Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
23:24:17 (255781): wrapper (7.7.26015): starting
23:24:17 (255781): wrapper: running run_atlas (--nthreads 12)
[2024-05-17 23:24:17] Arguments: --nthreads 12
[2024-05-17 23:24:17] Threads: 12
[2024-05-17 23:24:17] Checking for CVMFS
[2024-05-17 23:24:17] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-17 23:24:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-17 23:24:17] Running cvmfs_config stat atlas.cern.ch
[2024-05-17 23:24:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-17 23:24:18] 2.10.1.0 208920 16727 144172 132870 0 64 41012135 45568001 9287 130560 0 61061905 99.842 29410560 24224 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2024-05-17 23:24:18] CVMFS is ok
[2024-05-17 23:24:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-17 23:24:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-17 23:24:18] Further information can be found at the LHC@home message board.
[2024-05-17 23:24:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-17 23:24:18] Checking for apptainer binary...
[2024-05-17 23:24:18] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-17 23:24:18] Running /usr/bin/apptainer --version
[2024-05-17 23:24:18] apptainer version 1.1.8-1.el7
[2024-05-17 23:24:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-17 23:24:19] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0036.triumf.lcg
[2024-05-17 23:24:19] apptainer works
[2024-05-17 23:24:19] Set ATHENA_PROC_NUMBER=12
[2024-05-17 23:24:19] Set ATHENA_CORE_NUMBER=12
[2024-05-17 23:24:19] Starting ATLAS job with PandaID=6208377613
[2024-05-17 23:24:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-18 00:54:40]  *** The last 200 lines of the pilot log: ***
[2024-05-18 00:54:40]  filesize=383527
[2024-05-18 00:54:40]  filetype=log
[2024-05-18 00:54:40]  guid=f2884ca4-aead-40f1-ace7-02682b18b5f2
[2024-05-18 00:54:40]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-18 00:54:40]  is_tar=False
[2024-05-18 00:54:40]  lfn=log.38920982._003446.job.log.tgz.1
[2024-05-18 00:54:40]  mtime=0
[2024-05-18 00:54:40]  protocol_id=None
[2024-05-18 00:54:40]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-18 00:54:40]  replicas=None
[2024-05-18 00:54:40]  scope=mc23_13p6TeV
[2024-05-18 00:54:40]  status=None
[2024-05-18 00:54:40]  status_code=0
[2024-05-18 00:54:40]  storage_token=
[2024-05-18 00:54:40]  surl=/home/boinc/slots/0/PanDA_Pilot-6208377613/log.38920982._003446.job.log.tgz.1
[2024-05-18 00:54:40]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/de/ff/log.38920982._003446.job.log.tgz.1
[2024-05-18 00:54:40]  workdir=None
[2024-05-18 00:54:40] ]
[2024-05-18 00:54:40] 2024-05-18 07:54:09,947 | INFO     | transferring file log.38920982._003446.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6208377613/log.38920982._003446.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-05-18 00:54:40] 2024-05-18 07:54:09,947 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6208377613/log.38920982._003446.job.log.tgz.1 /home/boinc/slots/0/log.38920982._003446.job.log.t
[2024-05-18 00:54:40] 2024-05-18 07:54:09,969 | INFO     | adding to output.list: log.38920982._003446.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/de/ff/log.38920982._003446.job.log.tg
[2024-05-18 00:54:40] 2024-05-18 07:54:09,970 | INFO     | summary of transferred files:
[2024-05-18 00:54:40] 2024-05-18 07:54:09,970 | INFO     |  -- lfn=log.38920982._003446.job.log.tgz.1, status_code=0, status=transferred
[2024-05-18 00:54:40] 2024-05-18 07:54:09,970 | INFO     | stage-out finished correctly
[2024-05-18 00:54:40] 2024-05-18 07:54:12,683 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-18 00:54:40] 2024-05-18 07:54:15,134 | INFO     | job 6208377613 has state=finished
[2024-05-18 00:54:40] 2024-05-18 07:54:15,134 | INFO     | preparing for final server update for job 6208377613 in state='finished'
[2024-05-18 00:54:40] 2024-05-18 07:54:15,766 | WARNING  | process 266538 is no longer using CPU - aborting
[2024-05-18 00:54:40] 2024-05-18 07:54:15,766 | INFO     | will not send any job update
[2024-05-18 00:54:40] 2024-05-18 07:54:16,255 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2024-05-18 00:54:40] 2024-05-18 07:54:16,256 | INFO     | this job has now completed (state=finished)
[2024-05-18 00:54:40] 2024-05-18 07:54:16,256 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-18 00:54:40] 2024-05-18 07:54:16,256 | INFO     | job 6208377613 has finished - writing final server update
[2024-05-18 00:54:40] 2024-05-18 07:54:16,257 | INFO     | total number of processed events: 400 (read)
[2024-05-18 00:54:40] 2024-05-18 07:54:16,264 | INFO     | executing command: lscpu
[2024-05-18 00:54:40] 2024-05-18 07:54:16,327 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-18 00:54:40] 2024-05-18 07:54:16,328 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-18 00:54:40] 2024-05-18 07:54:16,383 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-18 00:54:40] 2024-05-18 07:54:18,269 | INFO     | monitor loop #422: job 0:6208377613 is in state 'finished'
[2024-05-18 00:54:40] 2024-05-18 07:54:18,269 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 00:54:40] 2024-05-18 07:54:19,803 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-18 00:54:40] 2024-05-18 07:54:19,804 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6208377613/memory_monitor_summary.json (trf name=prmon)
[2024-05-18 00:54:40] 2024-05-18 07:54:19,805 | INFO     | extracted standard info from prmon json
[2024-05-18 00:54:40] 2024-05-18 07:54:19,806 | INFO     | extracted standard memory fields from prmon json
[2024-05-18 00:54:40] 2024-05-18 07:54:19,806 | WARNING  | GPU info not found in prmon json
[2024-05-18 00:54:40] 2024-05-18 07:54:19,806 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-18 00:54:40] 2024-05-18 07:54:19,807 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-18 00:54:40] 2024-05-18 07:54:19,810 | INFO     | fitting pss+swap vs Time
[2024-05-18 00:54:40] 2024-05-18 07:54:19,810 | INFO     | model: linear, x: [1716013797.0, 1716013858.0, 1716013919.0, 1716013980.0, 1716014041.0, 1716014102.0, 1716014163.0, 1716014224.0, 1716014285.0, 1716014346.0, 1716
[2024-05-18 00:54:40] 2024-05-18 07:54:19,810 | INFO     | sum of square deviations: 164765880.0
[2024-05-18 00:54:40] 2024-05-18 07:54:19,811 | INFO     | sum of deviations: 17947445620.0
[2024-05-18 00:54:40] 2024-05-18 07:54:19,811 | INFO     | mean x: 1716016237.0
[2024-05-18 00:54:40] 2024-05-18 07:54:19,811 | INFO     | mean y: 2754044.6913580247
[2024-05-18 00:54:40] 2024-05-18 07:54:19,811 | INFO     | -- intersect: -186917669629.15747
[2024-05-18 00:54:40] 2024-05-18 07:54:19,811 | INFO     | intersect: -186917669629.15747
[2024-05-18 00:54:40] 2024-05-18 07:54:19,812 | INFO     | chi2: 2.6331589275420098
[2024-05-18 00:54:40] 2024-05-18 07:54:19,812 | INFO     | -- intersect: -186917669629.15747
[2024-05-18 00:54:40] 2024-05-18 07:54:19,812 | INFO     | current memory leak: 108.93 B/s (using 81 data points, chi2=2.63)
[2024-05-18 00:54:40] 2024-05-18 07:54:19,813 | INFO     | ..............................
[2024-05-18 00:54:40] 2024-05-18 07:54:19,813 | INFO     | . Timing measurements:
[2024-05-18 00:54:40] 2024-05-18 07:54:19,813 | INFO     | . get job = 0 s
[2024-05-18 00:54:40] 2024-05-18 07:54:19,813 | INFO     | . initial setup = 2 s
[2024-05-18 00:54:40] 2024-05-18 07:54:19,813 | INFO     | . payload setup = 4 s
[2024-05-18 00:54:40] 2024-05-18 07:54:19,813 | INFO     | . stage-in = 0 s
[2024-05-18 00:54:40] 2024-05-18 07:54:19,813 | INFO     | . payload execution = 5356 s
[2024-05-18 00:54:40] 2024-05-18 07:54:19,813 | INFO     | . stage-out = 0 s
[2024-05-18 00:54:40] 2024-05-18 07:54:19,814 | INFO     | . log creation = 0 s
[2024-05-18 00:54:40] 2024-05-18 07:54:19,814 | INFO     | ..............................
[2024-05-18 00:54:40] 2024-05-18 07:54:19,905 | INFO     | 
[2024-05-18 00:54:40] 2024-05-18 07:54:19,905 | INFO     | job summary report
[2024-05-18 00:54:40] 2024-05-18 07:54:19,905 | INFO     | --------------------------------------------------
[2024-05-18 00:54:40] 2024-05-18 07:54:19,905 | INFO     | PanDA job id: 6208377613
[2024-05-18 00:54:40] 2024-05-18 07:54:19,905 | INFO     | task id: 38920982
[2024-05-18 00:54:40] 2024-05-18 07:54:19,905 | INFO     | errors: (none)
[2024-05-18 00:54:40] 2024-05-18 07:54:19,905 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-18 00:54:40] 2024-05-18 07:54:19,905 | INFO     | pilot state: finished 
[2024-05-18 00:54:40] 2024-05-18 07:54:19,905 | INFO     | transexitcode: 0
[2024-05-18 00:54:40] 2024-05-18 07:54:19,906 | INFO     | exeerrorcode: 0
[2024-05-18 00:54:40] 2024-05-18 07:54:19,906 | INFO     | exeerrordiag: 
[2024-05-18 00:54:40] 2024-05-18 07:54:19,906 | INFO     | exitcode: 0
[2024-05-18 00:54:40] 2024-05-18 07:54:19,906 | INFO     | exitmsg: OK
[2024-05-18 00:54:40] 2024-05-18 07:54:19,906 | INFO     | cpuconsumptiontime: 53103 s
[2024-05-18 00:54:40] 2024-05-18 07:54:19,906 | INFO     | nevents: 400
[2024-05-18 00:54:40] 2024-05-18 07:54:19,906 | INFO     | neventsw: 0
[2024-05-18 00:54:40] 2024-05-18 07:54:19,906 | INFO     | pid: 266538
[2024-05-18 00:54:40] 2024-05-18 07:54:19,906 | INFO     | pgrp: 266538
[2024-05-18 00:54:40] 2024-05-18 07:54:19,906 | INFO     | corecount: 12
[2024-05-18 00:54:40] 2024-05-18 07:54:19,906 | INFO     | event service: False
[2024-05-18 00:54:40] 2024-05-18 07:54:19,906 | INFO     | sizes: {0: 2392185, 4: 2392391, 11: 2392419, 5365: 2418925, 5366: 2427879, 5369: 2427935, 5376: 2428233}
[2024-05-18 00:54:40] 2024-05-18 07:54:19,906 | INFO     | --------------------------------------------------
[2024-05-18 00:54:40] 2024-05-18 07:54:19,906 | INFO     | 
[2024-05-18 00:54:40] 2024-05-18 07:54:19,906 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-18 00:54:40] 2024-05-18 07:54:19,931 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-18 00:54:40] 2024-05-18 07:54:19,931 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-18 00:54:40] 2024-05-18 07:54:19,931 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-18 00:54:40] 2024-05-18 07:54:19,931 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-18 00:54:40] 2024-05-18 07:54:19,931 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-18 00:54:40] 2024-05-18 07:54:19,932 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-18 00:54:40] 2024-05-18 07:54:19,932 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-18 00:54:40] 2024-05-18 07:54:19,932 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-18 00:54:40] 2024-05-18 07:54:19,932 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-18 00:54:40] 2024-05-18 07:54:19,932 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-18 00:54:40] 2024-05-18 07:54:19,932 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-18 00:54:40] 2024-05-18 07:54:19,932 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-18 00:54:40] 2024-05-18 07:54:19,932 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-18 00:54:40] 2024-05-18 07:54:19,932 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-18 00:54:40] 2024-05-18 07:54:19,932 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-18 00:54:40] 2024-05-18 07:54:19,932 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-18 00:54:40] 2024-05-18 07:54:19,932 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-18 00:54:40] 2024-05-18 07:54:19,932 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-18 00:54:40] 2024-05-18 07:54:19,932 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-18 00:54:40] 2024-05-18 07:54:19,932 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-18 00:54:40] 2024-05-18 07:54:19,933 | INFO     | job 6208377613 has completed (purged errors)
[2024-05-18 00:54:40] 2024-05-18 07:54:19,933 | INFO     | overall cleanup function is called
[2024-05-18 00:54:40] 2024-05-18 07:54:20,939 | INFO     | --- collectZombieJob: --- 10, [266538]
[2024-05-18 00:54:40] 2024-05-18 07:54:20,940 | INFO     | zombie collector waiting for pid 266538
[2024-05-18 00:54:40] 2024-05-18 07:54:20,940 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-18 00:54:40] 2024-05-18 07:54:21,944 | INFO     | collected zombie processes
[2024-05-18 00:54:40] 2024-05-18 07:54:21,944 | INFO     | will now attempt to kill all subprocesses of pid=266538
[2024-05-18 00:54:40] 2024-05-18 07:54:22,092 | INFO     | process IDs to be killed: [266538] (in reverse order)
[2024-05-18 00:54:40] 2024-05-18 07:54:22,165 | WARNING  | found no corresponding commands to process id(s)
[2024-05-18 00:54:40] 2024-05-18 07:54:22,166 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-18 00:54:40] 2024-05-18 07:54:22,177 | INFO     | did not find any defunct processes belonging to 266538
[2024-05-18 00:54:40] 2024-05-18 07:54:22,185 | INFO     | did not find any defunct processes belonging to 266538
[2024-05-18 00:54:40] 2024-05-18 07:54:22,186 | INFO     | ready for new job
[2024-05-18 00:54:40] 2024-05-18 07:54:22,186 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-18 00:54:40] 2024-05-18 07:54:22,189 | INFO     | *************************************
[2024-05-18 00:54:40] 2024-05-18 07:54:22,189 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-18 00:54:40] 2024-05-18 07:54:22,189 | INFO     | *************************************
[2024-05-18 00:54:40] 2024-05-18 07:54:22,189 | INFO     | 
[2024-05-18 00:54:40] 2024-05-18 07:54:22,193 | INFO     | architecture information:
[2024-05-18 00:54:40] 2024-05-18 07:54:22,194 | INFO     | executing command: cat /etc/os-release
[2024-05-18 00:54:40] 2024-05-18 07:54:22,209 | INFO     | cat /etc/os-release:
[2024-05-18 00:54:40] NAME="CentOS Linux"
[2024-05-18 00:54:40] VERSION="7 (Core)"
[2024-05-18 00:54:40] ID="centos"
[2024-05-18 00:54:40] ID_LIKE="rhel fedora"
[2024-05-18 00:54:40] VERSION_ID="7"
[2024-05-18 00:54:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-18 00:54:40] ANSI_COLOR="0;31"
[2024-05-18 00:54:40] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-18 00:54:40] HOME_URL="https://www.centos.org/"
[2024-05-18 00:54:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-18 00:54:40] 
[2024-05-18 00:54:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-18 00:54:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-18 00:54:40] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-18 00:54:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-18 00:54:40] 
[2024-05-18 00:54:40] 2024-05-18 07:54:22,209 | INFO     | *************************************
[2024-05-18 00:54:40] 2024-05-18 07:54:22,713 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-18 00:54:40] 2024-05-18 07:54:22,736 | INFO     | sufficient remaining disk space (2105810092032 B)
[2024-05-18 00:54:40] 2024-05-18 07:54:22,736 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-18 00:54:40] 2024-05-18 07:54:22,736 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-18 00:54:40] 2024-05-18 07:54:22,737 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-18 00:54:40] 2024-05-18 07:54:22,737 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-18 00:54:40] 2024-05-18 07:54:22,737 | INFO     | aborting loop
[2024-05-18 00:54:40] 2024-05-18 07:54:22,738 | INFO     | found 0 job(s) in 20 queues
[2024-05-18 00:54:40] 2024-05-18 07:54:22,738 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-18 00:54:40] 2024-05-18 07:54:22,739 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-18 00:54:40] 2024-05-18 07:54:23,033 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-18 00:54:40] 2024-05-18 07:54:23,041 | INFO     | all payload control threads have been joined
[2024-05-18 00:54:40] 2024-05-18 07:54:23,114 | INFO     | all data control threads have been joined
[2024-05-18 00:54:40] 2024-05-18 07:54:23,268 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-18 00:54:40] 2024-05-18 07:54:23,555 | INFO     | all job control threads have been joined
[2024-05-18 00:54:40] 2024-05-18 07:54:23,742 | INFO     | [job] retrieve thread has finished
[2024-05-18 00:54:40] 2024-05-18 07:54:23,743 | INFO     | [job] job monitor thread has finished
[2024-05-18 00:54:40] 2024-05-18 07:54:24,047 | INFO     | [payload] control thread has finished
[2024-05-18 00:54:40] 2024-05-18 07:54:24,115 | INFO     | [data] control thread has finished
[2024-05-18 00:54:40] 2024-05-18 07:54:24,194 | INFO     | [payload] failed_post thread has finished
[2024-05-18 00:54:40] 2024-05-18 07:54:24,318 | INFO     | [payload] validate_post thread has finished
[2024-05-18 00:54:40] 2024-05-18 07:54:24,561 | INFO     | [job] control thread has finished
[2024-05-18 00:54:40] 2024-05-18 07:54:24,608 | INFO     | [data] copytool_in thread has finished
[2024-05-18 00:54:40] 2024-05-18 07:54:24,690 | INFO     | [job] create_data_payload thread has finished
[2024-05-18 00:54:40] 2024-05-18 07:54:24,827 | INFO     | [payload] execute_payloads thread has finished
[2024-05-18 00:54:40] 2024-05-18 07:54:24,915 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-18 00:54:40] 2024-05-18 07:54:25,028 | INFO     | [job] validate thread has finished
[2024-05-18 00:54:40] 2024-05-18 07:54:25,039 | INFO     | [data] copytool_out thread has finished
[2024-05-18 00:54:40] 2024-05-18 07:54:25,188 | INFO     | [payload] validate_pre thread has finished
[2024-05-18 00:54:40] 2024-05-18 07:54:25,921 | INFO     | [job] queue monitor thread has finished
[2024-05-18 00:54:40] 2024-05-18 07:54:27,274 | INFO     | [data] queue_monitor thread has finished
[2024-05-18 00:54:40] 2024-05-18 07:54:32,979 | INFO     | job.realtimelogging is not enabled
[2024-05-18 00:54:40] 2024-05-18 07:54:33,984 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-18 00:54:40] 2024-05-18 07:54:34,410 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140105307850560)>', '<ExcThread(monitor, started 140105029240576)>']
[2024-05-18 00:54:40] 2024-05-18 07:54:34,810 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-18 00:54:40] 2024-05-18 07:54:34,810 | INFO     | [monitor] control thread has ended
[2024-05-18 00:54:40] 2024-05-18 07:54:39,432 | INFO     | all workflow threads have been joined
[2024-05-18 00:54:40] 2024-05-18 07:54:39,432 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-18 00:54:40] 2024-05-18 07:54:39,433 | INFO     | traces error code: 0
[2024-05-18 00:54:40] 2024-05-18 07:54:39,433 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-18 00:54:40] 2024-05-18 07:54:39,506 [wrapper] ==== pilot stdout END ====
[2024-05-18 00:54:40] 2024-05-18 07:54:39,510 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-18 00:54:40] 2024-05-18 07:54:39,514 [wrapper] pilotpid: 260039
[2024-05-18 00:54:40] 2024-05-18 07:54:39,518 [wrapper] Pilot exit status: 0
[2024-05-18 00:54:40] 2024-05-18 07:54:39,527 [wrapper] pandaids: 6208377613
[2024-05-18 00:54:40] 2024-05-18 07:54:39,602 [wrapper] cleanup: SIGTERM to supervisor_pilot   4625 260040
[2024-05-18 00:54:40] 2024-05-18 07:54:39,605 [wrapper] Test setup, not cleaning
[2024-05-18 00:54:40] 2024-05-18 07:54:39,607 [wrapper] ==== wrapper stdout END ====
[2024-05-18 00:54:40] 2024-05-18 07:54:39,609 [wrapper] ==== wrapper stderr END ====
[2024-05-18 00:54:40] 2024-05-18 07:54:39,613 [wrapper] apfmon messages muted
[2024-05-18 00:54:40]  *** Error codes and diagnostics ***
[2024-05-18 00:54:40]     "exeErrorCode": 0,
[2024-05-18 00:54:40]     "exeErrorDiag": "",
[2024-05-18 00:54:40]     "pilotErrorCode": 0,
[2024-05-18 00:54:40]     "pilotErrorDiag": "",
[2024-05-18 00:54:40]  *** Listing of results directory ***
[2024-05-18 00:54:40] total 927240
[2024-05-18 00:54:40] -rw-r--r-- 1 boinc boinc    467845 May 17 16:48 pilot3.tar.gz
[2024-05-18 00:54:40] -rwx------ 1 boinc boinc     32251 May 17 16:49 runpilot2-wrapper.sh
[2024-05-18 00:54:40] -rw-r--r-- 1 boinc boinc      5633 May 17 16:49 queuedata.json
[2024-05-18 00:54:40] -rw-r--r-- 1 boinc boinc       100 May 17 23:24 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-18 00:54:40] -rwxr-xr-x 1 boinc boinc      7986 May 17 23:24 run_atlas
[2024-05-18 00:54:40] -rw-r--r-- 1 boinc boinc       105 May 17 23:24 job.xml
[2024-05-18 00:54:40] -rw-r--r-- 1 boinc boinc      6626 May 17 23:24 init_data.xml
[2024-05-18 00:54:40] -rw-r--r-- 2 boinc boinc 632150938 May 17 23:24 EVNT.38776160._000133.pool.root.1
[2024-05-18 00:54:40] -rw-r--r-- 2 boinc boinc     17537 May 17 23:24 start_atlas.sh
[2024-05-18 00:54:40] drwxrwx--x 2 boinc boinc      4096 May 17 23:24 shared
[2024-05-18 00:54:40] -rw-r--r-- 2 boinc boinc    480001 May 17 23:24 input.tar.gz
[2024-05-18 00:54:40] -rw-r--r-- 1 boinc boinc         0 May 17 23:24 boinc_lockfile
[2024-05-18 00:54:40] -rw-r--r-- 1 boinc boinc      2627 May 17 23:24 pandaJob.out
[2024-05-18 00:54:40] -rw------- 1 boinc boinc       424 May 17 23:24 setup.sh.local
[2024-05-18 00:54:40] -rw------- 1 boinc boinc   1019065 May 17 23:24 agis_schedconf.cvmfs.json
[2024-05-18 00:54:40] -rw------- 1 boinc boinc         0 May 17 23:24 agis_ddmendpoints.agis.ALL.json
[2024-05-18 00:54:40] -rw------- 1 boinc boinc   1324701 May 17 23:24 cric_ddmendpoints.json
[2024-05-18 00:54:40] drwx------ 4 boinc boinc      4096 May 17 23:24 pilot3
[2024-05-18 00:54:40] -rw------- 1 boinc boinc 311988211 May 18 00:53 HITS.38920982._003446.pool.root.1
[2024-05-18 00:54:40] -rw------- 1 boinc boinc        95 May 18 00:53 pilot_heartbeat.json
[2024-05-18 00:54:40] -rw-r--r-- 1 boinc boinc       530 May 18 00:53 boinc_task_state.xml
[2024-05-18 00:54:40] -rw------- 1 boinc boinc      1053 May 18 00:54 memory_monitor_summary.json
[2024-05-18 00:54:40] -rw------- 1 boinc boinc    383527 May 18 00:54 log.38920982._003446.job.log.tgz.1
[2024-05-18 00:54:40] -rw------- 1 boinc boinc      7768 May 18 00:54 heartbeat.json
[2024-05-18 00:54:40] -rw-r--r-- 1 boinc boinc      8192 May 18 00:54 boinc_mmap_file
[2024-05-18 00:54:40] -rw-r--r-- 1 boinc boinc        27 May 18 00:54 wrapper_checkpoint.txt
[2024-05-18 00:54:40] -rw------- 1 boinc boinc      4405 May 18 00:54 pilotlog.txt
[2024-05-18 00:54:40] -rw------- 1 boinc boinc    524611 May 18 00:54 log.38920982._003446.job.log.1
[2024-05-18 00:54:40] -rw------- 1 boinc boinc       357 May 18 00:54 output.list
[2024-05-18 00:54:40] -rw-r--r-- 1 boinc boinc       620 May 18 00:54 runtime_log
[2024-05-18 00:54:40] -rw------- 1 boinc boinc    931840 May 18 00:54 result.tar.gz
[2024-05-18 00:54:40] -rw------- 1 boinc boinc       652 May 18 00:54 Xi2NDmZVMS5nsSi4apGgGQJmABFKDmABFKDm4ySLDmviRKDmDggOnn.diag
[2024-05-18 00:54:40] -rw-r--r-- 1 boinc boinc     11286 May 18 00:54 runtime_log.err
[2024-05-18 00:54:40] -rw-r--r-- 1 boinc boinc     21556 May 18 00:54 stderr.txt
[2024-05-18 00:54:40] HITS file was successfully produced:
[2024-05-18 00:54:40] -rw------- 1 boinc boinc 311988211 May 18 00:53 shared/HITS.pool.root.1
[2024-05-18 00:54:40]  *** Contents of shared directory: ***
[2024-05-18 00:54:40] total 923424
[2024-05-18 00:54:40] -rw-r--r-- 2 boinc boinc 632150938 May 17 23:24 ATLAS.root_0
[2024-05-18 00:54:40] -rw-r--r-- 2 boinc boinc     17537 May 17 23:24 start_atlas.sh
[2024-05-18 00:54:40] -rw-r--r-- 2 boinc boinc    480001 May 17 23:24 input.tar.gz
[2024-05-18 00:54:40] -rw------- 1 boinc boinc 311988211 May 18 00:53 HITS.pool.root.1
[2024-05-18 00:54:40] -rw------- 1 boinc boinc    931840 May 18 00:54 result.tar.gz
00:54:41 (255781): run_atlas exited; CPU time 52947.161983
00:54:41 (255781): called boinc_finish(0)

</stderr_txt>
]]>

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