Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
08:00:53 (78879): wrapper (7.7.26015): starting
08:00:53 (78879): wrapper: running run_atlas (--nthreads 12)
[2024-05-18 08:00:53] Arguments: --nthreads 12
[2024-05-18 08:00:53] Threads: 12
[2024-05-18 08:00:53] Checking for CVMFS
[2024-05-18 08:00:53] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-18 08:00:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-18 08:00:53] Running cvmfs_config stat atlas.cern.ch
[2024-05-18 08:00:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-18 08:00:54] 2.10.1.0 2796 173813 178732 132882 2 277 32181488 45568001 12346 130560 0 1122742614 99.767 677374872 15185 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2024-05-18 08:00:54] CVMFS is ok
[2024-05-18 08:00:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-18 08:00:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-18 08:00:54] Further information can be found at the LHC@home message board.
[2024-05-18 08:00:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-18 08:00:54] Checking for apptainer binary...
[2024-05-18 08:00:54] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-18 08:00:54] Running /usr/bin/apptainer --version
[2024-05-18 08:00:54] apptainer version 1.1.8-1.el7
[2024-05-18 08:00:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-18 08:00:55] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0078.triumf.lcg
[2024-05-18 08:00:55] apptainer works
[2024-05-18 08:00:55] Set ATHENA_PROC_NUMBER=12
[2024-05-18 08:00:55] Set ATHENA_CORE_NUMBER=12
[2024-05-18 08:00:55] Starting ATLAS job with PandaID=6208377581
[2024-05-18 08:00:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-18 08:59:46]  *** The last 200 lines of the pilot log: ***
[2024-05-18 08:59:46]  filetype=log
[2024-05-18 08:59:46]  guid=5f46b2d6-7474-4ce7-9644-93b5d4f6ba07
[2024-05-18 08:59:46]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-18 08:59:46]  is_tar=False
[2024-05-18 08:59:46]  lfn=log.38776125._015565.job.log.tgz.1
[2024-05-18 08:59:46]  mtime=0
[2024-05-18 08:59:46]  protocol_id=None
[2024-05-18 08:59:46]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-18 08:59:46]  replicas=None
[2024-05-18 08:59:46]  scope=mc23_13p6TeV
[2024-05-18 08:59:46]  status=None
[2024-05-18 08:59:46]  status_code=0
[2024-05-18 08:59:46]  storage_token=
[2024-05-18 08:59:46]  surl=/home/boinc/slots/0/PanDA_Pilot-6208377581/log.38776125._015565.job.log.tgz.1
[2024-05-18 08:59:46]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ec/77/log.38776125._015565.job.log.tgz.1
[2024-05-18 08:59:46]  workdir=None
[2024-05-18 08:59:46] ]
[2024-05-18 08:59:46] 2024-05-18 15:59:16,413 | INFO     | transferring file log.38776125._015565.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6208377581/log.38776125._015565.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-05-18 08:59:46] 2024-05-18 15:59:16,413 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6208377581/log.38776125._015565.job.log.tgz.1 /home/boinc/slots/0/log.38776125._015565.job.log.t
[2024-05-18 08:59:46] 2024-05-18 15:59:16,441 | INFO     | adding to output.list: log.38776125._015565.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ec/77/log.38776125._015565.job.log.tg
[2024-05-18 08:59:46] 2024-05-18 15:59:16,441 | INFO     | summary of transferred files:
[2024-05-18 08:59:46] 2024-05-18 15:59:16,441 | INFO     |  -- lfn=log.38776125._015565.job.log.tgz.1, status_code=0, status=transferred
[2024-05-18 08:59:46] 2024-05-18 15:59:16,442 | INFO     | stage-out finished correctly
[2024-05-18 08:59:46] 2024-05-18 15:59:16,641 | INFO     | 3493s have passed since pilot start
[2024-05-18 08:59:46] 2024-05-18 15:59:17,351 | WARNING  | process 91581 is no longer using CPU - aborting
[2024-05-18 08:59:46] 2024-05-18 15:59:17,351 | INFO     | will not send any job update
[2024-05-18 08:59:46] 2024-05-18 15:59:17,867 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-18 08:59:46] 2024-05-18 15:59:19,856 | INFO     | monitor loop #274: job 0:6208377581 is in state 'finished'
[2024-05-18 08:59:46] 2024-05-18 15:59:19,856 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 08:59:46] 2024-05-18 15:59:20,554 | INFO     | job 6208377581 has state=finished
[2024-05-18 08:59:46] 2024-05-18 15:59:20,554 | INFO     | preparing for final server update for job 6208377581 in state='finished'
[2024-05-18 08:59:46] 2024-05-18 15:59:20,554 | INFO     | this job has now completed (state=finished)
[2024-05-18 08:59:46] 2024-05-18 15:59:20,554 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-18 08:59:46] 2024-05-18 15:59:20,555 | INFO     | job 6208377581 has finished - writing final server update
[2024-05-18 08:59:46] 2024-05-18 15:59:20,555 | INFO     | total number of processed events: 400 (read)
[2024-05-18 08:59:46] 2024-05-18 15:59:20,558 | INFO     | executing command: lscpu
[2024-05-18 08:59:46] 2024-05-18 15:59:20,628 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-18 08:59:46] 2024-05-18 15:59:20,628 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-18 08:59:46] 2024-05-18 15:59:20,686 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-18 08:59:46] 2024-05-18 15:59:22,360 | INFO     | monitor loop #275: job 0:6208377581 is in state 'finished'
[2024-05-18 08:59:46] 2024-05-18 15:59:22,361 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 08:59:46] 2024-05-18 15:59:24,563 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-18 08:59:46] 2024-05-18 15:59:24,563 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6208377581/memory_monitor_summary.json (trf name=prmon)
[2024-05-18 08:59:46] 2024-05-18 15:59:24,564 | INFO     | extracted standard info from prmon json
[2024-05-18 08:59:46] 2024-05-18 15:59:24,564 | INFO     | extracted standard memory fields from prmon json
[2024-05-18 08:59:46] 2024-05-18 15:59:24,564 | WARNING  | GPU info not found in prmon json
[2024-05-18 08:59:46] 2024-05-18 15:59:24,565 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-18 08:59:46] 2024-05-18 15:59:24,565 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-18 08:59:46] 2024-05-18 15:59:24,566 | INFO     | fitting pss+swap vs Time
[2024-05-18 08:59:46] 2024-05-18 15:59:24,566 | INFO     | model: linear, x: [1716044794.0, 1716044855.0, 1716044916.0, 1716044977.0, 1716045038.0, 1716045099.0, 1716045160.0, 1716045221.0, 1716045282.0, 1716045343.0, 1716
[2024-05-18 08:59:46] 2024-05-18 15:59:24,566 | INFO     | sum of square deviations: 38744912.5
[2024-05-18 08:59:46] 2024-05-18 15:59:24,566 | INFO     | sum of deviations: 15495723219.5
[2024-05-18 08:59:46] 2024-05-18 15:59:24,566 | INFO     | mean x: 1716046288.5
[2024-05-18 08:59:46] 2024-05-18 15:59:24,566 | INFO     | mean y: 2498508.34
[2024-05-18 08:59:46] 2024-05-18 15:59:24,566 | INFO     | -- intersect: -686316726459.4863
[2024-05-18 08:59:46] 2024-05-18 15:59:24,566 | INFO     | intersect: -686316726459.4863
[2024-05-18 08:59:46] 2024-05-18 15:59:24,566 | INFO     | chi2: 1.5667375963742969
[2024-05-18 08:59:46] 2024-05-18 15:59:24,566 | INFO     | -- intersect: -686316726459.4863
[2024-05-18 08:59:46] 2024-05-18 15:59:24,566 | INFO     | current memory leak: 399.94 B/s (using 50 data points, chi2=1.57)
[2024-05-18 08:59:46] 2024-05-18 15:59:24,567 | INFO     | ..............................
[2024-05-18 08:59:46] 2024-05-18 15:59:24,567 | INFO     | . Timing measurements:
[2024-05-18 08:59:46] 2024-05-18 15:59:24,567 | INFO     | . get job = 0 s
[2024-05-18 08:59:46] 2024-05-18 15:59:24,567 | INFO     | . initial setup = 2 s
[2024-05-18 08:59:46] 2024-05-18 15:59:24,567 | INFO     | . payload setup = 5 s
[2024-05-18 08:59:46] 2024-05-18 15:59:24,567 | INFO     | . stage-in = 0 s
[2024-05-18 08:59:46] 2024-05-18 15:59:24,567 | INFO     | . payload execution = 3464 s
[2024-05-18 08:59:46] 2024-05-18 15:59:24,567 | INFO     | . stage-out = 0 s
[2024-05-18 08:59:46] 2024-05-18 15:59:24,567 | INFO     | . log creation = 0 s
[2024-05-18 08:59:46] 2024-05-18 15:59:24,567 | INFO     | ..............................
[2024-05-18 08:59:46] 2024-05-18 15:59:24,617 | INFO     | 
[2024-05-18 08:59:46] 2024-05-18 15:59:24,618 | INFO     | job summary report
[2024-05-18 08:59:46] 2024-05-18 15:59:24,618 | INFO     | --------------------------------------------------
[2024-05-18 08:59:46] 2024-05-18 15:59:24,618 | INFO     | PanDA job id: 6208377581
[2024-05-18 08:59:46] 2024-05-18 15:59:24,618 | INFO     | task id: 38776125
[2024-05-18 08:59:46] 2024-05-18 15:59:24,618 | INFO     | errors: (none)
[2024-05-18 08:59:46] 2024-05-18 15:59:24,618 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-18 08:59:46] 2024-05-18 15:59:24,618 | INFO     | pilot state: finished 
[2024-05-18 08:59:46] 2024-05-18 15:59:24,618 | INFO     | transexitcode: 0
[2024-05-18 08:59:46] 2024-05-18 15:59:24,618 | INFO     | exeerrorcode: 0
[2024-05-18 08:59:46] 2024-05-18 15:59:24,618 | INFO     | exeerrordiag: 
[2024-05-18 08:59:46] 2024-05-18 15:59:24,618 | INFO     | exitcode: 0
[2024-05-18 08:59:46] 2024-05-18 15:59:24,618 | INFO     | exitmsg: OK
[2024-05-18 08:59:46] 2024-05-18 15:59:24,618 | INFO     | cpuconsumptiontime: 30522 s
[2024-05-18 08:59:46] 2024-05-18 15:59:24,618 | INFO     | nevents: 400
[2024-05-18 08:59:46] 2024-05-18 15:59:24,618 | INFO     | neventsw: 0
[2024-05-18 08:59:46] 2024-05-18 15:59:24,618 | INFO     | pid: 91581
[2024-05-18 08:59:46] 2024-05-18 15:59:24,618 | INFO     | pgrp: 91581
[2024-05-18 08:59:46] 2024-05-18 15:59:24,619 | INFO     | corecount: 12
[2024-05-18 08:59:46] 2024-05-18 15:59:24,619 | INFO     | event service: False
[2024-05-18 08:59:46] 2024-05-18 15:59:24,619 | INFO     | sizes: {0: 2391288, 1: 2392223, 5: 2392429, 11: 2392485, 3473: 2418096, 3476: 2427050, 3477: 2427234, 3484: 2427404}
[2024-05-18 08:59:46] 2024-05-18 15:59:24,619 | INFO     | --------------------------------------------------
[2024-05-18 08:59:46] 2024-05-18 15:59:24,619 | INFO     | 
[2024-05-18 08:59:46] 2024-05-18 15:59:24,619 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-18 08:59:46] 2024-05-18 15:59:24,645 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-18 08:59:46] 2024-05-18 15:59:24,646 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-18 08:59:46] 2024-05-18 15:59:24,646 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-18 08:59:46] 2024-05-18 15:59:24,646 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-18 08:59:46] 2024-05-18 15:59:24,646 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-18 08:59:46] 2024-05-18 15:59:24,646 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-18 08:59:46] 2024-05-18 15:59:24,646 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-18 08:59:46] 2024-05-18 15:59:24,646 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-18 08:59:46] 2024-05-18 15:59:24,646 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-18 08:59:46] 2024-05-18 15:59:24,646 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-18 08:59:46] 2024-05-18 15:59:24,646 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-18 08:59:46] 2024-05-18 15:59:24,646 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-18 08:59:46] 2024-05-18 15:59:24,646 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-18 08:59:46] 2024-05-18 15:59:24,646 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-18 08:59:46] 2024-05-18 15:59:24,646 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-18 08:59:46] 2024-05-18 15:59:24,646 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-18 08:59:46] 2024-05-18 15:59:24,646 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-18 08:59:46] 2024-05-18 15:59:24,646 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-18 08:59:46] 2024-05-18 15:59:24,646 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-18 08:59:46] 2024-05-18 15:59:24,647 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-18 08:59:46] 2024-05-18 15:59:24,647 | INFO     | job 6208377581 has completed (purged errors)
[2024-05-18 08:59:46] 2024-05-18 15:59:24,647 | INFO     | overall cleanup function is called
[2024-05-18 08:59:46] 2024-05-18 15:59:25,652 | INFO     | --- collectZombieJob: --- 10, [91581]
[2024-05-18 08:59:46] 2024-05-18 15:59:25,652 | INFO     | zombie collector waiting for pid 91581
[2024-05-18 08:59:46] 2024-05-18 15:59:25,653 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-18 08:59:46] 2024-05-18 15:59:26,658 | INFO     | collected zombie processes
[2024-05-18 08:59:46] 2024-05-18 15:59:26,658 | INFO     | will now attempt to kill all subprocesses of pid=91581
[2024-05-18 08:59:46] 2024-05-18 15:59:26,841 | INFO     | process IDs to be killed: [91581] (in reverse order)
[2024-05-18 08:59:46] 2024-05-18 15:59:26,987 | WARNING  | found no corresponding commands to process id(s)
[2024-05-18 08:59:46] 2024-05-18 15:59:26,988 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-18 08:59:46] 2024-05-18 15:59:26,999 | INFO     | did not find any defunct processes belonging to 91581
[2024-05-18 08:59:46] 2024-05-18 15:59:27,009 | INFO     | did not find any defunct processes belonging to 91581
[2024-05-18 08:59:46] 2024-05-18 15:59:27,009 | INFO     | ready for new job
[2024-05-18 08:59:46] 2024-05-18 15:59:27,009 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-18 08:59:46] 2024-05-18 15:59:27,011 | INFO     | *************************************
[2024-05-18 08:59:46] 2024-05-18 15:59:27,011 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-18 08:59:46] 2024-05-18 15:59:27,012 | INFO     | *************************************
[2024-05-18 08:59:46] 2024-05-18 15:59:27,012 | INFO     | 
[2024-05-18 08:59:46] 2024-05-18 15:59:27,016 | INFO     | architecture information:
[2024-05-18 08:59:46] 2024-05-18 15:59:27,017 | INFO     | executing command: cat /etc/os-release
[2024-05-18 08:59:46] 2024-05-18 15:59:27,035 | INFO     | cat /etc/os-release:
[2024-05-18 08:59:46] NAME="CentOS Linux"
[2024-05-18 08:59:46] VERSION="7 (Core)"
[2024-05-18 08:59:46] ID="centos"
[2024-05-18 08:59:46] ID_LIKE="rhel fedora"
[2024-05-18 08:59:46] VERSION_ID="7"
[2024-05-18 08:59:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-18 08:59:46] ANSI_COLOR="0;31"
[2024-05-18 08:59:46] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-18 08:59:46] HOME_URL="https://www.centos.org/"
[2024-05-18 08:59:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-18 08:59:46] 
[2024-05-18 08:59:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-18 08:59:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-18 08:59:46] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-18 08:59:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-18 08:59:46] 
[2024-05-18 08:59:46] 2024-05-18 15:59:27,036 | INFO     | *************************************
[2024-05-18 08:59:46] 2024-05-18 15:59:27,538 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-18 08:59:46] 2024-05-18 15:59:27,564 | INFO     | sufficient remaining disk space (2103685677056 B)
[2024-05-18 08:59:46] 2024-05-18 15:59:27,564 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-18 08:59:46] 2024-05-18 15:59:27,565 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-18 08:59:46] 2024-05-18 15:59:27,565 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-18 08:59:46] 2024-05-18 15:59:27,678 | INFO     | found 0 job(s) in 20 queues
[2024-05-18 08:59:46] 2024-05-18 15:59:27,678 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-18 08:59:46] 2024-05-18 15:59:27,678 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-18 08:59:46] 2024-05-18 15:59:28,379 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-18 08:59:46] 2024-05-18 15:59:28,380 | INFO     | aborting loop
[2024-05-18 08:59:46] 2024-05-18 15:59:28,402 | INFO     | all job control threads have been joined
[2024-05-18 08:59:46] 2024-05-18 15:59:28,474 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-18 08:59:46] 2024-05-18 15:59:28,476 | INFO     | all data control threads have been joined
[2024-05-18 08:59:46] 2024-05-18 15:59:28,571 | INFO     | [job] retrieve thread has finished
[2024-05-18 08:59:46] 2024-05-18 15:59:28,979 | INFO     | all payload control threads have been joined
[2024-05-18 08:59:46] 2024-05-18 15:59:29,018 | INFO     | [data] copytool_in thread has finished
[2024-05-18 08:59:46] 2024-05-18 15:59:29,039 | INFO     | [payload] failed_post thread has finished
[2024-05-18 08:59:46] 2024-05-18 15:59:29,045 | INFO     | [job] create_data_payload thread has finished
[2024-05-18 08:59:46] 2024-05-18 15:59:29,353 | INFO     | [job] validate thread has finished
[2024-05-18 08:59:46] 2024-05-18 15:59:29,385 | INFO     | [job] job monitor thread has finished
[2024-05-18 08:59:46] 2024-05-18 15:59:29,409 | INFO     | [job] control thread has finished
[2024-05-18 08:59:46] 2024-05-18 15:59:29,482 | INFO     | [data] control thread has finished
[2024-05-18 08:59:46] 2024-05-18 15:59:29,573 | INFO     | [data] copytool_out thread has finished
[2024-05-18 08:59:46] 2024-05-18 15:59:29,626 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-18 08:59:46] 2024-05-18 15:59:29,661 | INFO     | [payload] validate_post thread has finished
[2024-05-18 08:59:46] 2024-05-18 15:59:29,692 | INFO     | [payload] validate_pre thread has finished
[2024-05-18 08:59:46] 2024-05-18 15:59:29,860 | INFO     | [payload] execute_payloads thread has finished
[2024-05-18 08:59:46] 2024-05-18 15:59:29,984 | INFO     | [payload] control thread has finished
[2024-05-18 08:59:46] 2024-05-18 15:59:30,631 | INFO     | [job] queue monitor thread has finished
[2024-05-18 08:59:46] 2024-05-18 15:59:32,483 | INFO     | [data] queue_monitor thread has finished
[2024-05-18 08:59:46] 2024-05-18 15:59:37,674 | INFO     | job.realtimelogging is not enabled
[2024-05-18 08:59:46] 2024-05-18 15:59:38,679 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-18 08:59:46] 2024-05-18 15:59:40,351 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139862957193024)>', '<ExcThread(monitor, started 139862682347264)>']
[2024-05-18 08:59:46] 2024-05-18 15:59:40,745 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-18 08:59:46] 2024-05-18 15:59:40,746 | INFO     | [monitor] control thread has ended
[2024-05-18 08:59:46] 2024-05-18 15:59:45,377 | INFO     | all workflow threads have been joined
[2024-05-18 08:59:46] 2024-05-18 15:59:45,377 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-18 08:59:46] 2024-05-18 15:59:45,378 | INFO     | traces error code: 0
[2024-05-18 08:59:46] 2024-05-18 15:59:45,379 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-18 08:59:46] 2024-05-18 15:59:45,505 [wrapper] ==== pilot stdout END ====
[2024-05-18 08:59:46] 2024-05-18 15:59:45,510 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-18 08:59:46] 2024-05-18 15:59:45,514 [wrapper] pilotpid: 83098
[2024-05-18 08:59:46] 2024-05-18 15:59:45,518 [wrapper] Pilot exit status: 0
[2024-05-18 08:59:46] 2024-05-18 15:59:45,531 [wrapper] pandaids: 6208377581
[2024-05-18 08:59:46] 2024-05-18 15:59:45,621 [wrapper] cleanup: SIGTERM to supervisor_pilot 276975 83099
[2024-05-18 08:59:46] 2024-05-18 15:59:45,625 [wrapper] Test setup, not cleaning
[2024-05-18 08:59:46] 2024-05-18 15:59:45,629 [wrapper] ==== wrapper stdout END ====
[2024-05-18 08:59:46] 2024-05-18 15:59:45,633 [wrapper] ==== wrapper stderr END ====
[2024-05-18 08:59:46] 2024-05-18 15:59:45,640 [wrapper] apfmon messages muted
[2024-05-18 08:59:46]  *** Error codes and diagnostics ***
[2024-05-18 08:59:46]     "exeErrorCode": 0,
[2024-05-18 08:59:46]     "exeErrorDiag": "",
[2024-05-18 08:59:46]     "pilotErrorCode": 0,
[2024-05-18 08:59:46]     "pilotErrorDiag": "",
[2024-05-18 08:59:46]  *** Listing of results directory ***
[2024-05-18 08:59:46] total 834648
[2024-05-18 08:59:46] -rw-r--r-- 1 boinc boinc    467845 May 17 16:38 pilot3.tar.gz
[2024-05-18 08:59:46] -rwx------ 1 boinc boinc     32251 May 17 16:46 runpilot2-wrapper.sh
[2024-05-18 08:59:46] -rw-r--r-- 1 boinc boinc      5633 May 17 16:46 queuedata.json
[2024-05-18 08:59:46] -rw-r--r-- 1 boinc boinc       100 May 18 08:00 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-18 08:59:46] -rwxr-xr-x 1 boinc boinc      7986 May 18 08:00 run_atlas
[2024-05-18 08:59:46] -rw-r--r-- 1 boinc boinc       105 May 18 08:00 job.xml
[2024-05-18 08:59:46] -rw-r--r-- 2 boinc boinc 604721463 May 18 08:00 EVNT.38776119._000442.pool.root.1
[2024-05-18 08:59:46] -rw-r--r-- 1 boinc boinc      6626 May 18 08:00 init_data.xml
[2024-05-18 08:59:46] drwxrwx--x 2 boinc boinc      4096 May 18 08:00 shared
[2024-05-18 08:59:46] -rw-r--r-- 2 boinc boinc    480002 May 18 08:00 input.tar.gz
[2024-05-18 08:59:46] -rw-r--r-- 2 boinc boinc     17537 May 18 08:00 start_atlas.sh
[2024-05-18 08:59:46] -rw-r--r-- 1 boinc boinc         0 May 18 08:00 boinc_lockfile
[2024-05-18 08:59:46] -rw-r--r-- 1 boinc boinc      2635 May 18 08:00 pandaJob.out
[2024-05-18 08:59:46] -rw------- 1 boinc boinc       424 May 18 08:00 setup.sh.local
[2024-05-18 08:59:46] -rw------- 1 boinc boinc   1019426 May 18 08:01 agis_schedconf.cvmfs.json
[2024-05-18 08:59:46] -rw------- 1 boinc boinc         0 May 18 08:01 agis_ddmendpoints.agis.ALL.json
[2024-05-18 08:59:46] -rw------- 1 boinc boinc   1324701 May 18 08:01 cric_ddmendpoints.json
[2024-05-18 08:59:46] drwx------ 4 boinc boinc      4096 May 18 08:01 pilot3
[2024-05-18 08:59:46] -rw------- 1 boinc boinc 245007417 May 18 08:58 HITS.38776125._015565.pool.root.1
[2024-05-18 08:59:46] -rw------- 1 boinc boinc      1051 May 18 08:59 memory_monitor_summary.json
[2024-05-18 08:59:46] -rw------- 1 boinc boinc        95 May 18 08:59 pilot_heartbeat.json
[2024-05-18 08:59:46] -rw------- 1 boinc boinc    351357 May 18 08:59 log.38776125._015565.job.log.tgz.1
[2024-05-18 08:59:46] -rw-r--r-- 1 boinc boinc        27 May 18 08:59 wrapper_checkpoint.txt
[2024-05-18 08:59:46] -rw-r--r-- 1 boinc boinc      8192 May 18 08:59 boinc_mmap_file
[2024-05-18 08:59:46] -rw-r--r-- 1 boinc boinc       530 May 18 08:59 boinc_task_state.xml
[2024-05-18 08:59:46] -rw------- 1 boinc boinc      7769 May 18 08:59 heartbeat.json
[2024-05-18 08:59:46] -rw------- 1 boinc boinc      4282 May 18 08:59 pilotlog.txt
[2024-05-18 08:59:46] -rw------- 1 boinc boinc    356029 May 18 08:59 log.38776125._015565.job.log.1
[2024-05-18 08:59:46] -rw------- 1 boinc boinc       357 May 18 08:59 output.list
[2024-05-18 08:59:46] -rw-r--r-- 1 boinc boinc       620 May 18 08:59 runtime_log
[2024-05-18 08:59:46] -rw------- 1 boinc boinc    727040 May 18 08:59 result.tar.gz
[2024-05-18 08:59:46] -rw------- 1 boinc boinc       651 May 18 08:59 TpwLDmSSMS5nsSi4apGgGQJmABFKDmABFKDm4ySLDmCiRKDmev3UUn.diag
[2024-05-18 08:59:46] -rw-r--r-- 1 boinc boinc     11286 May 18 08:59 runtime_log.err
[2024-05-18 08:59:46] -rw-r--r-- 1 boinc boinc     21594 May 18 08:59 stderr.txt
[2024-05-18 08:59:46] HITS file was successfully produced:
[2024-05-18 08:59:46] -rw------- 1 boinc boinc 245007417 May 18 08:58 shared/HITS.pool.root.1
[2024-05-18 08:59:46]  *** Contents of shared directory: ***
[2024-05-18 08:59:46] total 831032
[2024-05-18 08:59:46] -rw-r--r-- 2 boinc boinc 604721463 May 18 08:00 ATLAS.root_0
[2024-05-18 08:59:46] -rw-r--r-- 2 boinc boinc    480002 May 18 08:00 input.tar.gz
[2024-05-18 08:59:46] -rw-r--r-- 2 boinc boinc     17537 May 18 08:00 start_atlas.sh
[2024-05-18 08:59:46] -rw------- 1 boinc boinc 245007417 May 18 08:58 HITS.pool.root.1
[2024-05-18 08:59:46] -rw------- 1 boinc boinc    727040 May 18 08:59 result.tar.gz
08:59:47 (78879): run_atlas exited; CPU time 30427.853396
08:59:47 (78879): called boinc_finish(0)

</stderr_txt>
]]>

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