Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
05:31:13 (151027): wrapper (7.7.26015): starting
05:31:13 (151027): wrapper: running run_atlas (--nthreads 12)
[2024-05-18 05:31:13] Arguments: --nthreads 12
[2024-05-18 05:31:13] Threads: 12
[2024-05-18 05:31:13] Checking for CVMFS
[2024-05-18 05:31:13] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-18 05:31:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-18 05:31:13] Running cvmfs_config stat atlas.cern.ch
[2024-05-18 05:31:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-18 05:31:13] 2.10.1.0 231771 184917 160980 132879 2 271 41250411 45568000 8214 130560 0 1194436256 99.779 680400712 17228 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2024-05-18 05:31:13] CVMFS is ok
[2024-05-18 05:31:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-18 05:31:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-18 05:31:13] Further information can be found at the LHC@home message board.
[2024-05-18 05:31:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-18 05:31:13] Checking for apptainer binary...
[2024-05-18 05:31:13] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-18 05:31:13] Running /usr/bin/apptainer --version
[2024-05-18 05:31:13] apptainer version 1.1.8-1.el7
[2024-05-18 05:31:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-18 05:31:14] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0104.triumf.lcg
[2024-05-18 05:31:14] apptainer works
[2024-05-18 05:31:14] Set ATHENA_PROC_NUMBER=12
[2024-05-18 05:31:14] Set ATHENA_CORE_NUMBER=12
[2024-05-18 05:31:14] Starting ATLAS job with PandaID=6208377779
[2024-05-18 05:31:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-18 07:00:06]  *** The last 200 lines of the pilot log: ***
[2024-05-18 07:00:06]  domain=
[2024-05-18 07:00:06]  filesize=384422
[2024-05-18 07:00:06]  filetype=log
[2024-05-18 07:00:06]  guid=ae53ab73-4213-42a8-b6b1-fb2cd5de312c
[2024-05-18 07:00:06]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-18 07:00:06]  is_tar=False
[2024-05-18 07:00:06]  lfn=log.38920982._003523.job.log.tgz.1
[2024-05-18 07:00:06]  mtime=0
[2024-05-18 07:00:06]  protocol_id=None
[2024-05-18 07:00:06]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-18 07:00:06]  replicas=None
[2024-05-18 07:00:06]  scope=mc23_13p6TeV
[2024-05-18 07:00:06]  status=None
[2024-05-18 07:00:06]  status_code=0
[2024-05-18 07:00:06]  storage_token=
[2024-05-18 07:00:06]  surl=/home/boinc/slots/0/PanDA_Pilot-6208377779/log.38920982._003523.job.log.tgz.1
[2024-05-18 07:00:06]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/50/89/log.38920982._003523.job.log.tgz.1
[2024-05-18 07:00:06]  workdir=None
[2024-05-18 07:00:06] ]
[2024-05-18 07:00:06] 2024-05-18 13:59:38,939 | INFO     | transferring file log.38920982._003523.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6208377779/log.38920982._003523.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-05-18 07:00:06] 2024-05-18 13:59:38,939 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6208377779/log.38920982._003523.job.log.tgz.1 /home/boinc/slots/0/log.38920982._003523.job.log.t
[2024-05-18 07:00:06] 2024-05-18 13:59:38,955 | INFO     | adding to output.list: log.38920982._003523.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/50/89/log.38920982._003523.job.log.tg
[2024-05-18 07:00:06] 2024-05-18 13:59:38,957 | INFO     | summary of transferred files:
[2024-05-18 07:00:06] 2024-05-18 13:59:38,957 | INFO     |  -- lfn=log.38920982._003523.job.log.tgz.1, status_code=0, status=transferred
[2024-05-18 07:00:06] 2024-05-18 13:59:38,957 | INFO     | stage-out finished correctly
[2024-05-18 07:00:06] 2024-05-18 13:59:40,625 | INFO     | monitor loop #416: job 0:6208377779 is in state 'finished'
[2024-05-18 07:00:06] 2024-05-18 13:59:40,625 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 07:00:06] 2024-05-18 13:59:41,472 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-18 07:00:06] 2024-05-18 13:59:41,564 | INFO     | job 6208377779 has state=finished
[2024-05-18 07:00:06] 2024-05-18 13:59:41,564 | INFO     | preparing for final server update for job 6208377779 in state='finished'
[2024-05-18 07:00:06] 2024-05-18 13:59:41,565 | INFO     | this job has now completed (state=finished)
[2024-05-18 07:00:06] 2024-05-18 13:59:41,565 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-18 07:00:06] 2024-05-18 13:59:41,565 | INFO     | job 6208377779 has finished - writing final server update
[2024-05-18 07:00:06] 2024-05-18 13:59:41,565 | INFO     | total number of processed events: 400 (read)
[2024-05-18 07:00:06] 2024-05-18 13:59:41,569 | INFO     | executing command: lscpu
[2024-05-18 07:00:06] 2024-05-18 13:59:41,621 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-18 07:00:06] 2024-05-18 13:59:41,621 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-18 07:00:06] 2024-05-18 13:59:41,670 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-18 07:00:06] 2024-05-18 13:59:43,126 | INFO     | monitor loop #417: job 0:6208377779 is in state 'finished'
[2024-05-18 07:00:06] 2024-05-18 13:59:43,127 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 07:00:06] 2024-05-18 13:59:45,273 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-18 07:00:06] 2024-05-18 13:59:45,273 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6208377779/memory_monitor_summary.json (trf name=prmon)
[2024-05-18 07:00:06] 2024-05-18 13:59:45,274 | INFO     | extracted standard info from prmon json
[2024-05-18 07:00:06] 2024-05-18 13:59:45,274 | INFO     | extracted standard memory fields from prmon json
[2024-05-18 07:00:06] 2024-05-18 13:59:45,274 | WARNING  | GPU info not found in prmon json
[2024-05-18 07:00:06] 2024-05-18 13:59:45,274 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-18 07:00:06] 2024-05-18 13:59:45,274 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-18 07:00:06] 2024-05-18 13:59:45,276 | INFO     | fitting pss+swap vs Time
[2024-05-18 07:00:06] 2024-05-18 13:59:45,276 | INFO     | model: linear, x: [1716035812.0, 1716035873.0, 1716035934.0, 1716035995.0, 1716036056.0, 1716036117.0, 1716036178.0, 1716036239.0, 1716036300.0, 1716036361.0, 1716
[2024-05-18 07:00:06] 2024-05-18 13:59:45,276 | INFO     | sum of square deviations: 158737860.0
[2024-05-18 07:00:06] 2024-05-18 13:59:45,276 | INFO     | sum of deviations: 20065449525.499996
[2024-05-18 07:00:06] 2024-05-18 13:59:45,276 | INFO     | mean x: 1716038221.5
[2024-05-18 07:00:06] 2024-05-18 13:59:45,277 | INFO     | mean y: 2725585.5125
[2024-05-18 07:00:06] 2024-05-18 13:59:45,277 | INFO     | -- intersect: -216915143392.54373
[2024-05-18 07:00:06] 2024-05-18 13:59:45,277 | INFO     | intersect: -216915143392.54373
[2024-05-18 07:00:06] 2024-05-18 13:59:45,277 | INFO     | chi2: 2.5823883102197147
[2024-05-18 07:00:06] 2024-05-18 13:59:45,277 | INFO     | -- intersect: -216915143392.54373
[2024-05-18 07:00:06] 2024-05-18 13:59:45,277 | INFO     | current memory leak: 126.41 B/s (using 80 data points, chi2=2.58)
[2024-05-18 07:00:06] 2024-05-18 13:59:45,277 | INFO     | ..............................
[2024-05-18 07:00:06] 2024-05-18 13:59:45,277 | INFO     | . Timing measurements:
[2024-05-18 07:00:06] 2024-05-18 13:59:45,277 | INFO     | . get job = 0 s
[2024-05-18 07:00:06] 2024-05-18 13:59:45,277 | INFO     | . initial setup = 2 s
[2024-05-18 07:00:06] 2024-05-18 13:59:45,278 | INFO     | . payload setup = 5 s
[2024-05-18 07:00:06] 2024-05-18 13:59:45,278 | INFO     | . stage-in = 0 s
[2024-05-18 07:00:06] 2024-05-18 13:59:45,278 | INFO     | . payload execution = 5269 s
[2024-05-18 07:00:06] 2024-05-18 13:59:45,278 | INFO     | . stage-out = 0 s
[2024-05-18 07:00:06] 2024-05-18 13:59:45,278 | INFO     | . log creation = 0 s
[2024-05-18 07:00:06] 2024-05-18 13:59:45,278 | INFO     | ..............................
[2024-05-18 07:00:06] 2024-05-18 13:59:45,337 | INFO     | 
[2024-05-18 07:00:06] 2024-05-18 13:59:45,338 | INFO     | job summary report
[2024-05-18 07:00:06] 2024-05-18 13:59:45,338 | INFO     | --------------------------------------------------
[2024-05-18 07:00:06] 2024-05-18 13:59:45,338 | INFO     | PanDA job id: 6208377779
[2024-05-18 07:00:06] 2024-05-18 13:59:45,338 | INFO     | task id: 38920982
[2024-05-18 07:00:06] 2024-05-18 13:59:45,338 | INFO     | errors: (none)
[2024-05-18 07:00:06] 2024-05-18 13:59:45,338 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-18 07:00:06] 2024-05-18 13:59:45,338 | INFO     | pilot state: finished 
[2024-05-18 07:00:06] 2024-05-18 13:59:45,338 | INFO     | transexitcode: 0
[2024-05-18 07:00:06] 2024-05-18 13:59:45,339 | INFO     | exeerrorcode: 0
[2024-05-18 07:00:06] 2024-05-18 13:59:45,339 | INFO     | exeerrordiag: 
[2024-05-18 07:00:06] 2024-05-18 13:59:45,339 | INFO     | exitcode: 0
[2024-05-18 07:00:06] 2024-05-18 13:59:45,339 | INFO     | exitmsg: OK
[2024-05-18 07:00:06] 2024-05-18 13:59:45,339 | INFO     | cpuconsumptiontime: 51834 s
[2024-05-18 07:00:06] 2024-05-18 13:59:45,339 | INFO     | nevents: 400
[2024-05-18 07:00:06] 2024-05-18 13:59:45,339 | INFO     | neventsw: 0
[2024-05-18 07:00:06] 2024-05-18 13:59:45,339 | INFO     | pid: 161758
[2024-05-18 07:00:06] 2024-05-18 13:59:45,339 | INFO     | pgrp: 161758
[2024-05-18 07:00:06] 2024-05-18 13:59:45,340 | INFO     | corecount: 12
[2024-05-18 07:00:06] 2024-05-18 13:59:45,340 | INFO     | event service: False
[2024-05-18 07:00:06] 2024-05-18 13:59:45,340 | INFO     | sizes: {0: 2392185, 4: 2392391, 11: 2392419, 5278: 2418897, 5281: 2427851, 5283: 2427907, 5287: 2428205}
[2024-05-18 07:00:06] 2024-05-18 13:59:45,340 | INFO     | --------------------------------------------------
[2024-05-18 07:00:06] 2024-05-18 13:59:45,340 | INFO     | 
[2024-05-18 07:00:06] 2024-05-18 13:59:45,340 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-18 07:00:06] 2024-05-18 13:59:45,370 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-18 07:00:06] 2024-05-18 13:59:45,370 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-18 07:00:06] 2024-05-18 13:59:45,371 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-18 07:00:06] 2024-05-18 13:59:45,371 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-18 07:00:06] 2024-05-18 13:59:45,371 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-18 07:00:06] 2024-05-18 13:59:45,371 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-18 07:00:06] 2024-05-18 13:59:45,371 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-18 07:00:06] 2024-05-18 13:59:45,371 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-18 07:00:06] 2024-05-18 13:59:45,371 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-18 07:00:06] 2024-05-18 13:59:45,371 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-18 07:00:06] 2024-05-18 13:59:45,372 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-18 07:00:06] 2024-05-18 13:59:45,372 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-18 07:00:06] 2024-05-18 13:59:45,372 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-18 07:00:06] 2024-05-18 13:59:45,372 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-18 07:00:06] 2024-05-18 13:59:45,372 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-18 07:00:06] 2024-05-18 13:59:45,372 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-18 07:00:06] 2024-05-18 13:59:45,372 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-18 07:00:06] 2024-05-18 13:59:45,372 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-18 07:00:06] 2024-05-18 13:59:45,372 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-18 07:00:06] 2024-05-18 13:59:45,373 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-18 07:00:06] 2024-05-18 13:59:45,373 | INFO     | job 6208377779 has completed (purged errors)
[2024-05-18 07:00:06] 2024-05-18 13:59:45,373 | INFO     | overall cleanup function is called
[2024-05-18 07:00:06] 2024-05-18 13:59:46,383 | INFO     | --- collectZombieJob: --- 10, [161758]
[2024-05-18 07:00:06] 2024-05-18 13:59:46,383 | INFO     | zombie collector waiting for pid 161758
[2024-05-18 07:00:06] 2024-05-18 13:59:46,383 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-18 07:00:06] 2024-05-18 13:59:47,389 | INFO     | collected zombie processes
[2024-05-18 07:00:06] 2024-05-18 13:59:47,389 | INFO     | will now attempt to kill all subprocesses of pid=161758
[2024-05-18 07:00:06] 2024-05-18 13:59:47,549 | INFO     | process IDs to be killed: [161758] (in reverse order)
[2024-05-18 07:00:06] 2024-05-18 13:59:47,678 | WARNING  | found no corresponding commands to process id(s)
[2024-05-18 07:00:06] 2024-05-18 13:59:47,679 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-18 07:00:06] 2024-05-18 13:59:47,688 | INFO     | did not find any defunct processes belonging to 161758
[2024-05-18 07:00:06] 2024-05-18 13:59:47,695 | INFO     | did not find any defunct processes belonging to 161758
[2024-05-18 07:00:06] 2024-05-18 13:59:47,696 | INFO     | ready for new job
[2024-05-18 07:00:06] 2024-05-18 13:59:47,696 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-18 07:00:06] 2024-05-18 13:59:47,698 | INFO     | *************************************
[2024-05-18 07:00:06] 2024-05-18 13:59:47,698 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-18 07:00:06] 2024-05-18 13:59:47,698 | INFO     | *************************************
[2024-05-18 07:00:06] 2024-05-18 13:59:47,698 | INFO     | 
[2024-05-18 07:00:06] 2024-05-18 13:59:47,702 | INFO     | architecture information:
[2024-05-18 07:00:06] 2024-05-18 13:59:47,702 | INFO     | executing command: cat /etc/os-release
[2024-05-18 07:00:06] 2024-05-18 13:59:47,721 | INFO     | cat /etc/os-release:
[2024-05-18 07:00:06] NAME="CentOS Linux"
[2024-05-18 07:00:06] VERSION="7 (Core)"
[2024-05-18 07:00:06] ID="centos"
[2024-05-18 07:00:06] ID_LIKE="rhel fedora"
[2024-05-18 07:00:06] VERSION_ID="7"
[2024-05-18 07:00:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-18 07:00:06] ANSI_COLOR="0;31"
[2024-05-18 07:00:06] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-18 07:00:06] HOME_URL="https://www.centos.org/"
[2024-05-18 07:00:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-18 07:00:06] 
[2024-05-18 07:00:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-18 07:00:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-18 07:00:06] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-18 07:00:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-18 07:00:06] 
[2024-05-18 07:00:06] 2024-05-18 13:59:47,721 | INFO     | *************************************
[2024-05-18 07:00:06] 2024-05-18 13:59:48,225 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-18 07:00:06] 2024-05-18 13:59:48,251 | INFO     | sufficient remaining disk space (2146590261248 B)
[2024-05-18 07:00:06] 2024-05-18 13:59:48,251 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-18 07:00:06] 2024-05-18 13:59:48,251 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-18 07:00:06] 2024-05-18 13:59:48,252 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-18 07:00:06] 2024-05-18 13:59:48,252 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-18 07:00:06] 2024-05-18 13:59:48,253 | INFO     | found 0 job(s) in 20 queues
[2024-05-18 07:00:06] 2024-05-18 13:59:48,253 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-18 07:00:06] 2024-05-18 13:59:48,253 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-18 07:00:06] 2024-05-18 13:59:48,318 | INFO     | all data control threads have been joined
[2024-05-18 07:00:06] 2024-05-18 13:59:48,701 | INFO     | all job control threads have been joined
[2024-05-18 07:00:06] 2024-05-18 13:59:49,143 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-18 07:00:06] 2024-05-18 13:59:49,144 | INFO     | aborting loop
[2024-05-18 07:00:06] 2024-05-18 13:59:49,205 | INFO     | all payload control threads have been joined
[2024-05-18 07:00:06] 2024-05-18 13:59:49,257 | INFO     | [job] retrieve thread has finished
[2024-05-18 07:00:06] 2024-05-18 13:59:49,319 | INFO     | [data] control thread has finished
[2024-05-18 07:00:06] 2024-05-18 13:59:49,539 | INFO     | [payload] execute_payloads thread has finished
[2024-05-18 07:00:06] 2024-05-18 13:59:49,554 | INFO     | [data] copytool_in thread has finished
[2024-05-18 07:00:06] 2024-05-18 13:59:49,565 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-18 07:00:06] 2024-05-18 13:59:49,698 | INFO     | [job] validate thread has finished
[2024-05-18 07:00:06] 2024-05-18 13:59:49,706 | INFO     | [job] control thread has finished
[2024-05-18 07:00:06] 2024-05-18 13:59:49,914 | INFO     | [job] create_data_payload thread has finished
[2024-05-18 07:00:06] 2024-05-18 13:59:49,928 | INFO     | [payload] failed_post thread has finished
[2024-05-18 07:00:06] 2024-05-18 13:59:50,088 | INFO     | [payload] validate_pre thread has finished
[2024-05-18 07:00:06] 2024-05-18 13:59:50,149 | INFO     | [job] job monitor thread has finished
[2024-05-18 07:00:06] 2024-05-18 13:59:50,210 | INFO     | [payload] control thread has finished
[2024-05-18 07:00:06] 2024-05-18 13:59:50,345 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-18 07:00:06] 2024-05-18 13:59:50,389 | INFO     | [payload] validate_post thread has finished
[2024-05-18 07:00:06] 2024-05-18 13:59:51,351 | INFO     | [job] queue monitor thread has finished
[2024-05-18 07:00:06] 2024-05-18 13:59:51,571 | INFO     | [data] copytool_out thread has finished
[2024-05-18 07:00:06] 2024-05-18 13:59:52,259 | INFO     | [data] queue_monitor thread has finished
[2024-05-18 07:00:06] 2024-05-18 13:59:59,073 | INFO     | job.realtimelogging is not enabled
[2024-05-18 07:00:06] 2024-05-18 14:00:00,081 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-18 07:00:06] 2024-05-18 14:00:00,828 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140672936138560)>', '<ExcThread(monitor, started 140672375969536)>']
[2024-05-18 07:00:06] 2024-05-18 14:00:01,301 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-18 07:00:06] 2024-05-18 14:00:01,301 | INFO     | [monitor] control thread has ended
[2024-05-18 07:00:06] 2024-05-18 14:00:05,853 | INFO     | all workflow threads have been joined
[2024-05-18 07:00:06] 2024-05-18 14:00:05,854 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-18 07:00:06] 2024-05-18 14:00:05,854 | INFO     | traces error code: 0
[2024-05-18 07:00:06] 2024-05-18 14:00:05,854 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-18 07:00:06] 2024-05-18 14:00:05,953 [wrapper] ==== pilot stdout END ====
[2024-05-18 07:00:06] 2024-05-18 14:00:05,958 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-18 07:00:06] 2024-05-18 14:00:05,962 [wrapper] pilotpid: 155200
[2024-05-18 07:00:06] 2024-05-18 14:00:05,965 [wrapper] Pilot exit status: 0
[2024-05-18 07:00:06] 2024-05-18 14:00:05,977 [wrapper] pandaids: 6208377779
[2024-05-18 07:00:06] 2024-05-18 14:00:06,062 [wrapper] cleanup: SIGTERM to supervisor_pilot 107356 155201
[2024-05-18 07:00:06] 2024-05-18 14:00:06,066 [wrapper] Test setup, not cleaning
[2024-05-18 07:00:06] 2024-05-18 14:00:06,069 [wrapper] ==== wrapper stdout END ====
[2024-05-18 07:00:06] 2024-05-18 14:00:06,071 [wrapper] ==== wrapper stderr END ====
[2024-05-18 07:00:06] 2024-05-18 14:00:06,077 [wrapper] apfmon messages muted
[2024-05-18 07:00:06]  *** Error codes and diagnostics ***
[2024-05-18 07:00:06]     "exeErrorCode": 0,
[2024-05-18 07:00:06]     "exeErrorDiag": "",
[2024-05-18 07:00:06]     "pilotErrorCode": 0,
[2024-05-18 07:00:06]     "pilotErrorDiag": "",
[2024-05-18 07:00:06]  *** Listing of results directory ***
[2024-05-18 07:00:06] total 921272
[2024-05-18 07:00:06] -rw-r--r-- 1 boinc boinc    467845 May 17 16:54 pilot3.tar.gz
[2024-05-18 07:00:06] -rwx------ 1 boinc boinc     32251 May 17 17:14 runpilot2-wrapper.sh
[2024-05-18 07:00:06] -rw-r--r-- 1 boinc boinc      5633 May 17 17:14 queuedata.json
[2024-05-18 07:00:06] -rw-r--r-- 1 boinc boinc       100 May 18 05:31 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-18 07:00:06] -rwxr-xr-x 1 boinc boinc      7986 May 18 05:31 run_atlas
[2024-05-18 07:00:06] -rw-r--r-- 1 boinc boinc       105 May 18 05:31 job.xml
[2024-05-18 07:00:06] -rw-r--r-- 2 boinc boinc 629645328 May 18 05:31 EVNT.38776160._000136.pool.root.1
[2024-05-18 07:00:06] -rw-r--r-- 1 boinc boinc      6625 May 18 05:31 init_data.xml
[2024-05-18 07:00:06] -rw-r--r-- 2 boinc boinc     17537 May 18 05:31 start_atlas.sh
[2024-05-18 07:00:06] drwxrwx--x 2 boinc boinc      4096 May 18 05:31 shared
[2024-05-18 07:00:06] -rw-r--r-- 2 boinc boinc    480002 May 18 05:31 input.tar.gz
[2024-05-18 07:00:06] -rw-r--r-- 1 boinc boinc         0 May 18 05:31 boinc_lockfile
[2024-05-18 07:00:06] -rw-r--r-- 1 boinc boinc      2627 May 18 05:31 pandaJob.out
[2024-05-18 07:00:06] -rw------- 1 boinc boinc       424 May 18 05:31 setup.sh.local
[2024-05-18 07:00:06] -rw------- 1 boinc boinc   1019073 May 18 05:31 agis_schedconf.cvmfs.json
[2024-05-18 07:00:06] -rw------- 1 boinc boinc         0 May 18 05:31 agis_ddmendpoints.agis.ALL.json
[2024-05-18 07:00:06] -rw------- 1 boinc boinc   1324701 May 18 05:31 cric_ddmendpoints.json
[2024-05-18 07:00:06] drwx------ 4 boinc boinc      4096 May 18 05:31 pilot3
[2024-05-18 07:00:06] -rw------- 1 boinc boinc 308398786 May 18 06:59 HITS.38920982._003523.pool.root.1
[2024-05-18 07:00:06] -rw-r--r-- 1 boinc boinc       530 May 18 06:59 boinc_task_state.xml
[2024-05-18 07:00:06] -rw------- 1 boinc boinc      1058 May 18 06:59 memory_monitor_summary.json
[2024-05-18 07:00:06] -rw------- 1 boinc boinc        95 May 18 06:59 pilot_heartbeat.json
[2024-05-18 07:00:06] -rw------- 1 boinc boinc    384422 May 18 06:59 log.38920982._003523.job.log.tgz.1
[2024-05-18 07:00:06] -rw------- 1 boinc boinc      7768 May 18 06:59 heartbeat.json
[2024-05-18 07:00:06] -rw------- 1 boinc boinc      4405 May 18 07:00 pilotlog.txt
[2024-05-18 07:00:06] -rw------- 1 boinc boinc    517269 May 18 07:00 log.38920982._003523.job.log.1
[2024-05-18 07:00:06] -rw------- 1 boinc boinc       357 May 18 07:00 output.list
[2024-05-18 07:00:06] -rw-r--r-- 1 boinc boinc       620 May 18 07:00 runtime_log
[2024-05-18 07:00:06] -rw------- 1 boinc boinc    921600 May 18 07:00 result.tar.gz
[2024-05-18 07:00:06] -rw------- 1 boinc boinc       653 May 18 07:00 zHQNDmMtMS5nsSi4apGgGQJmABFKDmABFKDm4ySLDmckRKDme1czSm.diag
[2024-05-18 07:00:06] -rw-r--r-- 1 boinc boinc     11286 May 18 07:00 runtime_log.err
[2024-05-18 07:00:06] -rw-r--r-- 1 boinc boinc      8192 May 18 07:00 boinc_mmap_file
[2024-05-18 07:00:06] -rw-r--r-- 1 boinc boinc        27 May 18 07:00 wrapper_checkpoint.txt
[2024-05-18 07:00:06] -rw-r--r-- 1 boinc boinc     21531 May 18 07:00 stderr.txt
[2024-05-18 07:00:06] HITS file was successfully produced:
[2024-05-18 07:00:06] -rw------- 1 boinc boinc 308398786 May 18 06:59 shared/HITS.pool.root.1
[2024-05-18 07:00:06]  *** Contents of shared directory: ***
[2024-05-18 07:00:06] total 917464
[2024-05-18 07:00:06] -rw-r--r-- 2 boinc boinc 629645328 May 18 05:31 ATLAS.root_0
[2024-05-18 07:00:06] -rw-r--r-- 2 boinc boinc     17537 May 18 05:31 start_atlas.sh
[2024-05-18 07:00:06] -rw-r--r-- 2 boinc boinc    480002 May 18 05:31 input.tar.gz
[2024-05-18 07:00:06] -rw------- 1 boinc boinc 308398786 May 18 06:59 HITS.pool.root.1
[2024-05-18 07:00:06] -rw------- 1 boinc boinc    921600 May 18 07:00 result.tar.gz
07:00:08 (151027): run_atlas exited; CPU time 51632.434499
07:00:08 (151027): called boinc_finish(0)

</stderr_txt>
]]>

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