Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
04:13:56 (231600): wrapper (7.7.26015): starting
04:13:56 (231600): wrapper: running run_atlas (--nthreads 12)
[2024-05-18 04:13:56] Arguments: --nthreads 12
[2024-05-18 04:13:56] Threads: 12
[2024-05-18 04:13:56] Checking for CVMFS
[2024-05-18 04:13:56] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-18 04:13:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-18 04:13:56] Running cvmfs_config stat atlas.cern.ch
[2024-05-18 04:13:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-18 04:13:56] 2.10.1.0 2809 173586 173012 132876 3 277 24988345 45568000 12049 130560 0 1113659334 99.762 705776575 16543 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2024-05-18 04:13:56] CVMFS is ok
[2024-05-18 04:13:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-18 04:13:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-18 04:13:56] Further information can be found at the LHC@home message board.
[2024-05-18 04:13:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-18 04:13:56] Checking for apptainer binary...
[2024-05-18 04:13:56] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-18 04:13:56] Running /usr/bin/apptainer --version
[2024-05-18 04:13:56] apptainer version 1.1.8-1.el7
[2024-05-18 04:13:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-18 04:13:57] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0075.triumf.lcg
[2024-05-18 04:13:57] apptainer works
[2024-05-18 04:13:57] Set ATHENA_PROC_NUMBER=12
[2024-05-18 04:13:57] Set ATHENA_CORE_NUMBER=12
[2024-05-18 04:13:57] Starting ATLAS job with PandaID=6208378401
[2024-05-18 04:13:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-18 05:08:51]  *** The last 200 lines of the pilot log: ***
[2024-05-18 05:08:51]  direct_access_lan=False
[2024-05-18 05:08:51]  direct_access_wan=False
[2024-05-18 05:08:51]  domain=
[2024-05-18 05:08:51]  filesize=346552
[2024-05-18 05:08:51]  filetype=log
[2024-05-18 05:08:51]  guid=392146a1-a5d2-4039-9967-40adec8c811e
[2024-05-18 05:08:51]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-18 05:08:51]  is_tar=False
[2024-05-18 05:08:51]  lfn=log.38776104._014908.job.log.tgz.1
[2024-05-18 05:08:51]  mtime=0
[2024-05-18 05:08:51]  protocol_id=None
[2024-05-18 05:08:51]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-18 05:08:51]  replicas=None
[2024-05-18 05:08:51]  scope=mc23_13p6TeV
[2024-05-18 05:08:51]  status=None
[2024-05-18 05:08:51]  status_code=0
[2024-05-18 05:08:51]  storage_token=
[2024-05-18 05:08:51]  surl=/home/boinc/slots/0/PanDA_Pilot-6208378401/log.38776104._014908.job.log.tgz.1
[2024-05-18 05:08:51]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/20/cd/log.38776104._014908.job.log.tgz.1
[2024-05-18 05:08:51]  workdir=None
[2024-05-18 05:08:51] ]
[2024-05-18 05:08:51] 2024-05-18 12:08:23,653 | INFO     | transferring file log.38776104._014908.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6208378401/log.38776104._014908.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-05-18 05:08:51] 2024-05-18 12:08:23,653 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6208378401/log.38776104._014908.job.log.tgz.1 /home/boinc/slots/0/log.38776104._014908.job.log.t
[2024-05-18 05:08:51] 2024-05-18 12:08:23,681 | INFO     | adding to output.list: log.38776104._014908.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/20/cd/log.38776104._014908.job.log.tg
[2024-05-18 05:08:51] 2024-05-18 12:08:23,682 | INFO     | summary of transferred files:
[2024-05-18 05:08:51] 2024-05-18 12:08:23,682 | INFO     |  -- lfn=log.38776104._014908.job.log.tgz.1, status_code=0, status=transferred
[2024-05-18 05:08:51] 2024-05-18 12:08:23,682 | INFO     | stage-out finished correctly
[2024-05-18 05:08:51] 2024-05-18 12:08:26,292 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-18 05:08:51] 2024-05-18 12:08:27,339 | INFO     | job 6208378401 has state=finished
[2024-05-18 05:08:51] 2024-05-18 12:08:27,339 | INFO     | preparing for final server update for job 6208378401 in state='finished'
[2024-05-18 05:08:51] 2024-05-18 12:08:27,340 | INFO     | this job has now completed (state=finished)
[2024-05-18 05:08:51] 2024-05-18 12:08:27,340 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-18 05:08:51] 2024-05-18 12:08:27,340 | INFO     | job 6208378401 has finished - writing final server update
[2024-05-18 05:08:51] 2024-05-18 12:08:27,341 | INFO     | total number of processed events: 400 (read)
[2024-05-18 05:08:51] 2024-05-18 12:08:27,348 | INFO     | executing command: lscpu
[2024-05-18 05:08:51] 2024-05-18 12:08:27,410 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-18 05:08:51] 2024-05-18 12:08:27,411 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-18 05:08:51] 2024-05-18 12:08:27,473 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-18 05:08:51] 2024-05-18 12:08:30,936 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-18 05:08:51] 2024-05-18 12:08:30,940 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6208378401/memory_monitor_summary.json (trf name=prmon)
[2024-05-18 05:08:51] 2024-05-18 12:08:30,943 | INFO     | extracted standard info from prmon json
[2024-05-18 05:08:51] 2024-05-18 12:08:30,943 | INFO     | extracted standard memory fields from prmon json
[2024-05-18 05:08:51] 2024-05-18 12:08:30,943 | WARNING  | GPU info not found in prmon json
[2024-05-18 05:08:51] 2024-05-18 12:08:30,944 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-18 05:08:51] 2024-05-18 12:08:30,945 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-18 05:08:51] 2024-05-18 12:08:30,947 | INFO     | fitting pss+swap vs Time
[2024-05-18 05:08:51] 2024-05-18 12:08:30,948 | INFO     | model: linear, x: [1716031178.0, 1716031239.0, 1716031300.0, 1716031361.0, 1716031422.0, 1716031483.0, 1716031544.0, 1716031605.0, 1716031666.0, 1716031727.0, 1716
[2024-05-18 05:08:51] 2024-05-18 12:08:30,948 | INFO     | sum of square deviations: 30168007.5
[2024-05-18 05:08:51] 2024-05-18 12:08:30,948 | INFO     | sum of deviations: 17550159086.0
[2024-05-18 05:08:51] 2024-05-18 12:08:30,948 | INFO     | mean x: 1716032550.5
[2024-05-18 05:08:51] 2024-05-18 12:08:30,948 | INFO     | mean y: 2513473.2608695654
[2024-05-18 05:08:51] 2024-05-18 12:08:30,949 | INFO     | -- intersect: -998294913296.7812
[2024-05-18 05:08:51] 2024-05-18 12:08:30,949 | INFO     | intersect: -998294913296.7812
[2024-05-18 05:08:51] 2024-05-18 12:08:30,949 | INFO     | chi2: 2.324624788454892
[2024-05-18 05:08:51] 2024-05-18 12:08:30,949 | INFO     | -- intersect: -998294913296.7812
[2024-05-18 05:08:51] 2024-05-18 12:08:30,949 | INFO     | current memory leak: 581.75 B/s (using 46 data points, chi2=2.32)
[2024-05-18 05:08:51] 2024-05-18 12:08:30,950 | INFO     | ..............................
[2024-05-18 05:08:51] 2024-05-18 12:08:30,950 | INFO     | . Timing measurements:
[2024-05-18 05:08:51] 2024-05-18 12:08:30,950 | INFO     | . get job = 0 s
[2024-05-18 05:08:51] 2024-05-18 12:08:30,950 | INFO     | . initial setup = 1 s
[2024-05-18 05:08:51] 2024-05-18 12:08:30,950 | INFO     | . payload setup = 5 s
[2024-05-18 05:08:51] 2024-05-18 12:08:30,951 | INFO     | . stage-in = 0 s
[2024-05-18 05:08:51] 2024-05-18 12:08:30,951 | INFO     | . payload execution = 3229 s
[2024-05-18 05:08:51] 2024-05-18 12:08:30,951 | INFO     | . stage-out = 0 s
[2024-05-18 05:08:51] 2024-05-18 12:08:30,951 | INFO     | . log creation = 0 s
[2024-05-18 05:08:51] 2024-05-18 12:08:30,951 | INFO     | ..............................
[2024-05-18 05:08:51] 2024-05-18 12:08:31,043 | INFO     | 
[2024-05-18 05:08:51] 2024-05-18 12:08:31,043 | INFO     | job summary report
[2024-05-18 05:08:51] 2024-05-18 12:08:31,043 | INFO     | --------------------------------------------------
[2024-05-18 05:08:51] 2024-05-18 12:08:31,043 | INFO     | PanDA job id: 6208378401
[2024-05-18 05:08:51] 2024-05-18 12:08:31,043 | INFO     | task id: 38776104
[2024-05-18 05:08:51] 2024-05-18 12:08:31,044 | INFO     | errors: (none)
[2024-05-18 05:08:51] 2024-05-18 12:08:31,044 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-18 05:08:51] 2024-05-18 12:08:31,044 | INFO     | pilot state: finished 
[2024-05-18 05:08:51] 2024-05-18 12:08:31,044 | INFO     | transexitcode: 0
[2024-05-18 05:08:51] 2024-05-18 12:08:31,044 | INFO     | exeerrorcode: 0
[2024-05-18 05:08:51] 2024-05-18 12:08:31,044 | INFO     | exeerrordiag: 
[2024-05-18 05:08:51] 2024-05-18 12:08:31,044 | INFO     | exitcode: 0
[2024-05-18 05:08:51] 2024-05-18 12:08:31,044 | INFO     | exitmsg: OK
[2024-05-18 05:08:51] 2024-05-18 12:08:31,044 | INFO     | cpuconsumptiontime: 27764 s
[2024-05-18 05:08:51] 2024-05-18 12:08:31,044 | INFO     | nevents: 400
[2024-05-18 05:08:51] 2024-05-18 12:08:31,044 | INFO     | neventsw: 0
[2024-05-18 05:08:51] 2024-05-18 12:08:31,044 | INFO     | pid: 244274
[2024-05-18 05:08:51] 2024-05-18 12:08:31,044 | INFO     | pgrp: 244274
[2024-05-18 05:08:51] 2024-05-18 12:08:31,044 | INFO     | corecount: 12
[2024-05-18 05:08:51] 2024-05-18 12:08:31,044 | INFO     | event service: False
[2024-05-18 05:08:51] 2024-05-18 12:08:31,044 | INFO     | sizes: {0: 2392204, 4: 2392410, 11: 2392438, 3239: 2417966, 3240: 2426920, 3243: 2426976, 3248: 2427274}
[2024-05-18 05:08:51] 2024-05-18 12:08:31,044 | INFO     | --------------------------------------------------
[2024-05-18 05:08:51] 2024-05-18 12:08:31,044 | INFO     | 
[2024-05-18 05:08:51] 2024-05-18 12:08:31,044 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-18 05:08:51] 2024-05-18 12:08:31,076 | WARNING  | process 244274 is no longer using CPU - aborting
[2024-05-18 05:08:51] 2024-05-18 12:08:31,080 | INFO     | aborting job monitoring since job object (job id=6208378401) has expired
[2024-05-18 05:08:51] 2024-05-18 12:08:31,094 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-18 05:08:51] 2024-05-18 12:08:31,095 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-18 05:08:51] 2024-05-18 12:08:31,095 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-18 05:08:51] 2024-05-18 12:08:31,095 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-18 05:08:51] 2024-05-18 12:08:31,095 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-18 05:08:51] 2024-05-18 12:08:31,095 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-18 05:08:51] 2024-05-18 12:08:31,095 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-18 05:08:51] 2024-05-18 12:08:31,095 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-18 05:08:51] 2024-05-18 12:08:31,095 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-18 05:08:51] 2024-05-18 12:08:31,095 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-18 05:08:51] 2024-05-18 12:08:31,095 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-18 05:08:51] 2024-05-18 12:08:31,095 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-18 05:08:51] 2024-05-18 12:08:31,095 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-18 05:08:51] 2024-05-18 12:08:31,095 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-18 05:08:51] 2024-05-18 12:08:31,095 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-18 05:08:51] 2024-05-18 12:08:31,095 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-18 05:08:51] 2024-05-18 12:08:31,095 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-18 05:08:51] 2024-05-18 12:08:31,095 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-18 05:08:51] 2024-05-18 12:08:31,095 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-18 05:08:51] 2024-05-18 12:08:31,095 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-18 05:08:51] 2024-05-18 12:08:31,096 | INFO     | job 6208378401 has completed (purged errors)
[2024-05-18 05:08:51] 2024-05-18 12:08:31,096 | INFO     | overall cleanup function is called
[2024-05-18 05:08:51] 2024-05-18 12:08:32,103 | INFO     | --- collectZombieJob: --- 10, [244274]
[2024-05-18 05:08:51] 2024-05-18 12:08:32,103 | INFO     | zombie collector waiting for pid 244274
[2024-05-18 05:08:51] 2024-05-18 12:08:32,103 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-18 05:08:51] 2024-05-18 12:08:33,108 | INFO     | collected zombie processes
[2024-05-18 05:08:51] 2024-05-18 12:08:33,109 | INFO     | will now attempt to kill all subprocesses of pid=244274
[2024-05-18 05:08:51] 2024-05-18 12:08:33,298 | INFO     | process IDs to be killed: [244274] (in reverse order)
[2024-05-18 05:08:51] 2024-05-18 12:08:33,394 | WARNING  | found no corresponding commands to process id(s)
[2024-05-18 05:08:51] 2024-05-18 12:08:33,395 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-18 05:08:51] 2024-05-18 12:08:33,401 | INFO     | did not find any defunct processes belonging to 244274
[2024-05-18 05:08:51] 2024-05-18 12:08:33,406 | INFO     | did not find any defunct processes belonging to 244274
[2024-05-18 05:08:51] 2024-05-18 12:08:33,406 | INFO     | ready for new job
[2024-05-18 05:08:51] 2024-05-18 12:08:33,406 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-18 05:08:51] 2024-05-18 12:08:33,407 | INFO     | *************************************
[2024-05-18 05:08:51] 2024-05-18 12:08:33,407 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-18 05:08:51] 2024-05-18 12:08:33,408 | INFO     | *************************************
[2024-05-18 05:08:51] 2024-05-18 12:08:33,408 | INFO     | 
[2024-05-18 05:08:51] 2024-05-18 12:08:33,410 | INFO     | architecture information:
[2024-05-18 05:08:51] 2024-05-18 12:08:33,410 | INFO     | executing command: cat /etc/os-release
[2024-05-18 05:08:51] 2024-05-18 12:08:33,425 | INFO     | cat /etc/os-release:
[2024-05-18 05:08:51] NAME="CentOS Linux"
[2024-05-18 05:08:51] VERSION="7 (Core)"
[2024-05-18 05:08:51] ID="centos"
[2024-05-18 05:08:51] ID_LIKE="rhel fedora"
[2024-05-18 05:08:51] VERSION_ID="7"
[2024-05-18 05:08:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-18 05:08:51] ANSI_COLOR="0;31"
[2024-05-18 05:08:51] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-18 05:08:51] HOME_URL="https://www.centos.org/"
[2024-05-18 05:08:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-18 05:08:51] 
[2024-05-18 05:08:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-18 05:08:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-18 05:08:51] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-18 05:08:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-18 05:08:51] 
[2024-05-18 05:08:51] 2024-05-18 12:08:33,425 | INFO     | *************************************
[2024-05-18 05:08:51] 2024-05-18 12:08:33,928 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-18 05:08:51] 2024-05-18 12:08:33,949 | INFO     | sufficient remaining disk space (2111547899904 B)
[2024-05-18 05:08:51] 2024-05-18 12:08:33,949 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-18 05:08:51] 2024-05-18 12:08:33,950 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-18 05:08:51] 2024-05-18 12:08:33,950 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-18 05:08:51] 2024-05-18 12:08:33,951 | INFO     | found 0 job(s) in 20 queues
[2024-05-18 05:08:51] 2024-05-18 12:08:33,951 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-18 05:08:51] 2024-05-18 12:08:33,951 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-18 05:08:51] 2024-05-18 12:08:34,017 | INFO     | all data control threads have been joined
[2024-05-18 05:08:51] 2024-05-18 12:08:34,246 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-18 05:08:51] 2024-05-18 12:08:34,588 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-18 05:08:51] 2024-05-18 12:08:34,588 | INFO     | aborting loop
[2024-05-18 05:08:51] 2024-05-18 12:08:34,809 | INFO     | all job control threads have been joined
[2024-05-18 05:08:51] 2024-05-18 12:08:34,955 | INFO     | [job] retrieve thread has finished
[2024-05-18 05:08:51] 2024-05-18 12:08:35,022 | INFO     | [data] control thread has finished
[2024-05-18 05:08:51] 2024-05-18 12:08:35,093 | INFO     | [job] create_data_payload thread has finished
[2024-05-18 05:08:51] 2024-05-18 12:08:35,110 | INFO     | all payload control threads have been joined
[2024-05-18 05:08:51] 2024-05-18 12:08:35,122 | INFO     | [payload] validate_pre thread has finished
[2024-05-18 05:08:51] 2024-05-18 12:08:35,165 | INFO     | [payload] execute_payloads thread has finished
[2024-05-18 05:08:51] 2024-05-18 12:08:35,594 | INFO     | [job] job monitor thread has finished
[2024-05-18 05:08:51] 2024-05-18 12:08:35,814 | INFO     | [job] control thread has finished
[2024-05-18 05:08:51] 2024-05-18 12:08:36,039 | INFO     | [payload] failed_post thread has finished
[2024-05-18 05:08:51] 2024-05-18 12:08:36,042 | INFO     | [payload] validate_post thread has finished
[2024-05-18 05:08:51] 2024-05-18 12:08:36,054 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-18 05:08:51] 2024-05-18 12:08:36,115 | INFO     | [payload] control thread has finished
[2024-05-18 05:08:51] 2024-05-18 12:08:36,251 | INFO     | [data] copytool_out thread has finished
[2024-05-18 05:08:51] 2024-05-18 12:08:36,297 | INFO     | [job] validate thread has finished
[2024-05-18 05:08:51] 2024-05-18 12:08:36,339 | INFO     | [data] copytool_in thread has finished
[2024-05-18 05:08:51] 2024-05-18 12:08:36,894 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-18 05:08:51] 2024-05-18 12:08:37,060 | INFO     | [job] queue monitor thread has finished
[2024-05-18 05:08:51] 2024-05-18 12:08:40,900 | INFO     | [data] queue_monitor thread has finished
[2024-05-18 05:08:51] 2024-05-18 12:08:44,280 | INFO     | job.realtimelogging is not enabled
[2024-05-18 05:08:51] 2024-05-18 12:08:45,285 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-18 05:08:51] 2024-05-18 12:08:45,662 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140278555965248)>', '<ExcThread(monitor, started 140278343243520)>']
[2024-05-18 05:08:51] 2024-05-18 12:08:46,006 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-18 05:08:51] 2024-05-18 12:08:46,006 | INFO     | [monitor] control thread has ended
[2024-05-18 05:08:51] 2024-05-18 12:08:50,687 | INFO     | all workflow threads have been joined
[2024-05-18 05:08:51] 2024-05-18 12:08:50,687 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-18 05:08:51] 2024-05-18 12:08:50,687 | INFO     | traces error code: 0
[2024-05-18 05:08:51] 2024-05-18 12:08:50,688 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-18 05:08:51] 2024-05-18 12:08:50,797 [wrapper] ==== pilot stdout END ====
[2024-05-18 05:08:51] 2024-05-18 12:08:50,800 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-18 05:08:51] 2024-05-18 12:08:50,803 [wrapper] pilotpid: 235793
[2024-05-18 05:08:51] 2024-05-18 12:08:50,807 [wrapper] Pilot exit status: 0
[2024-05-18 05:08:51] 2024-05-18 12:08:50,819 [wrapper] pandaids: 6208378401
[2024-05-18 05:08:51] 2024-05-18 12:08:50,919 [wrapper] cleanup: SIGTERM to supervisor_pilot 164965 235794
[2024-05-18 05:08:51] 2024-05-18 12:08:50,923 [wrapper] Test setup, not cleaning
[2024-05-18 05:08:51] 2024-05-18 12:08:50,927 [wrapper] ==== wrapper stdout END ====
[2024-05-18 05:08:51] 2024-05-18 12:08:50,931 [wrapper] ==== wrapper stderr END ====
[2024-05-18 05:08:51] 2024-05-18 12:08:50,938 [wrapper] apfmon messages muted
[2024-05-18 05:08:51]  *** Error codes and diagnostics ***
[2024-05-18 05:08:51]     "exeErrorCode": 0,
[2024-05-18 05:08:51]     "exeErrorDiag": "",
[2024-05-18 05:08:51]     "pilotErrorCode": 0,
[2024-05-18 05:08:51]     "pilotErrorDiag": "",
[2024-05-18 05:08:51]  *** Listing of results directory ***
[2024-05-18 05:08:51] total 824364
[2024-05-18 05:08:51] -rw-r--r-- 1 boinc boinc    467845 May 17 17:56 pilot3.tar.gz
[2024-05-18 05:08:51] -rwx------ 1 boinc boinc     32251 May 17 18:20 runpilot2-wrapper.sh
[2024-05-18 05:08:51] -rw-r--r-- 1 boinc boinc      5633 May 17 18:20 queuedata.json
[2024-05-18 05:08:51] -rw-r--r-- 1 boinc boinc       100 May 18 04:13 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-18 05:08:51] -rwxr-xr-x 1 boinc boinc      7986 May 18 04:13 run_atlas
[2024-05-18 05:08:51] -rw-r--r-- 1 boinc boinc       105 May 18 04:13 job.xml
[2024-05-18 05:08:51] -rw-r--r-- 1 boinc boinc      6626 May 18 04:13 init_data.xml
[2024-05-18 05:08:51] -rw-r--r-- 2 boinc boinc 602114511 May 18 04:13 EVNT.38776100._000509.pool.root.1
[2024-05-18 05:08:51] -rw-r--r-- 2 boinc boinc     17537 May 18 04:13 start_atlas.sh
[2024-05-18 05:08:51] drwxrwx--x 2 boinc boinc      4096 May 18 04:13 shared
[2024-05-18 05:08:51] -rw-r--r-- 2 boinc boinc    480000 May 18 04:13 input.tar.gz
[2024-05-18 05:08:51] -rw-r--r-- 1 boinc boinc         0 May 18 04:13 boinc_lockfile
[2024-05-18 05:08:51] -rw-r--r-- 1 boinc boinc      2644 May 18 04:13 pandaJob.out
[2024-05-18 05:08:51] -rw------- 1 boinc boinc       424 May 18 04:13 setup.sh.local
[2024-05-18 05:08:51] -rw------- 1 boinc boinc   1019073 May 18 04:14 agis_schedconf.cvmfs.json
[2024-05-18 05:08:51] -rw------- 1 boinc boinc         0 May 18 04:14 agis_ddmendpoints.agis.ALL.json
[2024-05-18 05:08:51] -rw------- 1 boinc boinc   1324701 May 18 04:14 cric_ddmendpoints.json
[2024-05-18 05:08:51] drwx------ 4 boinc boinc      4096 May 18 04:14 pilot3
[2024-05-18 05:08:51] -rw------- 1 boinc boinc 237129667 May 18 05:07 HITS.38776104._014908.pool.root.1
[2024-05-18 05:08:51] -rw-r--r-- 1 boinc boinc       530 May 18 05:08 boinc_task_state.xml
[2024-05-18 05:08:51] -rw------- 1 boinc boinc        95 May 18 05:08 pilot_heartbeat.json
[2024-05-18 05:08:51] -rw------- 1 boinc boinc      1058 May 18 05:08 memory_monitor_summary.json
[2024-05-18 05:08:51] -rw------- 1 boinc boinc    346552 May 18 05:08 log.38776104._014908.job.log.tgz.1
[2024-05-18 05:08:51] -rw------- 1 boinc boinc      7772 May 18 05:08 heartbeat.json
[2024-05-18 05:08:51] -rw-r--r-- 1 boinc boinc        27 May 18 05:08 wrapper_checkpoint.txt
[2024-05-18 05:08:51] -rw-r--r-- 1 boinc boinc      8192 May 18 05:08 boinc_mmap_file
[2024-05-18 05:08:51] -rw------- 1 boinc boinc      4405 May 18 05:08 pilotlog.txt
[2024-05-18 05:08:51] -rw------- 1 boinc boinc    337084 May 18 05:08 log.38776104._014908.job.log.1
[2024-05-18 05:08:51] -rw------- 1 boinc boinc       357 May 18 05:08 output.list
[2024-05-18 05:08:51] -rw-r--r-- 1 boinc boinc       620 May 18 05:08 runtime_log
[2024-05-18 05:08:51] -rw------- 1 boinc boinc    706560 May 18 05:08 result.tar.gz
[2024-05-18 05:08:51] -rw-r--r-- 1 boinc boinc     11286 May 18 05:08 runtime_log.err
[2024-05-18 05:08:51] -rw------- 1 boinc boinc       651 May 18 05:08 LykMDm0vNS5n9Rq4apoT9bVoABFKDmABFKDmlqFKDmncLKDm3uIVtm.diag
[2024-05-18 05:08:51] -rw-r--r-- 1 boinc boinc     21346 May 18 05:08 stderr.txt
[2024-05-18 05:08:51] HITS file was successfully produced:
[2024-05-18 05:08:51] -rw------- 1 boinc boinc 237129667 May 18 05:07 shared/HITS.pool.root.1
[2024-05-18 05:08:51]  *** Contents of shared directory: ***
[2024-05-18 05:08:51] total 820768
[2024-05-18 05:08:51] -rw-r--r-- 2 boinc boinc 602114511 May 18 04:13 ATLAS.root_0
[2024-05-18 05:08:51] -rw-r--r-- 2 boinc boinc     17537 May 18 04:13 start_atlas.sh
[2024-05-18 05:08:51] -rw-r--r-- 2 boinc boinc    480000 May 18 04:13 input.tar.gz
[2024-05-18 05:08:51] -rw------- 1 boinc boinc 237129667 May 18 05:07 HITS.pool.root.1
[2024-05-18 05:08:51] -rw------- 1 boinc boinc    706560 May 18 05:08 result.tar.gz
05:08:53 (231600): run_atlas exited; CPU time 27635.482076
05:08:53 (231600): called boinc_finish(0)

</stderr_txt>
]]>

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