Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:33:17 (1168509): wrapper (7.7.26015): starting
01:33:17 (1168509): wrapper: running run_atlas (--nthreads 12)
[2024-05-19 01:33:17] Arguments: --nthreads 12
[2024-05-19 01:33:17] Threads: 12
[2024-05-19 01:33:17] Checking for CVMFS
[2024-05-19 01:33:17] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-19 01:33:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-19 01:33:17] Running cvmfs_config stat atlas.cern.ch
[2024-05-19 01:33:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-19 01:33:17] 2.11.2.0 114863 4035 84408 132902 1 66 3476400 4096000 0 65024 1 3842973 99.871 908753 1292 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch DIRECT 1
[2024-05-19 01:33:17] CVMFS is ok
[2024-05-19 01:33:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-19 01:33:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-19 01:33:17] Small home clusters do not require a local http proxy but it is suggested if
[2024-05-19 01:33:17] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2024-05-19 01:33:17] Further information can be found at the LHC@home message board.
[2024-05-19 01:33:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-19 01:33:17] Checking for apptainer binary...
[2024-05-19 01:33:17] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-19 01:33:17] Running /usr/bin/apptainer --version
[2024-05-19 01:33:17] /usr/bin/apptainer: symbol lookup error: /usr/bin/apptainer: undefined symbol: seccomp_notify_respond
[2024-05-19 01:33:17] apptainer seems to be installed but not working
[2024-05-19 01:33:17] Will use version from CVMFS
[2024-05-19 01:33:17] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-19 01:33:18] sarnet8.local
[2024-05-19 01:33:18] apptainer works
[2024-05-19 01:33:18] Set ATHENA_PROC_NUMBER=12
[2024-05-19 01:33:18] Set ATHENA_CORE_NUMBER=12
[2024-05-19 01:33:18] Starting ATLAS job with PandaID=6208377345
[2024-05-19 01:33:18] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-19 02:40:53]  *** The last 200 lines of the pilot log: ***
[2024-05-19 02:40:53]  filesize=345411
[2024-05-19 02:40:53]  filetype=log
[2024-05-19 02:40:53]  guid=52091ef5-a186-462a-8f9d-fb2a15b4a119
[2024-05-19 02:40:53]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-19 02:40:53]  is_tar=False
[2024-05-19 02:40:53]  lfn=log.38776125._015433.job.log.tgz.1
[2024-05-19 02:40:53]  mtime=0
[2024-05-19 02:40:53]  protocol_id=None
[2024-05-19 02:40:53]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-19 02:40:53]  replicas=None
[2024-05-19 02:40:53]  scope=mc23_13p6TeV
[2024-05-19 02:40:53]  status=None
[2024-05-19 02:40:53]  status_code=0
[2024-05-19 02:40:53]  storage_token=
[2024-05-19 02:40:53]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6208377345/log.38776125._015433.job.log.tgz.1
[2024-05-19 02:40:53]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/07/0b/log.38776125._015433.job.log.tgz.1
[2024-05-19 02:40:53]  workdir=None
[2024-05-19 02:40:53] ]
[2024-05-19 02:40:53] 2024-05-19 06:40:34,481 | INFO     | transferring file log.38776125._015433.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6208377345/log.38776125._015433.job.log.tgz.1 to /var/lib/boinc/slots/
[2024-05-19 02:40:53] 2024-05-19 06:40:34,481 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6208377345/log.38776125._015433.job.log.tgz.1 /var/lib/boinc/slots/0/log.38776125._015433.job
[2024-05-19 02:40:53] 2024-05-19 06:40:34,499 | INFO     | adding to output.list: log.38776125._015433.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/07/0b/log.38776125._015433.job.log.tg
[2024-05-19 02:40:53] 2024-05-19 06:40:34,500 | INFO     | summary of transferred files:
[2024-05-19 02:40:53] 2024-05-19 06:40:34,500 | INFO     |  -- lfn=log.38776125._015433.job.log.tgz.1, status_code=0, status=transferred
[2024-05-19 02:40:53] 2024-05-19 06:40:34,500 | INFO     | stage-out finished correctly
[2024-05-19 02:40:53] 2024-05-19 06:40:35,784 | INFO     | monitor loop #293: job 0:6208377345 is in state 'finished'
[2024-05-19 02:40:53] 2024-05-19 06:40:35,784 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-19 02:40:53] 2024-05-19 06:40:36,346 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-19 02:40:53] 2024-05-19 06:40:36,391 | INFO     | job 6208377345 has state=finished
[2024-05-19 02:40:53] 2024-05-19 06:40:36,391 | INFO     | preparing for final server update for job 6208377345 in state='finished'
[2024-05-19 02:40:53] 2024-05-19 06:40:37,314 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2024-05-19 02:40:53] 2024-05-19 06:40:37,314 | INFO     | this job has now completed (state=finished)
[2024-05-19 02:40:53] 2024-05-19 06:40:37,315 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-19 02:40:53] 2024-05-19 06:40:37,315 | INFO     | job 6208377345 has finished - writing final server update
[2024-05-19 02:40:53] 2024-05-19 06:40:37,315 | INFO     | total number of processed events: 400 (read)
[2024-05-19 02:40:53] 2024-05-19 06:40:37,316 | INFO     | executing command: lscpu
[2024-05-19 02:40:53] 2024-05-19 06:40:37,335 | INFO     | found 12 cores (6 cores per socket, 2 sockets)
[2024-05-19 02:40:53] 2024-05-19 06:40:37,335 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-19 02:40:53] 2024-05-19 06:40:37,367 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-19 02:40:53] 2024-05-19 06:40:38,287 | INFO     | monitor loop #294: job 0:6208377345 is in state 'finished'
[2024-05-19 02:40:53] 2024-05-19 06:40:38,287 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-19 02:40:53] 2024-05-19 06:40:39,946 | INFO     | CPU arch script returned: x86-64-v3
[2024-05-19 02:40:53] 2024-05-19 06:40:39,947 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6208377345/memory_monitor_summary.json (trf name=prmon)
[2024-05-19 02:40:53] 2024-05-19 06:40:39,947 | INFO     | extracted standard info from prmon json
[2024-05-19 02:40:53] 2024-05-19 06:40:39,947 | INFO     | extracted standard memory fields from prmon json
[2024-05-19 02:40:53] 2024-05-19 06:40:39,947 | WARNING  | GPU info not found in prmon json
[2024-05-19 02:40:53] 2024-05-19 06:40:39,948 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-19 02:40:53] 2024-05-19 06:40:39,948 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-19 02:40:53] 2024-05-19 06:40:39,949 | INFO     | fitting pss+swap vs Time
[2024-05-19 02:40:53] 2024-05-19 06:40:39,949 | INFO     | model: linear, x: [1716097132.0, 1716097193.0, 1716097254.0, 1716097315.0, 1716097376.0, 1716097437.0, 1716097498.0, 1716097559.0, 1716097620.0, 1716097681.0, 1716
[2024-05-19 02:40:53] 2024-05-19 06:40:39,949 | INFO     | sum of square deviations: 63666310.0
[2024-05-19 02:40:53] 2024-05-19 06:40:39,949 | INFO     | sum of deviations: 7959108285.000006
[2024-05-19 02:40:53] 2024-05-19 06:40:39,949 | INFO     | mean x: 1716098901.0
[2024-05-19 02:40:53] 2024-05-19 06:40:39,949 | INFO     | mean y: 2876858.6440677964
[2024-05-19 02:40:53] 2024-05-19 06:40:39,950 | INFO     | -- intersect: -214531575991.35626
[2024-05-19 02:40:53] 2024-05-19 06:40:39,950 | INFO     | intersect: -214531575991.35626
[2024-05-19 02:40:53] 2024-05-19 06:40:39,950 | INFO     | chi2: 1.731169517944345
[2024-05-19 02:40:53] 2024-05-19 06:40:39,950 | INFO     | -- intersect: -214531575991.35626
[2024-05-19 02:40:53] 2024-05-19 06:40:39,950 | INFO     | current memory leak: 125.01 B/s (using 59 data points, chi2=1.73)
[2024-05-19 02:40:53] 2024-05-19 06:40:39,950 | INFO     | ..............................
[2024-05-19 02:40:53] 2024-05-19 06:40:39,950 | INFO     | . Timing measurements:
[2024-05-19 02:40:53] 2024-05-19 06:40:39,950 | INFO     | . get job = 0 s
[2024-05-19 02:40:53] 2024-05-19 06:40:39,950 | INFO     | . initial setup = 1 s
[2024-05-19 02:40:53] 2024-05-19 06:40:39,950 | INFO     | . payload setup = 4 s
[2024-05-19 02:40:53] 2024-05-19 06:40:39,950 | INFO     | . stage-in = 0 s
[2024-05-19 02:40:53] 2024-05-19 06:40:39,950 | INFO     | . payload execution = 4006 s
[2024-05-19 02:40:53] 2024-05-19 06:40:39,951 | INFO     | . stage-out = 0 s
[2024-05-19 02:40:53] 2024-05-19 06:40:39,951 | INFO     | . log creation = 0 s
[2024-05-19 02:40:53] 2024-05-19 06:40:39,951 | INFO     | ..............................
[2024-05-19 02:40:53] 2024-05-19 06:40:40,051 | INFO     | 
[2024-05-19 02:40:53] 2024-05-19 06:40:40,051 | INFO     | job summary report
[2024-05-19 02:40:53] 2024-05-19 06:40:40,051 | INFO     | --------------------------------------------------
[2024-05-19 02:40:53] 2024-05-19 06:40:40,051 | INFO     | PanDA job id: 6208377345
[2024-05-19 02:40:53] 2024-05-19 06:40:40,051 | INFO     | task id: 38776125
[2024-05-19 02:40:53] 2024-05-19 06:40:40,051 | INFO     | errors: (none)
[2024-05-19 02:40:53] 2024-05-19 06:40:40,051 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-19 02:40:53] 2024-05-19 06:40:40,051 | INFO     | pilot state: finished 
[2024-05-19 02:40:53] 2024-05-19 06:40:40,051 | INFO     | transexitcode: 0
[2024-05-19 02:40:53] 2024-05-19 06:40:40,051 | INFO     | exeerrorcode: 0
[2024-05-19 02:40:53] 2024-05-19 06:40:40,051 | INFO     | exeerrordiag: 
[2024-05-19 02:40:53] 2024-05-19 06:40:40,051 | INFO     | exitcode: 0
[2024-05-19 02:40:53] 2024-05-19 06:40:40,052 | INFO     | exitmsg: OK
[2024-05-19 02:40:53] 2024-05-19 06:40:40,052 | INFO     | cpuconsumptiontime: 37592 s
[2024-05-19 02:40:53] 2024-05-19 06:40:40,052 | INFO     | nevents: 400
[2024-05-19 02:40:53] 2024-05-19 06:40:40,052 | INFO     | neventsw: 0
[2024-05-19 02:40:53] 2024-05-19 06:40:40,052 | INFO     | pid: 1179186
[2024-05-19 02:40:53] 2024-05-19 06:40:40,052 | INFO     | pgrp: 1179186
[2024-05-19 02:40:53] 2024-05-19 06:40:40,052 | INFO     | corecount: 12
[2024-05-19 02:40:53] 2024-05-19 06:40:40,052 | INFO     | event service: False
[2024-05-19 02:40:53] 2024-05-19 06:40:40,052 | INFO     | sizes: {0: 2390691, 1: 2392227, 3: 2392433, 11: 2392461, 4014: 2418178, 4015: 2427138, 4017: 2427322, 4020: 2427492}
[2024-05-19 02:40:53] 2024-05-19 06:40:40,052 | INFO     | --------------------------------------------------
[2024-05-19 02:40:53] 2024-05-19 06:40:40,052 | INFO     | 
[2024-05-19 02:40:53] 2024-05-19 06:40:40,052 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2024-05-19 02:40:53] 2024-05-19 06:40:40,074 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-19 02:40:53] 2024-05-19 06:40:40,074 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-19 02:40:53] 2024-05-19 06:40:40,074 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-19 02:40:53] 2024-05-19 06:40:40,074 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-19 02:40:53] 2024-05-19 06:40:40,074 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-19 02:40:53] 2024-05-19 06:40:40,074 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-19 02:40:53] 2024-05-19 06:40:40,075 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-19 02:40:53] 2024-05-19 06:40:40,075 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-19 02:40:53] 2024-05-19 06:40:40,075 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-19 02:40:53] 2024-05-19 06:40:40,075 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-19 02:40:53] 2024-05-19 06:40:40,075 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-19 02:40:53] 2024-05-19 06:40:40,075 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-19 02:40:53] 2024-05-19 06:40:40,075 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-19 02:40:53] 2024-05-19 06:40:40,075 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-19 02:40:53] 2024-05-19 06:40:40,075 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-19 02:40:53] 2024-05-19 06:40:40,075 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-19 02:40:53] 2024-05-19 06:40:40,075 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-19 02:40:53] 2024-05-19 06:40:40,075 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-19 02:40:53] 2024-05-19 06:40:40,075 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-19 02:40:53] 2024-05-19 06:40:40,075 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-19 02:40:53] 2024-05-19 06:40:40,075 | INFO     | job 6208377345 has completed (purged errors)
[2024-05-19 02:40:53] 2024-05-19 06:40:40,076 | INFO     | overall cleanup function is called
[2024-05-19 02:40:53] 2024-05-19 06:40:41,083 | INFO     | --- collectZombieJob: --- 10, [1179186]
[2024-05-19 02:40:53] 2024-05-19 06:40:41,083 | INFO     | zombie collector waiting for pid 1179186
[2024-05-19 02:40:53] 2024-05-19 06:40:41,083 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-19 02:40:53] 2024-05-19 06:40:42,088 | INFO     | collected zombie processes
[2024-05-19 02:40:53] 2024-05-19 06:40:42,088 | INFO     | will now attempt to kill all subprocesses of pid=1179186
[2024-05-19 02:40:53] 2024-05-19 06:40:42,152 | INFO     | process IDs to be killed: [1179186] (in reverse order)
[2024-05-19 02:40:53] 2024-05-19 06:40:42,191 | WARNING  | found no corresponding commands to process id(s)
[2024-05-19 02:40:53] 2024-05-19 06:40:42,191 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-19 02:40:53] 2024-05-19 06:40:42,194 | INFO     | did not find any defunct processes belonging to 1179186
[2024-05-19 02:40:53] 2024-05-19 06:40:42,195 | INFO     | did not find any defunct processes belonging to 1179186
[2024-05-19 02:40:53] 2024-05-19 06:40:42,195 | INFO     | ready for new job
[2024-05-19 02:40:53] 2024-05-19 06:40:42,196 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-19 02:40:53] 2024-05-19 06:40:42,197 | INFO     | *************************************
[2024-05-19 02:40:53] 2024-05-19 06:40:42,197 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-19 02:40:53] 2024-05-19 06:40:42,197 | INFO     | *************************************
[2024-05-19 02:40:53] 2024-05-19 06:40:42,197 | INFO     | 
[2024-05-19 02:40:53] 2024-05-19 06:40:42,197 | INFO     | pilot is running in a VM
[2024-05-19 02:40:53] 2024-05-19 06:40:42,197 | INFO     | architecture information:
[2024-05-19 02:40:53] 2024-05-19 06:40:42,198 | INFO     | executing command: cat /etc/os-release
[2024-05-19 02:40:53] 2024-05-19 06:40:42,216 | INFO     | cat /etc/os-release:
[2024-05-19 02:40:53] NAME="CentOS Linux"
[2024-05-19 02:40:53] VERSION="7 (Core)"
[2024-05-19 02:40:53] ID="centos"
[2024-05-19 02:40:53] ID_LIKE="rhel fedora"
[2024-05-19 02:40:53] VERSION_ID="7"
[2024-05-19 02:40:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-19 02:40:53] ANSI_COLOR="0;31"
[2024-05-19 02:40:53] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-19 02:40:53] HOME_URL="https://www.centos.org/"
[2024-05-19 02:40:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-19 02:40:53] 
[2024-05-19 02:40:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-19 02:40:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-19 02:40:53] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-19 02:40:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-19 02:40:53] 
[2024-05-19 02:40:53] 2024-05-19 06:40:42,216 | INFO     | *************************************
[2024-05-19 02:40:53] 2024-05-19 06:40:42,719 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2024-05-19 02:40:53] 2024-05-19 06:40:42,742 | INFO     | sufficient remaining disk space (25469911040 B)
[2024-05-19 02:40:53] 2024-05-19 06:40:42,742 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-19 02:40:53] 2024-05-19 06:40:42,742 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-19 02:40:53] 2024-05-19 06:40:42,743 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-19 02:40:53] 2024-05-19 06:40:42,743 | INFO     | aborting loop
[2024-05-19 02:40:53] 2024-05-19 06:40:42,743 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-19 02:40:53] 2024-05-19 06:40:42,743 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-19 02:40:53] 2024-05-19 06:40:42,743 | INFO     | found 0 job(s) in 20 queues
[2024-05-19 02:40:53] 2024-05-19 06:40:42,743 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-19 02:40:53] 2024-05-19 06:40:42,744 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-19 02:40:53] 2024-05-19 06:40:42,744 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-19 02:40:53] 2024-05-19 06:40:43,358 | INFO     | all payload control threads have been joined
[2024-05-19 02:40:53] 2024-05-19 06:40:43,518 | INFO     | all job control threads have been joined
[2024-05-19 02:40:53] 2024-05-19 06:40:43,668 | INFO     | all data control threads have been joined
[2024-05-19 02:40:53] 2024-05-19 06:40:43,743 | INFO     | [job] job monitor thread has finished
[2024-05-19 02:40:53] 2024-05-19 06:40:43,748 | INFO     | [job] retrieve thread has finished
[2024-05-19 02:40:53] 2024-05-19 06:40:43,937 | INFO     | [data] copytool_in thread has finished
[2024-05-19 02:40:53] 2024-05-19 06:40:44,105 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-19 02:40:53] 2024-05-19 06:40:44,124 | INFO     | [job] create_data_payload thread has finished
[2024-05-19 02:40:53] 2024-05-19 06:40:44,364 | INFO     | [payload] control thread has finished
[2024-05-19 02:40:53] 2024-05-19 06:40:44,523 | INFO     | [job] control thread has finished
[2024-05-19 02:40:53] 2024-05-19 06:40:44,603 | INFO     | [payload] validate_post thread has finished
[2024-05-19 02:40:53] 2024-05-19 06:40:44,673 | INFO     | [data] control thread has finished
[2024-05-19 02:40:53] 2024-05-19 06:40:44,744 | INFO     | [data] copytool_out thread has finished
[2024-05-19 02:40:53] 2024-05-19 06:40:44,769 | INFO     | [payload] failed_post thread has finished
[2024-05-19 02:40:53] 2024-05-19 06:40:45,010 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-19 02:40:53] 2024-05-19 06:40:45,048 | INFO     | [job] validate thread has finished
[2024-05-19 02:40:53] 2024-05-19 06:40:45,060 | INFO     | [payload] validate_pre thread has finished
[2024-05-19 02:40:53] 2024-05-19 06:40:45,189 | INFO     | [payload] execute_payloads thread has finished
[2024-05-19 02:40:53] 2024-05-19 06:40:46,015 | INFO     | [job] queue monitor thread has finished
[2024-05-19 02:40:53] 2024-05-19 06:40:46,749 | INFO     | [data] queue_monitor thread has finished
[2024-05-19 02:40:53] 2024-05-19 06:40:47,526 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139640624617280)>', '<ExcThread(monitor, started 139639386011392)>']
[2024-05-19 02:40:53] 2024-05-19 06:40:47,768 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-19 02:40:53] 2024-05-19 06:40:47,769 | INFO     | [monitor] control thread has ended
[2024-05-19 02:40:53] 2024-05-19 06:40:52,542 | INFO     | all workflow threads have been joined
[2024-05-19 02:40:53] 2024-05-19 06:40:52,543 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-19 02:40:53] 2024-05-19 06:40:52,543 | INFO     | traces error code: 0
[2024-05-19 02:40:53] 2024-05-19 06:40:52,543 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-19 02:40:53] 2024-05-19 06:40:52,596 [wrapper] ==== pilot stdout END ====
[2024-05-19 02:40:53] 2024-05-19 06:40:52,598 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-19 02:40:53] 2024-05-19 06:40:52,600 [wrapper] pilotpid: 1172704
[2024-05-19 02:40:53] 2024-05-19 06:40:52,602 [wrapper] Pilot exit status: 0
[2024-05-19 02:40:53] 2024-05-19 06:40:52,611 [wrapper] pandaids: 6208377345
[2024-05-19 02:40:53] 2024-05-19 06:40:52,628 [wrapper] cleanup: SIGTERM to supervisor_pilot 1189746 1172705
[2024-05-19 02:40:53] 2024-05-19 06:40:52,630 [wrapper] Test setup, not cleaning
[2024-05-19 02:40:53] 2024-05-19 06:40:52,632 [wrapper] ==== wrapper stdout END ====
[2024-05-19 02:40:53] 2024-05-19 06:40:52,634 [wrapper] ==== wrapper stderr END ====
[2024-05-19 02:40:53] 2024-05-19 06:40:52,638 [wrapper] apfmon messages muted
[2024-05-19 02:40:53]  *** Error codes and diagnostics ***
[2024-05-19 02:40:53]     "exeErrorCode": 0,
[2024-05-19 02:40:53]     "exeErrorDiag": "",
[2024-05-19 02:40:53]     "pilotErrorCode": 0,
[2024-05-19 02:40:53]     "pilotErrorDiag": "",
[2024-05-19 02:40:53]  *** Listing of results directory ***
[2024-05-19 02:40:53] total 832660
[2024-05-19 02:40:53] -rw-r--r--. 1 boinc boinc      5633 May 17 19:12 queuedata.json
[2024-05-19 02:40:53] -rwx------. 1 boinc boinc     32251 May 17 19:12 runpilot2-wrapper.sh
[2024-05-19 02:40:53] -rw-r--r--. 1 boinc boinc    467845 May 17 19:12 pilot3.tar.gz
[2024-05-19 02:40:53] -rw-r--r--. 1 boinc boinc       100 May 19 01:33 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-19 02:40:53] -rwxr-xr-x. 1 boinc boinc      7986 May 19 01:33 run_atlas
[2024-05-19 02:40:53] -rw-r--r--. 1 boinc boinc       105 May 19 01:33 job.xml
[2024-05-19 02:40:53] -rw-r--r--. 2 boinc boinc 599323993 May 19 01:33 EVNT.38776119._000437.pool.root.1
[2024-05-19 02:40:53] -rw-r--r--. 2 boinc boinc     17537 May 19 01:33 start_atlas.sh
[2024-05-19 02:40:53] drwxrwx--x. 2 boinc boinc        68 May 19 01:33 shared
[2024-05-19 02:40:53] -rw-r--r--. 2 boinc boinc    480002 May 19 01:33 input.tar.gz
[2024-05-19 02:40:53] -rw-r--r--. 1 boinc boinc      6167 May 19 01:33 init_data.xml
[2024-05-19 02:40:53] -rw-r--r--. 1 boinc boinc         0 May 19 01:33 boinc_lockfile
[2024-05-19 02:40:53] -rw-r--r--. 1 boinc boinc      2636 May 19 01:33 pandaJob.out
[2024-05-19 02:40:53] -rw-------. 1 boinc boinc       424 May 19 01:33 setup.sh.local
[2024-05-19 02:40:53] -rw-------. 1 boinc boinc   1013987 May 19 01:33 agis_schedconf.cvmfs.json
[2024-05-19 02:40:53] -rw-------. 1 boinc boinc         0 May 19 01:33 agis_ddmendpoints.agis.ALL.json
[2024-05-19 02:40:53] -rw-------. 1 boinc boinc   1324701 May 19 01:33 cric_ddmendpoints.json
[2024-05-19 02:40:53] drwx------. 4 boinc boinc      4096 May 19 01:33 pilot3
[2024-05-19 02:40:53] -rw-------. 1 boinc boinc 248345475 May 19 02:40 HITS.38776125._015433.pool.root.1
[2024-05-19 02:40:53] -rw-r--r--. 1 boinc boinc      8192 May 19 02:40 boinc_mmap_file
[2024-05-19 02:40:53] -rw-r--r--. 1 boinc boinc        27 May 19 02:40 wrapper_checkpoint.txt
[2024-05-19 02:40:53] -rw-------. 1 boinc boinc      1043 May 19 02:40 memory_monitor_summary.json
[2024-05-19 02:40:53] -rw-r--r--. 1 boinc boinc       531 May 19 02:40 boinc_task_state.xml
[2024-05-19 02:40:53] -rw-------. 1 boinc boinc    345411 May 19 02:40 log.38776125._015433.job.log.tgz.1
[2024-05-19 02:40:53] -rw-------. 1 boinc boinc      7743 May 19 02:40 heartbeat.json
[2024-05-19 02:40:53] -rw-------. 1 boinc boinc        95 May 19 02:40 pilot_heartbeat.json
[2024-05-19 02:40:53] -rw-------. 1 boinc boinc      4396 May 19 02:40 pilotlog.txt
[2024-05-19 02:40:53] -rw-------. 1 boinc boinc    384955 May 19 02:40 log.38776125._015433.job.log.1
[2024-05-19 02:40:53] -rw-------. 1 boinc boinc       357 May 19 02:40 output.list
[2024-05-19 02:40:53] -rw-r--r--. 1 boinc boinc       620 May 19 02:40 runtime_log
[2024-05-19 02:40:53] -rw-------. 1 boinc boinc    747520 May 19 02:40 result.tar.gz
[2024-05-19 02:40:53] -rw-r--r--. 1 boinc boinc     10988 May 19 02:40 runtime_log.err
[2024-05-19 02:40:53] -rw-------. 1 boinc boinc       643 May 19 02:40 kuoNDmPvLS5n9Rq4apoT9bVoABFKDmABFKDmlqFKDm9YLKDmKtc18n.diag
[2024-05-19 02:40:53] -rw-r--r--. 1 boinc boinc     21819 May 19 02:40 stderr.txt
[2024-05-19 02:40:53] HITS file was successfully produced:
[2024-05-19 02:40:53] -rw-------. 1 boinc boinc 248345475 May 19 02:40 shared/HITS.pool.root.1
[2024-05-19 02:40:53]  *** Contents of shared directory: ***
[2024-05-19 02:40:53] total 829032
[2024-05-19 02:40:53] -rw-r--r--. 2 boinc boinc 599323993 May 19 01:33 ATLAS.root_0
[2024-05-19 02:40:53] -rw-r--r--. 2 boinc boinc     17537 May 19 01:33 start_atlas.sh
[2024-05-19 02:40:53] -rw-r--r--. 2 boinc boinc    480002 May 19 01:33 input.tar.gz
[2024-05-19 02:40:53] -rw-------. 1 boinc boinc 248345475 May 19 02:40 HITS.pool.root.1
[2024-05-19 02:40:53] -rw-------. 1 boinc boinc    747520 May 19 02:40 result.tar.gz
02:40:54 (1168509): run_atlas exited; CPU time 37562.835276
02:40:54 (1168509): called boinc_finish(0)

</stderr_txt>
]]>

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