Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
04:25:34 (276651): wrapper (7.7.26015): starting
04:25:34 (276651): wrapper: running run_atlas (--nthreads 12)
[2024-05-18 04:25:34] Arguments: --nthreads 12
[2024-05-18 04:25:34] Threads: 12
[2024-05-18 04:25:34] Checking for CVMFS
[2024-05-18 04:25:34] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-18 04:25:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-18 04:25:34] Running cvmfs_config stat atlas.cern.ch
[2024-05-18 04:25:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-18 04:25:34] 2.9.2.0 179502 184853 165572 132878 0 64 45425859 45568000 9779 130560 0 1238657509 99.804 700834032 18670 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2024-05-18 04:25:34] CVMFS is ok
[2024-05-18 04:25:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-18 04:25:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-18 04:25:34] Further information can be found at the LHC@home message board.
[2024-05-18 04:25:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-18 04:25:34] Checking for apptainer binary...
[2024-05-18 04:25:34] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-18 04:25:34] Running /usr/bin/apptainer --version
[2024-05-18 04:25:34] apptainer version 1.1.8-1.el7
[2024-05-18 04:25:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-18 04:25:35] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0169.triumf.lcg
[2024-05-18 04:25:35] apptainer works
[2024-05-18 04:25:35] Set ATHENA_PROC_NUMBER=12
[2024-05-18 04:25:35] Set ATHENA_CORE_NUMBER=12
[2024-05-18 04:25:35] Starting ATLAS job with PandaID=6208377805
[2024-05-18 04:25:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-18 05:32:36]  *** The last 200 lines of the pilot log: ***
[2024-05-18 05:32:36]  guid=0219a9dd-807c-4451-a129-287287938a66
[2024-05-18 05:32:36]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-18 05:32:36]  is_tar=False
[2024-05-18 05:32:36]  lfn=log.38776146._015703.job.log.tgz.1
[2024-05-18 05:32:36]  mtime=0
[2024-05-18 05:32:36]  protocol_id=None
[2024-05-18 05:32:36]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-18 05:32:36]  replicas=None
[2024-05-18 05:32:36]  scope=mc23_13p6TeV
[2024-05-18 05:32:36]  status=None
[2024-05-18 05:32:36]  status_code=0
[2024-05-18 05:32:36]  storage_token=
[2024-05-18 05:32:36]  surl=/home/boinc/slots/0/PanDA_Pilot-6208377805/log.38776146._015703.job.log.tgz.1
[2024-05-18 05:32:36]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e4/01/log.38776146._015703.job.log.tgz.1
[2024-05-18 05:32:36]  workdir=None
[2024-05-18 05:32:36] ]
[2024-05-18 05:32:36] 2024-05-18 12:32:08,901 | INFO     | transferring file log.38776146._015703.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6208377805/log.38776146._015703.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-05-18 05:32:36] 2024-05-18 12:32:08,901 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6208377805/log.38776146._015703.job.log.tgz.1 /home/boinc/slots/0/log.38776146._015703.job.log.t
[2024-05-18 05:32:36] 2024-05-18 12:32:08,942 | INFO     | adding to output.list: log.38776146._015703.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e4/01/log.38776146._015703.job.log.tg
[2024-05-18 05:32:36] 2024-05-18 12:32:08,943 | INFO     | summary of transferred files:
[2024-05-18 05:32:36] 2024-05-18 12:32:08,943 | INFO     |  -- lfn=log.38776146._015703.job.log.tgz.1, status_code=0, status=transferred
[2024-05-18 05:32:36] 2024-05-18 12:32:08,943 | INFO     | stage-out finished correctly
[2024-05-18 05:32:36] 2024-05-18 12:32:10,928 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-18 05:32:36] 2024-05-18 12:32:12,337 | INFO     | job 6208377805 has state=finished
[2024-05-18 05:32:36] 2024-05-18 12:32:12,338 | INFO     | preparing for final server update for job 6208377805 in state='finished'
[2024-05-18 05:32:36] 2024-05-18 12:32:12,339 | INFO     | this job has now completed (state=finished)
[2024-05-18 05:32:36] 2024-05-18 12:32:12,339 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-18 05:32:36] 2024-05-18 12:32:12,340 | INFO     | job 6208377805 has finished - writing final server update
[2024-05-18 05:32:36] 2024-05-18 12:32:12,340 | INFO     | total number of processed events: 400 (read)
[2024-05-18 05:32:36] 2024-05-18 12:32:12,345 | INFO     | executing command: lscpu
[2024-05-18 05:32:36] 2024-05-18 12:32:12,384 | WARNING  | process 9309 is no longer using CPU - aborting
[2024-05-18 05:32:36] 2024-05-18 12:32:12,385 | INFO     | will not send any job update
[2024-05-18 05:32:36] 2024-05-18 12:32:12,458 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-18 05:32:36] 2024-05-18 12:32:12,458 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-18 05:32:36] 2024-05-18 12:32:12,535 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-18 05:32:36] 2024-05-18 12:32:14,888 | INFO     | monitor loop #314: job 0:6208377805 is in state 'finished'
[2024-05-18 05:32:36] 2024-05-18 12:32:14,889 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 05:32:36] 2024-05-18 12:32:17,390 | INFO     | monitor loop #315: job 0:6208377805 is in state 'finished'
[2024-05-18 05:32:36] 2024-05-18 12:32:17,390 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 05:32:36] 2024-05-18 12:32:19,893 | INFO     | monitor loop #316: job 0:6208377805 is in state 'finished'
[2024-05-18 05:32:36] 2024-05-18 12:32:19,894 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 05:32:36] 2024-05-18 12:32:20,032 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-18 05:32:36] 2024-05-18 12:32:20,033 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6208377805/memory_monitor_summary.json (trf name=prmon)
[2024-05-18 05:32:36] 2024-05-18 12:32:20,033 | INFO     | extracted standard info from prmon json
[2024-05-18 05:32:36] 2024-05-18 12:32:20,034 | INFO     | extracted standard memory fields from prmon json
[2024-05-18 05:32:36] 2024-05-18 12:32:20,034 | WARNING  | GPU info not found in prmon json
[2024-05-18 05:32:36] 2024-05-18 12:32:20,034 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-18 05:32:36] 2024-05-18 12:32:20,034 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-18 05:32:36] 2024-05-18 12:32:20,035 | INFO     | fitting pss+swap vs Time
[2024-05-18 05:32:36] 2024-05-18 12:32:20,035 | INFO     | model: linear, x: [1716031894.0, 1716031955.0, 1716032016.0, 1716032077.0, 1716032138.0, 1716032199.0, 1716032260.0, 1716032321.0, 1716032382.0, 1716032443.0, 1716
[2024-05-18 05:32:36] 2024-05-18 12:32:20,035 | INFO     | sum of square deviations: 60482994.5
[2024-05-18 05:32:36] 2024-05-18 12:32:20,036 | INFO     | sum of deviations: 18458161074.500004
[2024-05-18 05:32:36] 2024-05-18 12:32:20,036 | INFO     | mean x: 1716033632.5
[2024-05-18 05:32:36] 2024-05-18 12:32:20,036 | INFO     | mean y: 2716965.5344827585
[2024-05-18 05:32:36] 2024-05-18 12:32:20,036 | INFO     | -- intersect: -523695315180.41595
[2024-05-18 05:32:36] 2024-05-18 12:32:20,036 | INFO     | intersect: -523695315180.41595
[2024-05-18 05:32:36] 2024-05-18 12:32:20,036 | INFO     | chi2: 2.3430092001958163
[2024-05-18 05:32:36] 2024-05-18 12:32:20,036 | INFO     | -- intersect: -523695315180.41595
[2024-05-18 05:32:36] 2024-05-18 12:32:20,036 | INFO     | current memory leak: 305.18 B/s (using 58 data points, chi2=2.34)
[2024-05-18 05:32:36] 2024-05-18 12:32:20,037 | INFO     | ..............................
[2024-05-18 05:32:36] 2024-05-18 12:32:20,037 | INFO     | . Timing measurements:
[2024-05-18 05:32:36] 2024-05-18 12:32:20,037 | INFO     | . get job = 0 s
[2024-05-18 05:32:36] 2024-05-18 12:32:20,037 | INFO     | . initial setup = 2 s
[2024-05-18 05:32:36] 2024-05-18 12:32:20,037 | INFO     | . payload setup = 8 s
[2024-05-18 05:32:36] 2024-05-18 12:32:20,037 | INFO     | . stage-in = 0 s
[2024-05-18 05:32:36] 2024-05-18 12:32:20,037 | INFO     | . payload execution = 3944 s
[2024-05-18 05:32:36] 2024-05-18 12:32:20,037 | INFO     | . stage-out = 0 s
[2024-05-18 05:32:36] 2024-05-18 12:32:20,037 | INFO     | . log creation = 0 s
[2024-05-18 05:32:36] 2024-05-18 12:32:20,037 | INFO     | ..............................
[2024-05-18 05:32:36] 2024-05-18 12:32:20,098 | INFO     | 
[2024-05-18 05:32:36] 2024-05-18 12:32:20,098 | INFO     | job summary report
[2024-05-18 05:32:36] 2024-05-18 12:32:20,098 | INFO     | --------------------------------------------------
[2024-05-18 05:32:36] 2024-05-18 12:32:20,098 | INFO     | PanDA job id: 6208377805
[2024-05-18 05:32:36] 2024-05-18 12:32:20,098 | INFO     | task id: 38776146
[2024-05-18 05:32:36] 2024-05-18 12:32:20,099 | INFO     | errors: (none)
[2024-05-18 05:32:36] 2024-05-18 12:32:20,099 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-18 05:32:36] 2024-05-18 12:32:20,099 | INFO     | pilot state: finished 
[2024-05-18 05:32:36] 2024-05-18 12:32:20,099 | INFO     | transexitcode: 0
[2024-05-18 05:32:36] 2024-05-18 12:32:20,099 | INFO     | exeerrorcode: 0
[2024-05-18 05:32:36] 2024-05-18 12:32:20,099 | INFO     | exeerrordiag: 
[2024-05-18 05:32:36] 2024-05-18 12:32:20,099 | INFO     | exitcode: 0
[2024-05-18 05:32:36] 2024-05-18 12:32:20,099 | INFO     | exitmsg: OK
[2024-05-18 05:32:36] 2024-05-18 12:32:20,099 | INFO     | cpuconsumptiontime: 36033 s
[2024-05-18 05:32:36] 2024-05-18 12:32:20,099 | INFO     | nevents: 400
[2024-05-18 05:32:36] 2024-05-18 12:32:20,100 | INFO     | neventsw: 0
[2024-05-18 05:32:36] 2024-05-18 12:32:20,100 | INFO     | pid: 9309
[2024-05-18 05:32:36] 2024-05-18 12:32:20,100 | INFO     | pgrp: 9309
[2024-05-18 05:32:36] 2024-05-18 12:32:20,100 | INFO     | corecount: 12
[2024-05-18 05:32:36] 2024-05-18 12:32:20,100 | INFO     | event service: False
[2024-05-18 05:32:36] 2024-05-18 12:32:20,100 | INFO     | sizes: {0: 2392170, 8: 2392376, 11: 2392404, 3956: 2418179, 3958: 2427133, 3960: 2427189, 3969: 2427487}
[2024-05-18 05:32:36] 2024-05-18 12:32:20,100 | INFO     | --------------------------------------------------
[2024-05-18 05:32:36] 2024-05-18 12:32:20,100 | INFO     | 
[2024-05-18 05:32:36] 2024-05-18 12:32:20,100 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-18 05:32:36] 2024-05-18 12:32:20,144 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-18 05:32:36] 2024-05-18 12:32:20,144 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-18 05:32:36] 2024-05-18 12:32:20,144 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-18 05:32:36] 2024-05-18 12:32:20,144 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-18 05:32:36] 2024-05-18 12:32:20,145 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-18 05:32:36] 2024-05-18 12:32:20,145 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-18 05:32:36] 2024-05-18 12:32:20,145 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-18 05:32:36] 2024-05-18 12:32:20,145 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-18 05:32:36] 2024-05-18 12:32:20,145 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-18 05:32:36] 2024-05-18 12:32:20,145 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-18 05:32:36] 2024-05-18 12:32:20,145 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-18 05:32:36] 2024-05-18 12:32:20,145 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-18 05:32:36] 2024-05-18 12:32:20,145 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-18 05:32:36] 2024-05-18 12:32:20,145 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-18 05:32:36] 2024-05-18 12:32:20,145 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-18 05:32:36] 2024-05-18 12:32:20,145 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-18 05:32:36] 2024-05-18 12:32:20,145 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-18 05:32:36] 2024-05-18 12:32:20,145 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-18 05:32:36] 2024-05-18 12:32:20,145 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-18 05:32:36] 2024-05-18 12:32:20,145 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-18 05:32:36] 2024-05-18 12:32:20,145 | INFO     | job 6208377805 has completed (purged errors)
[2024-05-18 05:32:36] 2024-05-18 12:32:20,145 | INFO     | overall cleanup function is called
[2024-05-18 05:32:36] 2024-05-18 12:32:21,152 | INFO     | --- collectZombieJob: --- 10, [9309]
[2024-05-18 05:32:36] 2024-05-18 12:32:21,153 | INFO     | zombie collector waiting for pid 9309
[2024-05-18 05:32:36] 2024-05-18 12:32:21,153 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-18 05:32:36] 2024-05-18 12:32:22,158 | INFO     | collected zombie processes
[2024-05-18 05:32:36] 2024-05-18 12:32:22,158 | INFO     | will now attempt to kill all subprocesses of pid=9309
[2024-05-18 05:32:36] 2024-05-18 12:32:22,261 | INFO     | process IDs to be killed: [9309] (in reverse order)
[2024-05-18 05:32:36] 2024-05-18 12:32:22,377 | WARNING  | found no corresponding commands to process id(s)
[2024-05-18 05:32:36] 2024-05-18 12:32:22,378 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-18 05:32:36] 2024-05-18 12:32:22,386 | INFO     | did not find any defunct processes belonging to 9309
[2024-05-18 05:32:36] 2024-05-18 12:32:22,394 | INFO     | did not find any defunct processes belonging to 9309
[2024-05-18 05:32:36] 2024-05-18 12:32:22,394 | INFO     | ready for new job
[2024-05-18 05:32:36] 2024-05-18 12:32:22,394 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-18 05:32:36] 2024-05-18 12:32:22,395 | INFO     | *************************************
[2024-05-18 05:32:36] 2024-05-18 12:32:22,396 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-18 05:32:36] 2024-05-18 12:32:22,396 | INFO     | *************************************
[2024-05-18 05:32:36] 2024-05-18 12:32:22,396 | INFO     | 
[2024-05-18 05:32:36] 2024-05-18 12:32:22,399 | INFO     | architecture information:
[2024-05-18 05:32:36] 2024-05-18 12:32:22,399 | INFO     | executing command: cat /etc/os-release
[2024-05-18 05:32:36] 2024-05-18 12:32:22,434 | INFO     | cat /etc/os-release:
[2024-05-18 05:32:36] NAME="CentOS Linux"
[2024-05-18 05:32:36] VERSION="7 (Core)"
[2024-05-18 05:32:36] ID="centos"
[2024-05-18 05:32:36] ID_LIKE="rhel fedora"
[2024-05-18 05:32:36] VERSION_ID="7"
[2024-05-18 05:32:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-18 05:32:36] ANSI_COLOR="0;31"
[2024-05-18 05:32:36] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-18 05:32:36] HOME_URL="https://www.centos.org/"
[2024-05-18 05:32:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-18 05:32:36] 
[2024-05-18 05:32:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-18 05:32:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-18 05:32:36] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-18 05:32:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-18 05:32:36] 
[2024-05-18 05:32:36] 2024-05-18 12:32:22,434 | INFO     | *************************************
[2024-05-18 05:32:36] 2024-05-18 12:32:22,937 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-18 05:32:36] 2024-05-18 12:32:22,986 | INFO     | sufficient remaining disk space (2428558639104 B)
[2024-05-18 05:32:36] 2024-05-18 12:32:22,986 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-18 05:32:36] 2024-05-18 12:32:22,986 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-18 05:32:36] 2024-05-18 12:32:22,987 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-18 05:32:36] 2024-05-18 12:32:22,987 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-18 05:32:36] 2024-05-18 12:32:22,988 | INFO     | found 0 job(s) in 20 queues
[2024-05-18 05:32:36] 2024-05-18 12:32:22,988 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-18 05:32:36] 2024-05-18 12:32:22,988 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-18 05:32:36] 2024-05-18 12:32:23,403 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-18 05:32:36] 2024-05-18 12:32:23,404 | INFO     | aborting loop
[2024-05-18 05:32:36] 2024-05-18 12:32:23,690 | INFO     | all data control threads have been joined
[2024-05-18 05:32:36] 2024-05-18 12:32:23,885 | INFO     | all payload control threads have been joined
[2024-05-18 05:32:36] 2024-05-18 12:32:23,993 | INFO     | [job] retrieve thread has finished
[2024-05-18 05:32:36] 2024-05-18 12:32:24,039 | INFO     | all job control threads have been joined
[2024-05-18 05:32:36] 2024-05-18 12:32:24,209 | INFO     | [payload] execute_payloads thread has finished
[2024-05-18 05:32:36] 2024-05-18 12:32:24,299 | INFO     | [payload] validate_post thread has finished
[2024-05-18 05:32:36] 2024-05-18 12:32:24,409 | INFO     | [job] job monitor thread has finished
[2024-05-18 05:32:36] 2024-05-18 12:32:24,695 | INFO     | [data] control thread has finished
[2024-05-18 05:32:36] 2024-05-18 12:32:24,839 | INFO     | [job] validate thread has finished
[2024-05-18 05:32:36] 2024-05-18 12:32:24,864 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-18 05:32:36] 2024-05-18 12:32:24,891 | INFO     | [payload] control thread has finished
[2024-05-18 05:32:36] 2024-05-18 12:32:24,995 | INFO     | [data] copytool_out thread has finished
[2024-05-18 05:32:36] 2024-05-18 12:32:24,996 | INFO     | [payload] failed_post thread has finished
[2024-05-18 05:32:36] 2024-05-18 12:32:25,030 | INFO     | [job] create_data_payload thread has finished
[2024-05-18 05:32:36] 2024-05-18 12:32:25,045 | INFO     | [job] control thread has finished
[2024-05-18 05:32:36] 2024-05-18 12:32:25,104 | INFO     | [data] copytool_in thread has finished
[2024-05-18 05:32:36] 2024-05-18 12:32:25,111 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-18 05:32:36] 2024-05-18 12:32:25,180 | INFO     | [payload] validate_pre thread has finished
[2024-05-18 05:32:36] 2024-05-18 12:32:26,017 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-18 05:32:36] 2024-05-18 12:32:26,116 | INFO     | [job] queue monitor thread has finished
[2024-05-18 05:32:36] 2024-05-18 12:32:30,023 | INFO     | [data] queue_monitor thread has finished
[2024-05-18 05:32:36] 2024-05-18 12:32:30,770 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139716085155648)>', '<ExcThread(monitor, started 139715655218944)>']
[2024-05-18 05:32:36] 2024-05-18 12:32:31,024 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-18 05:32:36] 2024-05-18 12:32:31,024 | INFO     | [monitor] control thread has ended
[2024-05-18 05:32:36] 2024-05-18 12:32:35,796 | INFO     | all workflow threads have been joined
[2024-05-18 05:32:36] 2024-05-18 12:32:35,796 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-18 05:32:36] 2024-05-18 12:32:35,797 | INFO     | traces error code: 0
[2024-05-18 05:32:36] 2024-05-18 12:32:35,797 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-18 05:32:36] 2024-05-18 12:32:35,895 [wrapper] ==== pilot stdout END ====
[2024-05-18 05:32:36] 2024-05-18 12:32:35,909 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-18 05:32:36] 2024-05-18 12:32:35,922 [wrapper] pilotpid: 2804
[2024-05-18 05:32:36] 2024-05-18 12:32:35,937 [wrapper] Pilot exit status: 0
[2024-05-18 05:32:36] 2024-05-18 12:32:35,976 [wrapper] pandaids: 6208377805
[2024-05-18 05:32:36] 2024-05-18 12:32:36,044 [wrapper] cleanup: SIGTERM to supervisor_pilot 253783 2805
[2024-05-18 05:32:36] 2024-05-18 12:32:36,059 [wrapper] Test setup, not cleaning
[2024-05-18 05:32:36] 2024-05-18 12:32:36,074 [wrapper] ==== wrapper stdout END ====
[2024-05-18 05:32:36] 2024-05-18 12:32:36,089 [wrapper] ==== wrapper stderr END ====
[2024-05-18 05:32:36] 2024-05-18 12:32:36,111 [wrapper] apfmon messages muted
[2024-05-18 05:32:36]  *** Error codes and diagnostics ***
[2024-05-18 05:32:36]     "exeErrorCode": 0,
[2024-05-18 05:32:36]     "exeErrorDiag": "",
[2024-05-18 05:32:36]     "pilotErrorCode": 0,
[2024-05-18 05:32:36]     "pilotErrorDiag": "",
[2024-05-18 05:32:36]  *** Listing of results directory ***
[2024-05-18 05:32:36] total 870080
[2024-05-18 05:32:36] -rw-r--r-- 1 boinc boinc    467845 May 17 16:54 pilot3.tar.gz
[2024-05-18 05:32:36] -rw-r--r-- 1 boinc boinc      5633 May 17 17:16 queuedata.json
[2024-05-18 05:32:36] -rwx------ 1 boinc boinc     32251 May 17 17:18 runpilot2-wrapper.sh
[2024-05-18 05:32:36] -rw-r--r-- 1 boinc boinc       100 May 18 04:25 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-18 05:32:36] -rwxr-xr-x 1 boinc boinc      7986 May 18 04:25 run_atlas
[2024-05-18 05:32:36] -rw-r--r-- 1 boinc boinc       105 May 18 04:25 job.xml
[2024-05-18 05:32:36] -rw-r--r-- 2 boinc boinc 610893500 May 18 04:25 EVNT.38776140._000073.pool.root.1
[2024-05-18 05:32:36] -rw-r--r-- 1 boinc boinc      6652 May 18 04:25 init_data.xml
[2024-05-18 05:32:36] -rw-r--r-- 2 boinc boinc     17537 May 18 04:25 start_atlas.sh
[2024-05-18 05:32:36] drwxrwx--x 2 boinc boinc      4096 May 18 04:25 shared
[2024-05-18 05:32:36] -rw-r--r-- 2 boinc boinc    480005 May 18 04:25 input.tar.gz
[2024-05-18 05:32:36] -rw-r--r-- 1 boinc boinc         0 May 18 04:25 boinc_lockfile
[2024-05-18 05:32:36] -rw-r--r-- 1 boinc boinc      2613 May 18 04:25 pandaJob.out
[2024-05-18 05:32:36] -rw------- 1 boinc boinc       424 May 18 04:25 setup.sh.local
[2024-05-18 05:32:36] -rw------- 1 boinc boinc   1019073 May 18 04:25 agis_schedconf.cvmfs.json
[2024-05-18 05:32:36] -rw------- 1 boinc boinc         0 May 18 04:25 agis_ddmendpoints.agis.ALL.json
[2024-05-18 05:32:36] -rw------- 1 boinc boinc   1324701 May 18 04:25 cric_ddmendpoints.json
[2024-05-18 05:32:36] drwx------ 4 boinc boinc      4096 May 18 04:25 pilot3
[2024-05-18 05:32:36] -rw-r--r-- 1 boinc boinc       531 May 18 05:31 boinc_task_state.xml
[2024-05-18 05:32:36] -rw------- 1 boinc boinc 274990208 May 18 05:31 HITS.38776146._015703.pool.root.1
[2024-05-18 05:32:36] -rw------- 1 boinc boinc        95 May 18 05:32 pilot_heartbeat.json
[2024-05-18 05:32:36] -rw------- 1 boinc boinc      1060 May 18 05:32 memory_monitor_summary.json
[2024-05-18 05:32:36] -rw------- 1 boinc boinc    369771 May 18 05:32 log.38776146._015703.job.log.tgz.1
[2024-05-18 05:32:36] -rw------- 1 boinc boinc      7770 May 18 05:32 heartbeat.json
[2024-05-18 05:32:36] -rw-r--r-- 1 boinc boinc      8192 May 18 05:32 boinc_mmap_file
[2024-05-18 05:32:36] -rw-r--r-- 1 boinc boinc        27 May 18 05:32 wrapper_checkpoint.txt
[2024-05-18 05:32:36] -rw------- 1 boinc boinc      4333 May 18 05:32 pilotlog.txt
[2024-05-18 05:32:36] -rw------- 1 boinc boinc    403090 May 18 05:32 log.38776146._015703.job.log.1
[2024-05-18 05:32:36] -rw------- 1 boinc boinc       357 May 18 05:32 output.list
[2024-05-18 05:32:36] -rw-r--r-- 1 boinc boinc       620 May 18 05:32 runtime_log
[2024-05-18 05:32:36] -rw------- 1 boinc boinc    788480 May 18 05:32 result.tar.gz
[2024-05-18 05:32:36] -rw-r--r-- 1 boinc boinc     11286 May 18 05:32 runtime_log.err
[2024-05-18 05:32:36] -rw------- 1 boinc boinc       655 May 18 05:32 0oqKDmmxMS5nsSi4apGgGQJmABFKDmABFKDm4ySLDmpkRKDmTEuZKo.diag
[2024-05-18 05:32:36] -rw-r--r-- 1 boinc boinc     21765 May 18 05:32 stderr.txt
[2024-05-18 05:32:36] HITS file was successfully produced:
[2024-05-18 05:32:36] -rw------- 1 boinc boinc 274990208 May 18 05:31 shared/HITS.pool.root.1
[2024-05-18 05:32:36]  *** Contents of shared directory: ***
[2024-05-18 05:32:36] total 866396
[2024-05-18 05:32:36] -rw-r--r-- 2 boinc boinc 610893500 May 18 04:25 ATLAS.root_0
[2024-05-18 05:32:36] -rw-r--r-- 2 boinc boinc     17537 May 18 04:25 start_atlas.sh
[2024-05-18 05:32:36] -rw-r--r-- 2 boinc boinc    480005 May 18 04:25 input.tar.gz
[2024-05-18 05:32:36] -rw------- 1 boinc boinc 274990208 May 18 05:31 HITS.pool.root.1
[2024-05-18 05:32:36] -rw------- 1 boinc boinc    788480 May 18 05:32 result.tar.gz
05:32:38 (276651): run_atlas exited; CPU time 35893.787671
05:32:38 (276651): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN