Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:47:46 (196703): wrapper (7.7.26015): starting
06:47:46 (196703): wrapper: running run_atlas (--nthreads 12)
[2024-05-18 06:47:46] Arguments: --nthreads 12
[2024-05-18 06:47:46] Threads: 12
[2024-05-18 06:47:46] Checking for CVMFS
[2024-05-18 06:47:46] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-18 06:47:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-18 06:47:46] Running cvmfs_config stat atlas.cern.ch
[2024-05-18 06:47:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-18 06:47:46] 2.11.2.0 10456 52927 167100 132880 3 196 41617131 45568001 12411 130560 0 280021312 99.812 151859182 15897 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2024-05-18 06:47:46] CVMFS is ok
[2024-05-18 06:47:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-18 06:47:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-18 06:47:46] Further information can be found at the LHC@home message board.
[2024-05-18 06:47:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-18 06:47:46] Checking for apptainer binary...
[2024-05-18 06:47:46] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-18 06:47:46] Running /usr/bin/apptainer --version
[2024-05-18 06:47:46] apptainer version 1.2.4-1.el7
[2024-05-18 06:47:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-18 06:47:47] WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0108.triumf.lcg
[2024-05-18 06:47:47] apptainer works
[2024-05-18 06:47:47] Set ATHENA_PROC_NUMBER=12
[2024-05-18 06:47:47] Set ATHENA_CORE_NUMBER=12
[2024-05-18 06:47:47] Starting ATLAS job with PandaID=6208378209
[2024-05-18 06:47:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-18 07:55:59]  *** The last 200 lines of the pilot log: ***
[2024-05-18 07:55:59]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-18 07:55:59]  is_tar=False
[2024-05-18 07:55:59]  lfn=log.38776104._014768.job.log.tgz.1
[2024-05-18 07:55:59]  mtime=0
[2024-05-18 07:55:59]  protocol_id=None
[2024-05-18 07:55:59]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-18 07:55:59]  replicas=None
[2024-05-18 07:55:59]  scope=mc23_13p6TeV
[2024-05-18 07:55:59]  status=None
[2024-05-18 07:55:59]  status_code=0
[2024-05-18 07:55:59]  storage_token=
[2024-05-18 07:55:59]  surl=/home/boinc/slots/0/PanDA_Pilot-6208378209/log.38776104._014768.job.log.tgz.1
[2024-05-18 07:55:59]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/64/45/log.38776104._014768.job.log.tgz.1
[2024-05-18 07:55:59]  workdir=None
[2024-05-18 07:55:59] ]
[2024-05-18 07:55:59] 2024-05-18 14:55:28,279 | INFO     | transferring file log.38776104._014768.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6208378209/log.38776104._014768.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-05-18 07:55:59] 2024-05-18 14:55:28,279 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6208378209/log.38776104._014768.job.log.tgz.1 /home/boinc/slots/0/log.38776104._014768.job.log.t
[2024-05-18 07:55:59] 2024-05-18 14:55:28,304 | INFO     | adding to output.list: log.38776104._014768.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/64/45/log.38776104._014768.job.log.tg
[2024-05-18 07:55:59] 2024-05-18 14:55:28,305 | INFO     | summary of transferred files:
[2024-05-18 07:55:59] 2024-05-18 14:55:28,305 | INFO     |  -- lfn=log.38776104._014768.job.log.tgz.1, status_code=0, status=transferred
[2024-05-18 07:55:59] 2024-05-18 14:55:28,305 | INFO     | stage-out finished correctly
[2024-05-18 07:55:59] 2024-05-18 14:55:30,139 | INFO     | monitor loop #310: job 0:6208378209 is in state 'finished'
[2024-05-18 07:55:59] 2024-05-18 14:55:30,140 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 07:55:59] 2024-05-18 14:55:31,513 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-18 07:55:59] 2024-05-18 14:55:32,174 | INFO     | job 6208378209 has state=finished
[2024-05-18 07:55:59] 2024-05-18 14:55:32,174 | INFO     | preparing for final server update for job 6208378209 in state='finished'
[2024-05-18 07:55:59] 2024-05-18 14:55:32,175 | INFO     | this job has now completed (state=finished)
[2024-05-18 07:55:59] 2024-05-18 14:55:32,175 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-18 07:55:59] 2024-05-18 14:55:32,175 | INFO     | job 6208378209 has finished - writing final server update
[2024-05-18 07:55:59] 2024-05-18 14:55:32,175 | INFO     | total number of processed events: 400 (read)
[2024-05-18 07:55:59] 2024-05-18 14:55:32,180 | INFO     | executing command: lscpu
[2024-05-18 07:55:59] 2024-05-18 14:55:32,237 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-18 07:55:59] 2024-05-18 14:55:32,237 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-18 07:55:59] 2024-05-18 14:55:32,283 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-18 07:55:59] 2024-05-18 14:55:32,643 | INFO     | monitor loop #311: job 0:6208378209 is in state 'finished'
[2024-05-18 07:55:59] 2024-05-18 14:55:32,643 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 07:55:59] 2024-05-18 14:55:35,146 | INFO     | monitor loop #312: job 0:6208378209 is in state 'finished'
[2024-05-18 07:55:59] 2024-05-18 14:55:35,146 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 07:55:59] 2024-05-18 14:55:36,845 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-18 07:55:59] 2024-05-18 14:55:36,845 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6208378209/memory_monitor_summary.json (trf name=prmon)
[2024-05-18 07:55:59] 2024-05-18 14:55:36,846 | INFO     | extracted standard info from prmon json
[2024-05-18 07:55:59] 2024-05-18 14:55:36,846 | INFO     | extracted standard memory fields from prmon json
[2024-05-18 07:55:59] 2024-05-18 14:55:36,846 | WARNING  | GPU info not found in prmon json
[2024-05-18 07:55:59] 2024-05-18 14:55:36,846 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-18 07:55:59] 2024-05-18 14:55:36,846 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-18 07:55:59] 2024-05-18 14:55:36,848 | INFO     | fitting pss+swap vs Time
[2024-05-18 07:55:59] 2024-05-18 14:55:36,848 | INFO     | model: linear, x: [1716040413.0, 1716040474.0, 1716040535.0, 1716040596.0, 1716040657.0, 1716040718.0, 1716040779.0, 1716040840.0, 1716040901.0, 1716040962.0, 1716
[2024-05-18 07:55:59] 2024-05-18 14:55:36,848 | INFO     | sum of square deviations: 63664236.98305084
[2024-05-18 07:55:59] 2024-05-18 14:55:36,848 | INFO     | sum of deviations: 18460791562.322033
[2024-05-18 07:55:59] 2024-05-18 14:55:36,848 | INFO     | mean x: 1716042182.0169492
[2024-05-18 07:55:59] 2024-05-18 14:55:36,848 | INFO     | mean y: 2539892.6779661016
[2024-05-18 07:55:59] 2024-05-18 14:55:36,848 | INFO     | -- intersect: -497600172958.5125
[2024-05-18 07:55:59] 2024-05-18 14:55:36,849 | INFO     | intersect: -497600172958.5125
[2024-05-18 07:55:59] 2024-05-18 14:55:36,849 | INFO     | chi2: 1.9100296390095703
[2024-05-18 07:55:59] 2024-05-18 14:55:36,849 | INFO     | -- intersect: -497600172958.5125
[2024-05-18 07:55:59] 2024-05-18 14:55:36,849 | INFO     | current memory leak: 289.97 B/s (using 59 data points, chi2=1.91)
[2024-05-18 07:55:59] 2024-05-18 14:55:36,849 | INFO     | ..............................
[2024-05-18 07:55:59] 2024-05-18 14:55:36,849 | INFO     | . Timing measurements:
[2024-05-18 07:55:59] 2024-05-18 14:55:36,849 | INFO     | . get job = 0 s
[2024-05-18 07:55:59] 2024-05-18 14:55:36,849 | INFO     | . initial setup = 2 s
[2024-05-18 07:55:59] 2024-05-18 14:55:36,849 | INFO     | . payload setup = 6 s
[2024-05-18 07:55:59] 2024-05-18 14:55:36,849 | INFO     | . stage-in = 0 s
[2024-05-18 07:55:59] 2024-05-18 14:55:36,849 | INFO     | . payload execution = 4021 s
[2024-05-18 07:55:59] 2024-05-18 14:55:36,850 | INFO     | . stage-out = 0 s
[2024-05-18 07:55:59] 2024-05-18 14:55:36,850 | INFO     | . log creation = 0 s
[2024-05-18 07:55:59] 2024-05-18 14:55:36,850 | INFO     | ..............................
[2024-05-18 07:55:59] 2024-05-18 14:55:37,190 | INFO     | 
[2024-05-18 07:55:59] 2024-05-18 14:55:37,190 | INFO     | job summary report
[2024-05-18 07:55:59] 2024-05-18 14:55:37,190 | INFO     | --------------------------------------------------
[2024-05-18 07:55:59] 2024-05-18 14:55:37,190 | INFO     | PanDA job id: 6208378209
[2024-05-18 07:55:59] 2024-05-18 14:55:37,190 | INFO     | task id: 38776104
[2024-05-18 07:55:59] 2024-05-18 14:55:37,190 | INFO     | errors: (none)
[2024-05-18 07:55:59] 2024-05-18 14:55:37,190 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-18 07:55:59] 2024-05-18 14:55:37,190 | INFO     | pilot state: finished 
[2024-05-18 07:55:59] 2024-05-18 14:55:37,190 | INFO     | transexitcode: 0
[2024-05-18 07:55:59] 2024-05-18 14:55:37,190 | INFO     | exeerrorcode: 0
[2024-05-18 07:55:59] 2024-05-18 14:55:37,191 | INFO     | exeerrordiag: 
[2024-05-18 07:55:59] 2024-05-18 14:55:37,191 | INFO     | exitcode: 0
[2024-05-18 07:55:59] 2024-05-18 14:55:37,191 | INFO     | exitmsg: OK
[2024-05-18 07:55:59] 2024-05-18 14:55:37,191 | INFO     | cpuconsumptiontime: 35488 s
[2024-05-18 07:55:59] 2024-05-18 14:55:37,191 | INFO     | nevents: 400
[2024-05-18 07:55:59] 2024-05-18 14:55:37,191 | INFO     | neventsw: 0
[2024-05-18 07:55:59] 2024-05-18 14:55:37,191 | INFO     | pid: 207375
[2024-05-18 07:55:59] 2024-05-18 14:55:37,191 | INFO     | pgrp: 207375
[2024-05-18 07:55:59] 2024-05-18 14:55:37,191 | INFO     | corecount: 12
[2024-05-18 07:55:59] 2024-05-18 14:55:37,191 | INFO     | event service: False
[2024-05-18 07:55:59] 2024-05-18 14:55:37,191 | INFO     | sizes: {0: 2391983, 1: 2392182, 6: 2392388, 11: 2392416, 4031: 2418052, 4033: 2427006, 4036: 2427190, 4041: 2427360}
[2024-05-18 07:55:59] 2024-05-18 14:55:37,191 | INFO     | --------------------------------------------------
[2024-05-18 07:55:59] 2024-05-18 14:55:37,191 | INFO     | 
[2024-05-18 07:55:59] 2024-05-18 14:55:37,192 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-18 07:55:59] 2024-05-18 14:55:37,221 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-18 07:55:59] 2024-05-18 14:55:37,221 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-18 07:55:59] 2024-05-18 14:55:37,221 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-18 07:55:59] 2024-05-18 14:55:37,221 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-18 07:55:59] 2024-05-18 14:55:37,221 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-18 07:55:59] 2024-05-18 14:55:37,221 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-18 07:55:59] 2024-05-18 14:55:37,222 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-18 07:55:59] 2024-05-18 14:55:37,222 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-18 07:55:59] 2024-05-18 14:55:37,222 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-18 07:55:59] 2024-05-18 14:55:37,222 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-18 07:55:59] 2024-05-18 14:55:37,222 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-18 07:55:59] 2024-05-18 14:55:37,222 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-18 07:55:59] 2024-05-18 14:55:37,222 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-18 07:55:59] 2024-05-18 14:55:37,222 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-18 07:55:59] 2024-05-18 14:55:37,222 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-18 07:55:59] 2024-05-18 14:55:37,222 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-18 07:55:59] 2024-05-18 14:55:37,222 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-18 07:55:59] 2024-05-18 14:55:37,222 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-18 07:55:59] 2024-05-18 14:55:37,222 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-18 07:55:59] 2024-05-18 14:55:37,222 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-18 07:55:59] 2024-05-18 14:55:37,223 | INFO     | job 6208378209 has completed (purged errors)
[2024-05-18 07:55:59] 2024-05-18 14:55:37,223 | INFO     | overall cleanup function is called
[2024-05-18 07:55:59] 2024-05-18 14:55:38,230 | INFO     | --- collectZombieJob: --- 10, [207375]
[2024-05-18 07:55:59] 2024-05-18 14:55:38,230 | INFO     | zombie collector waiting for pid 207375
[2024-05-18 07:55:59] 2024-05-18 14:55:38,230 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-18 07:55:59] 2024-05-18 14:55:39,236 | INFO     | collected zombie processes
[2024-05-18 07:55:59] 2024-05-18 14:55:39,236 | INFO     | will now attempt to kill all subprocesses of pid=207375
[2024-05-18 07:55:59] 2024-05-18 14:55:39,442 | INFO     | process IDs to be killed: [207375] (in reverse order)
[2024-05-18 07:55:59] 2024-05-18 14:55:39,548 | WARNING  | found no corresponding commands to process id(s)
[2024-05-18 07:55:59] 2024-05-18 14:55:39,548 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-18 07:55:59] 2024-05-18 14:55:39,558 | INFO     | did not find any defunct processes belonging to 207375
[2024-05-18 07:55:59] 2024-05-18 14:55:39,566 | INFO     | did not find any defunct processes belonging to 207375
[2024-05-18 07:55:59] 2024-05-18 14:55:39,566 | INFO     | ready for new job
[2024-05-18 07:55:59] 2024-05-18 14:55:39,567 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-18 07:55:59] 2024-05-18 14:55:39,568 | INFO     | *************************************
[2024-05-18 07:55:59] 2024-05-18 14:55:39,568 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-18 07:55:59] 2024-05-18 14:55:39,568 | INFO     | *************************************
[2024-05-18 07:55:59] 2024-05-18 14:55:39,569 | INFO     | 
[2024-05-18 07:55:59] 2024-05-18 14:55:39,572 | INFO     | architecture information:
[2024-05-18 07:55:59] 2024-05-18 14:55:39,572 | INFO     | executing command: cat /etc/os-release
[2024-05-18 07:55:59] 2024-05-18 14:55:39,589 | INFO     | cat /etc/os-release:
[2024-05-18 07:55:59] NAME="CentOS Linux"
[2024-05-18 07:55:59] VERSION="7 (Core)"
[2024-05-18 07:55:59] ID="centos"
[2024-05-18 07:55:59] ID_LIKE="rhel fedora"
[2024-05-18 07:55:59] VERSION_ID="7"
[2024-05-18 07:55:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-18 07:55:59] ANSI_COLOR="0;31"
[2024-05-18 07:55:59] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-18 07:55:59] HOME_URL="https://www.centos.org/"
[2024-05-18 07:55:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-18 07:55:59] 
[2024-05-18 07:55:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-18 07:55:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-18 07:55:59] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-18 07:55:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-18 07:55:59] 
[2024-05-18 07:55:59] 2024-05-18 14:55:39,589 | INFO     | *************************************
[2024-05-18 07:55:59] 2024-05-18 14:55:40,092 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-18 07:55:59] 2024-05-18 14:55:40,117 | INFO     | sufficient remaining disk space (1373375561728 B)
[2024-05-18 07:55:59] 2024-05-18 14:55:40,117 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-18 07:55:59] 2024-05-18 14:55:40,118 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-18 07:55:59] 2024-05-18 14:55:40,118 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-18 07:55:59] 2024-05-18 14:55:40,119 | INFO     | found 0 job(s) in 20 queues
[2024-05-18 07:55:59] 2024-05-18 14:55:40,119 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-18 07:55:59] 2024-05-18 14:55:40,119 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-18 07:55:59] 2024-05-18 14:55:40,157 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2024-05-18 07:55:59] 2024-05-18 14:55:40,157 | WARNING  | cannot recover job monitoring - aborting pilot
[2024-05-18 07:55:59] 2024-05-18 14:55:40,158 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-18 07:55:59] 2024-05-18 14:55:40,158 | INFO     | will abort loop
[2024-05-18 07:55:59] 2024-05-18 14:55:40,324 | INFO     | all data control threads have been joined
[2024-05-18 07:55:59] 2024-05-18 14:55:40,822 | INFO     | all payload control threads have been joined
[2024-05-18 07:55:59] 2024-05-18 14:55:41,029 | INFO     | all job control threads have been joined
[2024-05-18 07:55:59] 2024-05-18 14:55:41,123 | INFO     | [job] retrieve thread has finished
[2024-05-18 07:55:59] 2024-05-18 14:55:41,163 | INFO     | [job] job monitor thread has finished
[2024-05-18 07:55:59] 2024-05-18 14:55:41,330 | INFO     | [data] control thread has finished
[2024-05-18 07:55:59] 2024-05-18 14:55:41,394 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-18 07:55:59] 2024-05-18 14:55:41,412 | INFO     | [payload] failed_post thread has finished
[2024-05-18 07:55:59] 2024-05-18 14:55:41,584 | INFO     | [job] create_data_payload thread has finished
[2024-05-18 07:55:59] 2024-05-18 14:55:41,690 | INFO     | [data] copytool_in thread has finished
[2024-05-18 07:55:59] 2024-05-18 14:55:41,828 | INFO     | [payload] control thread has finished
[2024-05-18 07:55:59] 2024-05-18 14:55:41,929 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-18 07:55:59] 2024-05-18 14:55:42,000 | INFO     | [payload] validate_post thread has finished
[2024-05-18 07:55:59] 2024-05-18 14:55:42,035 | INFO     | [job] control thread has finished
[2024-05-18 07:55:59] 2024-05-18 14:55:42,107 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-18 07:55:59] 2024-05-18 14:55:42,185 | INFO     | [job] validate thread has finished
[2024-05-18 07:55:59] 2024-05-18 14:55:42,281 | INFO     | [payload] validate_pre thread has finished
[2024-05-18 07:55:59] 2024-05-18 14:55:42,506 | INFO     | [payload] execute_payloads thread has finished
[2024-05-18 07:55:59] 2024-05-18 14:55:42,934 | INFO     | [job] queue monitor thread has finished
[2024-05-18 07:55:59] 2024-05-18 14:55:43,400 | INFO     | [data] copytool_out thread has finished
[2024-05-18 07:55:59] 2024-05-18 14:55:46,113 | INFO     | [data] queue_monitor thread has finished
[2024-05-18 07:55:59] 2024-05-18 14:55:51,042 | INFO     | job.realtimelogging is not enabled
[2024-05-18 07:55:59] 2024-05-18 14:55:52,046 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-18 07:55:59] 2024-05-18 14:55:52,976 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140519491364672)>', '<ExcThread(monitor, started 140519199971072)>']
[2024-05-18 07:55:59] 2024-05-18 14:55:53,177 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-18 07:55:59] 2024-05-18 14:55:53,177 | INFO     | [monitor] control thread has ended
[2024-05-18 07:55:59] 2024-05-18 14:55:57,987 | INFO     | all workflow threads have been joined
[2024-05-18 07:55:59] 2024-05-18 14:55:57,987 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-18 07:55:59] 2024-05-18 14:55:57,987 | INFO     | traces error code: 0
[2024-05-18 07:55:59] 2024-05-18 14:55:57,987 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-18 07:55:59] 2024-05-18 14:55:58,076 [wrapper] ==== pilot stdout END ====
[2024-05-18 07:55:59] 2024-05-18 14:55:58,080 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-18 07:55:59] 2024-05-18 14:55:58,084 [wrapper] pilotpid: 200900
[2024-05-18 07:55:59] 2024-05-18 14:55:58,088 [wrapper] Pilot exit status: 0
[2024-05-18 07:55:59] 2024-05-18 14:55:58,102 [wrapper] pandaids: 6208378209
[2024-05-18 07:55:59] 2024-05-18 14:55:58,200 [wrapper] cleanup: SIGTERM to supervisor_pilot 173110 200901
[2024-05-18 07:55:59] 2024-05-18 14:55:58,204 [wrapper] Test setup, not cleaning
[2024-05-18 07:55:59] 2024-05-18 14:55:58,207 [wrapper] ==== wrapper stdout END ====
[2024-05-18 07:55:59] 2024-05-18 14:55:58,211 [wrapper] ==== wrapper stderr END ====
[2024-05-18 07:55:59] 2024-05-18 14:55:58,217 [wrapper] apfmon messages muted
[2024-05-18 07:55:59]  *** Error codes and diagnostics ***
[2024-05-18 07:55:59]     "exeErrorCode": 0,
[2024-05-18 07:55:59]     "exeErrorDiag": "",
[2024-05-18 07:55:59]     "pilotErrorCode": 0,
[2024-05-18 07:55:59]     "pilotErrorDiag": "",
[2024-05-18 07:55:59]  *** Listing of results directory ***
[2024-05-18 07:55:59] total 822040
[2024-05-18 07:55:59] -rw-r--r-- 1 boinc boinc    467845 May 17 17:56 pilot3.tar.gz
[2024-05-18 07:55:59] -rw-r--r-- 1 boinc boinc      5633 May 17 18:04 queuedata.json
[2024-05-18 07:55:59] -rwx------ 1 boinc boinc     32251 May 17 18:04 runpilot2-wrapper.sh
[2024-05-18 07:55:59] -rw-r--r-- 1 boinc boinc       100 May 18 06:47 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-18 07:55:59] -rwxr-xr-x 1 boinc boinc      7986 May 18 06:47 run_atlas
[2024-05-18 07:55:59] -rw-r--r-- 1 boinc boinc       105 May 18 06:47 job.xml
[2024-05-18 07:55:59] -rw-r--r-- 1 boinc boinc      6608 May 18 06:47 init_data.xml
[2024-05-18 07:55:59] -rw-r--r-- 2 boinc boinc 600752576 May 18 06:47 EVNT.38776100._000503.pool.root.1
[2024-05-18 07:55:59] -rw-r--r-- 2 boinc boinc     17537 May 18 06:47 start_atlas.sh
[2024-05-18 07:55:59] drwxrwx--x 2 boinc boinc      4096 May 18 06:47 shared
[2024-05-18 07:55:59] -rw-r--r-- 2 boinc boinc    480005 May 18 06:47 input.tar.gz
[2024-05-18 07:55:59] -rw-r--r-- 1 boinc boinc         0 May 18 06:47 boinc_lockfile
[2024-05-18 07:55:59] -rw-r--r-- 1 boinc boinc      2644 May 18 06:47 pandaJob.out
[2024-05-18 07:55:59] -rw------- 1 boinc boinc       424 May 18 06:47 setup.sh.local
[2024-05-18 07:55:59] -rw------- 1 boinc boinc   1019434 May 18 06:47 agis_schedconf.cvmfs.json
[2024-05-18 07:55:59] -rw------- 1 boinc boinc         0 May 18 06:47 agis_ddmendpoints.agis.ALL.json
[2024-05-18 07:55:59] -rw------- 1 boinc boinc   1324701 May 18 06:47 cric_ddmendpoints.json
[2024-05-18 07:55:59] drwx------ 4 boinc boinc      4096 May 18 06:47 pilot3
[2024-05-18 07:55:59] -rw------- 1 boinc boinc 235943234 May 18 07:54 HITS.38776104._014768.pool.root.1
[2024-05-18 07:55:59] -rw-r--r-- 1 boinc boinc       530 May 18 07:54 boinc_task_state.xml
[2024-05-18 07:55:59] -rw------- 1 boinc boinc        95 May 18 07:55 pilot_heartbeat.json
[2024-05-18 07:55:59] -rw------- 1 boinc boinc      1054 May 18 07:55 memory_monitor_summary.json
[2024-05-18 07:55:59] -rw------- 1 boinc boinc    367024 May 18 07:55 log.38776104._014768.job.log.tgz.1
[2024-05-18 07:55:59] -rw-r--r-- 1 boinc boinc      8192 May 18 07:55 boinc_mmap_file
[2024-05-18 07:55:59] -rw-r--r-- 1 boinc boinc        27 May 18 07:55 wrapper_checkpoint.txt
[2024-05-18 07:55:59] -rw------- 1 boinc boinc      7772 May 18 07:55 heartbeat.json
[2024-05-18 07:55:59] -rw------- 1 boinc boinc      4591 May 18 07:55 pilotlog.txt
[2024-05-18 07:55:59] -rw------- 1 boinc boinc    399984 May 18 07:55 log.38776104._014768.job.log.1
[2024-05-18 07:55:59] -rw------- 1 boinc boinc       357 May 18 07:55 output.list
[2024-05-18 07:55:59] -rw-r--r-- 1 boinc boinc       620 May 18 07:55 runtime_log
[2024-05-18 07:55:59] -rw------- 1 boinc boinc    788480 May 18 07:55 result.tar.gz
[2024-05-18 07:55:59] -rw-r--r-- 1 boinc boinc     11130 May 18 07:55 runtime_log.err
[2024-05-18 07:55:59] -rw------- 1 boinc boinc       652 May 18 07:55 iNuNDmYgNS5n9Rq4apoT9bVoABFKDmABFKDmlqFKDmRcLKDmPU0oBo.diag
[2024-05-18 07:55:59] -rw-r--r-- 1 boinc boinc     21719 May 18 07:55 stderr.txt
[2024-05-18 07:55:59] HITS file was successfully produced:
[2024-05-18 07:55:59] -rw------- 1 boinc boinc 235943234 May 18 07:54 shared/HITS.pool.root.1
[2024-05-18 07:55:59]  *** Contents of shared directory: ***
[2024-05-18 07:55:59] total 818364
[2024-05-18 07:55:59] -rw-r--r-- 2 boinc boinc 600752576 May 18 06:47 ATLAS.root_0
[2024-05-18 07:55:59] -rw-r--r-- 2 boinc boinc     17537 May 18 06:47 start_atlas.sh
[2024-05-18 07:55:59] -rw-r--r-- 2 boinc boinc    480005 May 18 06:47 input.tar.gz
[2024-05-18 07:55:59] -rw------- 1 boinc boinc 235943234 May 18 07:54 HITS.pool.root.1
[2024-05-18 07:55:59] -rw------- 1 boinc boinc    788480 May 18 07:55 result.tar.gz
07:56:00 (196703): run_atlas exited; CPU time 35335.926081
07:56:00 (196703): called boinc_finish(0)

</stderr_txt>
]]>

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