,453 | INFO     | sufficient remaining disk space (2239068372992 B)
[2024-05-18 07:54:13] 2024-05-18 14:54:00,454 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-18 07:54:13] 2024-05-18 14:54:00,454 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-18 07:54:13] 2024-05-18 14:54:00,455 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-18 07:54:13] 2024-05-18 14:54:00,455 | INFO     | found 0 job(s) in 20 queues
[2024-05-18 07:54:13] 2024-05-18 14:54:00,455 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-18 07:54:13] 2024-05-18 14:54:00,455 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-18 07:54:13] 2024-05-18 14:54:00,468 | INFO     | all job control threads have been joined
[2024-05-18 07:54:13] 2024-05-18 14:54:00,469 | INFO     | all data control threads have been joined
[2024-05-18 07:54:13] 2024-05-18 14:54:00,717 | INFO     | all payload control threads have been joined
[2024-05-18 07:54:13] 2024-05-18 14:54:01,309 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-18 07:54:13] 2024-05-18 14:54:01,309 | INFO     | aborting loop
[2024-05-18 07:54:13] 2024-05-18 14:54:01,460 | INFO     | [job] retrieve thread has finished
[2024-05-18 07:54:13] 2024-05-18 14:54:01,474 | INFO     | [job] control thread has finished
[2024-05-18 07:54:13] 2024-05-18 14:54:01,476 | INFO     | [data] control thread has finished
[2024-05-18 07:54:13] 2024-05-18 14:54:01,683 | INFO     | [job] validate thread has finished
[2024-05-18 07:54:13] 2024-05-18 14:54:01,723 | INFO     | [payload] control thread has finished
[2024-05-18 07:54:13] 2024-05-18 14:54:01,726 | INFO     | [job] create_data_payload thread has finished
[2024-05-18 07:54:13] 2024-05-18 14:54:01,743 | INFO     | [payload] execute_payloads thread has finished
[2024-05-18 07:54:13] 2024-05-18 14:54:01,813 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-18 07:54:13] 2024-05-18 14:54:02,089 | INFO     | [payload] validate_pre thread has finished
[2024-05-18 07:54:13] 2024-05-18 14:54:02,316 | INFO     | [job] job monitor thread has finished
[2024-05-18 07:54:13] 2024-05-18 14:54:02,382 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-18 07:54:13] 2024-05-18 14:54:02,638 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-18 07:54:13] 2024-05-18 14:54:02,687 | INFO     | [data] copytool_in thread has finished
[2024-05-18 07:54:13] 2024-05-18 14:54:02,718 | INFO     | [payload] validate_post thread has finished
[2024-05-18 07:54:13] 2024-05-18 14:54:02,817 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-18 07:54:13] 2024-05-18 14:54:03,012 | INFO     | [payload] failed_post thread has finished
[2024-05-18 07:54:13] 2024-05-18 14:54:03,388 | INFO     | [job] queue monitor thread has finished
[2024-05-18 07:54:13] 2024-05-18 14:54:03,819 | INFO     | [data] copytool_out thread has finished
[2024-05-18 07:54:13] 2024-05-18 14:54:06,824 | INFO     | [data] queue_monitor thread has finished
[2024-05-18 07:54:13] 2024-05-18 14:54:07,506 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140189389756224)>', '<ExcThread(monitor, started 140189108254464)>']
[2024-05-18 07:54:13] 2024-05-18 14:54:08,501 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-18 07:54:13] 2024-05-18 14:54:08,501 | INFO     | [monitor] control thread has ended
[2024-05-18 07:54:13] 2024-05-18 14:54:12,535 | INFO     | all workflow threads have been joined
[2024-05-18 07:54:13] 2024-05-18 14:54:12,535 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-18 07:54:13] 2024-05-18 14:54:12,535 | INFO     | traces error code: 0
[2024-05-18 07:54:13] 2024-05-18 14:54:12,536 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-18 07:54:13] 2024-05-18 14:54:12,607 [wrapper] ==== pilot stdout END ====
[2024-05-18 07:54:13] 2024-05-18 14:54:12,612 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-18 07:54:13] 2024-05-18 14:54:12,616 [wrapper] pilotpid: 49125
[2024-05-18 07:54:13] 2024-05-18 14:54:12,619 [wrapper] Pilot exit status: 0
[2024-05-18 07:54:13] 2024-05-18 14:54:12,634 [wrapper] pandaids: 6208471151
[2024-05-18 07:54:13] 2024-05-18 14:54:12,688 [wrapper] cleanup: SIGTERM to supervisor_pilot  96949 49126
[2024-05-18 07:54:13] 2024-05-18 14:54:12,691 [wrapper] Test setup, not cleaning
[2024-05-18 07:54:13] 2024-05-18 14:54:12,694 [wrapper] ==== wrapper stdout END ====
[2024-05-18 07:54:13] 2024-05-18 14:54:12,697 [wrapper] ==== wrapper stderr END ====
[2024-05-18 07:54:13] 2024-05-18 14:54:12,703 [wrapper] apfmon messages muted
[2024-05-18 07:54:13]  *** Error codes and diagnostics ***
[2024-05-18 07:54:13]     "exeErrorCode": 0,
[2024-05-18 07:54:13]     "exeErrorDiag": "",
[2024-05-18 07:54:13]     "pilotErrorCode": 0,
[2024-05-18 07:54:13]     "pilotErrorDiag": "",
[2024-05-18 07:54:13]  *** Listing of results directory ***
[2024-05-18 07:54:13] total 816852
[2024-05-18 07:54:13] -rw-r--r-- 1 boinc boinc    467845 May 17 18:34 pilot3.tar.gz
[2024-05-18 07:54:13] -rw-r--r-- 1 boinc boinc      5633 May 17 18:46 queuedata.json
[2024-05-18 07:54:13] -rwx------ 1 boinc boinc     32251 May 17 18:48 runpilot2-wrapper.sh
[2024-05-18 07:54:13] -rw-r--r-- 1 boinc boinc       100 May 18 06:49 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-18 07:54:13] -rwxr-xr-x 1 boinc boinc      7986 May 18 06:49 run_atlas
[2024-05-18 07:54:13] -rw-r--r-- 1 boinc boinc       105 May 18 06:49 job.xml
[2024-05-18 07:54:13] -rw-r--r-- 1 boinc boinc      6622 May 18 06:49 init_data.xml
[2024-05-18 07:54:13] -rw-r--r-- 2 boinc boinc 601512213 May 18 06:49 EVNT.38776100._000041.pool.root.1
[2024-05-18 07:54:13] -rw-r--r-- 2 boinc boinc     17537 May 18 06:49 start_atlas.sh
[2024-05-18 07:54:13] drwxrwx--x 2 boinc boinc      4096 May 18 06:49 shared
[2024-05-18 07:54:13] -rw-r--r-- 2 boinc boinc    480007 May 18 06:49 input.tar.gz
[2024-05-18 07:54:13] -rw-r--r-- 1 boinc boinc         0 May 18 06:49 boinc_lockfile
[2024-05-18 07:54:13] -rw-r--r-- 1 boinc boinc      2641 May 18 06:49 pandaJob.out
[2024-05-18 07:54:13] -rw------- 1 boinc boinc       424 May 18 06:49 setup.sh.local
[2024-05-18 07:54:13] -rw------- 1 boinc boinc   1019434 May 18 06:49 agis_schedconf.cvmfs.json
[2024-05-18 07:54:13] -rw------- 1 boinc boinc         0 May 18 06:49 agis_ddmendpoints.agis.ALL.json
[2024-05-18 07:54:13] -rw------- 1 boinc boinc   1324701 May 18 06:49 cric_ddmendpoints.json
[2024-05-18 07:54:13] drwx------ 4 boinc boinc      4096 May 18 06:49 pilot3
[2024-05-18 07:54:13] -rw------- 1 boinc boinc 229895470 May 18 07:53 HITS.38776104._014945.pool.root.1
[2024-05-18 07:54:13] -rw-r--r-- 1 boinc boinc       530 May 18 07:53 boinc_task_state.xml
[2024-05-18 07:54:13] -rw------- 1 boinc boinc      1039 May 18 07:53 memory_monitor_summary.json
[2024-05-18 07:54:13] -rw------- 1 boinc boinc        95 May 18 07:53 pilot_heartbeat.json
[2024-05-18 07:54:13] -rw------- 1 boinc boinc    360900 May 18 07:53 log.38776104._014945.job.log.tgz.1
[2024-05-18 07:54:13] -rw------- 1 boinc boinc      7749 May 18 07:53 heartbeat.json
[2024-05-18 07:54:13] -rw-r--r-- 1 boinc boinc        27 May 18 07:54 wrapper_checkpoint.txt
[2024-05-18 07:54:13] -rw-r--r-- 1 boinc boinc      8192 May 18 07:54 boinc_mmap_file
[2024-05-18 07:54:13] -rw------- 1 boinc boinc      4333 May 18 07:54 pilotlog.txt
[2024-05-18 07:54:13] -rw------- 1 boinc boinc    395525 May 18 07:54 log.38776104._014945.job.log.1
[2024-05-18 07:54:13] -rw------- 1 boinc boinc       357 May 18 07:54 output.list
[2024-05-18 07:54:13] -rw-r--r-- 1 boinc boinc       620 May 18 07:54 runtime_log
[2024-05-18 07:54:13] -rw------- 1 boinc boinc    778240 May 18 07:54 result.tar.gz
[2024-05-18 07:54:13] -rw------- 1 boinc boinc       651 May 18 07:54 wIdMDmsMOS5nsSi4apGgGQJmABFKDmABFKDm4ySLDm1rRKDmnt18Kn.diag
[2024-05-18 07:54:13] -rw-r--r-- 1 boinc boinc     11286 May 18 07:54 runtime_log.err
[2024-05-18 07:54:13] -rw-r--r-- 1 boinc boinc     21660 May 18 07:54 stderr.txt
[2024-05-18 07:54:13] HITS file was successfully produced:
[2024-05-18 07:54:13] -rw------- 1 boinc boinc 229895470 May 18 07:53 shared/HITS.pool.root.1
[2024-05-18 07:54:13]  *** Contents of shared directory: ***
[2024-05-18 07:54:13] total 813184
[2024-05-18 07:54:13] -rw-r--r-- 2 boinc boinc 601512213 May 18 06:49 ATLAS.root_0
[2024-05-18 07:54:13] -rw-r--r-- 2 boinc boinc     17537 May 18 06:49 start_atlas.sh
[2024-05-18 07:54:13] -rw-r--r-- 2 boinc boinc    480007 May 18 06:49 input.tar.gz
[2024-05-18 07:54:13] -rw------- 1 boinc boinc 229895470 May 18 07:53 HITS.pool.root.1
[2024-05-18 07:54:13] -rw------- 1 boinc boinc    778240 May 18 07:54 result.tar.gz
07:54:14 (44945): run_atlas exited; CPU time 33836.475106
07:54:14 (44945): called boinc_finish(0)

</stderr_txt>
]]>

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