Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
04:12:39 (244235): wrapper (7.7.26015): starting
04:12:39 (244235): wrapper: running run_atlas (--nthreads 12)
[2024-05-18 04:12:39] Arguments: --nthreads 12
[2024-05-18 04:12:39] Threads: 12
[2024-05-18 04:12:39] Checking for CVMFS
[2024-05-18 04:12:39] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-18 04:12:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-18 04:12:39] Running cvmfs_config stat atlas.cern.ch
[2024-05-18 04:12:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-18 04:12:39] 2.10.1.0 183950 184839 206488 132876 1 293 33534370 45568001 11840 130560 0 1194966630 99.758 743357880 17657 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2024-05-18 04:12:39] CVMFS is ok
[2024-05-18 04:12:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-18 04:12:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-18 04:12:39] Further information can be found at the LHC@home message board.
[2024-05-18 04:12:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-18 04:12:39] Checking for apptainer binary...
[2024-05-18 04:12:39] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-18 04:12:39] Running /usr/bin/apptainer --version
[2024-05-18 04:12:40] apptainer version 1.1.8-1.el7
[2024-05-18 04:12:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-18 04:12:40] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0065.triumf.lcg
[2024-05-18 04:12:40] apptainer works
[2024-05-18 04:12:40] Set ATHENA_PROC_NUMBER=12
[2024-05-18 04:12:40] Set ATHENA_CORE_NUMBER=12
[2024-05-18 04:12:40] Starting ATLAS job with PandaID=6208376874
[2024-05-18 04:12:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-18 05:05:55]  *** The last 200 lines of the pilot log: ***
[2024-05-18 05:05:55]  filetype=log
[2024-05-18 05:05:55]  guid=4addd2ec-5e30-4a75-bfaf-79b49742d225
[2024-05-18 05:05:55]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-18 05:05:55]  is_tar=False
[2024-05-18 05:05:55]  lfn=log.38776104._014426.job.log.tgz.1
[2024-05-18 05:05:55]  mtime=0
[2024-05-18 05:05:55]  protocol_id=None
[2024-05-18 05:05:55]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-18 05:05:55]  replicas=None
[2024-05-18 05:05:55]  scope=mc23_13p6TeV
[2024-05-18 05:05:55]  status=None
[2024-05-18 05:05:55]  status_code=0
[2024-05-18 05:05:55]  storage_token=
[2024-05-18 05:05:55]  surl=/home/boinc/slots/0/PanDA_Pilot-6208376874/log.38776104._014426.job.log.tgz.1
[2024-05-18 05:05:55]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/11/41/log.38776104._014426.job.log.tgz.1
[2024-05-18 05:05:55]  workdir=None
[2024-05-18 05:05:55] ]
[2024-05-18 05:05:55] 2024-05-18 12:05:25,908 | INFO     | transferring file log.38776104._014426.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6208376874/log.38776104._014426.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-05-18 05:05:55] 2024-05-18 12:05:25,908 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6208376874/log.38776104._014426.job.log.tgz.1 /home/boinc/slots/0/log.38776104._014426.job.log.t
[2024-05-18 05:05:55] 2024-05-18 12:05:25,936 | INFO     | adding to output.list: log.38776104._014426.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/11/41/log.38776104._014426.job.log.tg
[2024-05-18 05:05:55] 2024-05-18 12:05:25,937 | INFO     | summary of transferred files:
[2024-05-18 05:05:55] 2024-05-18 12:05:25,937 | INFO     |  -- lfn=log.38776104._014426.job.log.tgz.1, status_code=0, status=transferred
[2024-05-18 05:05:55] 2024-05-18 12:05:25,937 | INFO     | stage-out finished correctly
[2024-05-18 05:05:55] 2024-05-18 12:05:27,387 | INFO     | monitor loop #249: job 0:6208376874 is in state 'finished'
[2024-05-18 05:05:55] 2024-05-18 12:05:27,387 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 05:05:55] 2024-05-18 12:05:29,433 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-18 05:05:55] 2024-05-18 12:05:29,517 | INFO     | job 6208376874 has state=finished
[2024-05-18 05:05:55] 2024-05-18 12:05:29,517 | INFO     | preparing for final server update for job 6208376874 in state='finished'
[2024-05-18 05:05:55] 2024-05-18 12:05:29,518 | INFO     | this job has now completed (state=finished)
[2024-05-18 05:05:55] 2024-05-18 12:05:29,518 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-18 05:05:55] 2024-05-18 12:05:29,518 | INFO     | job 6208376874 has finished - writing final server update
[2024-05-18 05:05:55] 2024-05-18 12:05:29,519 | INFO     | total number of processed events: 400 (read)
[2024-05-18 05:05:55] 2024-05-18 12:05:29,525 | INFO     | executing command: lscpu
[2024-05-18 05:05:55] 2024-05-18 12:05:29,583 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-18 05:05:55] 2024-05-18 12:05:29,583 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-18 05:05:55] 2024-05-18 12:05:29,628 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-18 05:05:55] 2024-05-18 12:05:29,890 | INFO     | monitor loop #250: job 0:6208376874 is in state 'finished'
[2024-05-18 05:05:55] 2024-05-18 12:05:29,890 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 05:05:55] 2024-05-18 12:05:32,393 | INFO     | monitor loop #251: job 0:6208376874 is in state 'finished'
[2024-05-18 05:05:55] 2024-05-18 12:05:32,393 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 05:05:55] 2024-05-18 12:05:33,384 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-18 05:05:55] 2024-05-18 12:05:33,384 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6208376874/memory_monitor_summary.json (trf name=prmon)
[2024-05-18 05:05:55] 2024-05-18 12:05:33,385 | INFO     | extracted standard info from prmon json
[2024-05-18 05:05:55] 2024-05-18 12:05:33,385 | INFO     | extracted standard memory fields from prmon json
[2024-05-18 05:05:55] 2024-05-18 12:05:33,385 | WARNING  | GPU info not found in prmon json
[2024-05-18 05:05:55] 2024-05-18 12:05:33,386 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-18 05:05:55] 2024-05-18 12:05:33,386 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-18 05:05:55] 2024-05-18 12:05:33,387 | INFO     | fitting pss+swap vs Time
[2024-05-18 05:05:55] 2024-05-18 12:05:33,387 | INFO     | model: linear, x: [1716031100.0, 1716031161.0, 1716031222.0, 1716031283.0, 1716031344.0, 1716031405.0, 1716031466.0, 1716031527.0, 1716031588.0, 1716031649.0, 1716
[2024-05-18 05:05:55] 2024-05-18 12:05:33,387 | INFO     | sum of square deviations: 28242390.0
[2024-05-18 05:05:55] 2024-05-18 12:05:33,387 | INFO     | sum of deviations: 17176393664.0
[2024-05-18 05:05:55] 2024-05-18 12:05:33,387 | INFO     | mean x: 1716032442.0
[2024-05-18 05:05:55] 2024-05-18 12:05:33,388 | INFO     | mean y: 2482100.888888889
[2024-05-18 05:05:55] 2024-05-18 12:05:33,388 | INFO     | -- intersect: -1043650295301.7052
[2024-05-18 05:05:55] 2024-05-18 12:05:33,388 | INFO     | intersect: -1043650295301.7052
[2024-05-18 05:05:55] 2024-05-18 12:05:33,388 | INFO     | chi2: 2.2961766378721813
[2024-05-18 05:05:55] 2024-05-18 12:05:33,388 | INFO     | -- intersect: -1043650295301.7052
[2024-05-18 05:05:55] 2024-05-18 12:05:33,388 | INFO     | current memory leak: 608.18 B/s (using 45 data points, chi2=2.30)
[2024-05-18 05:05:55] 2024-05-18 12:05:33,388 | INFO     | ..............................
[2024-05-18 05:05:55] 2024-05-18 12:05:33,388 | INFO     | . Timing measurements:
[2024-05-18 05:05:55] 2024-05-18 12:05:33,388 | INFO     | . get job = 0 s
[2024-05-18 05:05:55] 2024-05-18 12:05:33,388 | INFO     | . initial setup = 1 s
[2024-05-18 05:05:55] 2024-05-18 12:05:33,388 | INFO     | . payload setup = 5 s
[2024-05-18 05:05:55] 2024-05-18 12:05:33,388 | INFO     | . stage-in = 0 s
[2024-05-18 05:05:55] 2024-05-18 12:05:33,389 | INFO     | . payload execution = 3129 s
[2024-05-18 05:05:55] 2024-05-18 12:05:33,389 | INFO     | . stage-out = 0 s
[2024-05-18 05:05:55] 2024-05-18 12:05:33,389 | INFO     | . log creation = 0 s
[2024-05-18 05:05:55] 2024-05-18 12:05:33,389 | INFO     | ..............................
[2024-05-18 05:05:55] 2024-05-18 12:05:33,578 | INFO     | 
[2024-05-18 05:05:55] 2024-05-18 12:05:33,578 | INFO     | job summary report
[2024-05-18 05:05:55] 2024-05-18 12:05:33,578 | INFO     | --------------------------------------------------
[2024-05-18 05:05:55] 2024-05-18 12:05:33,578 | INFO     | PanDA job id: 6208376874
[2024-05-18 05:05:55] 2024-05-18 12:05:33,578 | INFO     | task id: 38776104
[2024-05-18 05:05:55] 2024-05-18 12:05:33,579 | INFO     | errors: (none)
[2024-05-18 05:05:55] 2024-05-18 12:05:33,579 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-18 05:05:55] 2024-05-18 12:05:33,579 | INFO     | pilot state: finished 
[2024-05-18 05:05:55] 2024-05-18 12:05:33,579 | INFO     | transexitcode: 0
[2024-05-18 05:05:55] 2024-05-18 12:05:33,579 | INFO     | exeerrorcode: 0
[2024-05-18 05:05:55] 2024-05-18 12:05:33,579 | INFO     | exeerrordiag: 
[2024-05-18 05:05:55] 2024-05-18 12:05:33,579 | INFO     | exitcode: 0
[2024-05-18 05:05:55] 2024-05-18 12:05:33,579 | INFO     | exitmsg: OK
[2024-05-18 05:05:55] 2024-05-18 12:05:33,579 | INFO     | cpuconsumptiontime: 26197 s
[2024-05-18 05:05:55] 2024-05-18 12:05:33,579 | INFO     | nevents: 400
[2024-05-18 05:05:55] 2024-05-18 12:05:33,580 | INFO     | neventsw: 0
[2024-05-18 05:05:55] 2024-05-18 12:05:33,580 | INFO     | pid: 254997
[2024-05-18 05:05:55] 2024-05-18 12:05:33,580 | INFO     | pgrp: 254997
[2024-05-18 05:05:55] 2024-05-18 12:05:33,580 | INFO     | corecount: 12
[2024-05-18 05:05:55] 2024-05-18 12:05:33,580 | INFO     | event service: False
[2024-05-18 05:05:55] 2024-05-18 12:05:33,580 | INFO     | sizes: {0: 2392080, 1: 2392279, 5: 2392485, 11: 2392541, 3138: 2417951, 3140: 2426905, 3144: 2427089, 3148: 2427259}
[2024-05-18 05:05:55] 2024-05-18 12:05:33,580 | INFO     | --------------------------------------------------
[2024-05-18 05:05:55] 2024-05-18 12:05:33,580 | INFO     | 
[2024-05-18 05:05:55] 2024-05-18 12:05:33,580 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-18 05:05:55] 2024-05-18 12:05:33,602 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-18 05:05:55] 2024-05-18 12:05:33,602 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-18 05:05:55] 2024-05-18 12:05:33,602 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-18 05:05:55] 2024-05-18 12:05:33,602 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-18 05:05:55] 2024-05-18 12:05:33,602 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-18 05:05:55] 2024-05-18 12:05:33,602 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-18 05:05:55] 2024-05-18 12:05:33,602 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-18 05:05:55] 2024-05-18 12:05:33,602 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-18 05:05:55] 2024-05-18 12:05:33,602 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-18 05:05:55] 2024-05-18 12:05:33,602 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-18 05:05:55] 2024-05-18 12:05:33,602 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-18 05:05:55] 2024-05-18 12:05:33,602 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-18 05:05:55] 2024-05-18 12:05:33,603 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-18 05:05:55] 2024-05-18 12:05:33,603 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-18 05:05:55] 2024-05-18 12:05:33,603 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-18 05:05:55] 2024-05-18 12:05:33,603 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-18 05:05:55] 2024-05-18 12:05:33,603 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-18 05:05:55] 2024-05-18 12:05:33,603 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-18 05:05:55] 2024-05-18 12:05:33,603 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-18 05:05:55] 2024-05-18 12:05:33,603 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-18 05:05:55] 2024-05-18 12:05:33,603 | INFO     | job 6208376874 has completed (purged errors)
[2024-05-18 05:05:55] 2024-05-18 12:05:33,603 | INFO     | overall cleanup function is called
[2024-05-18 05:05:55] 2024-05-18 12:05:34,611 | INFO     | --- collectZombieJob: --- 10, [254997]
[2024-05-18 05:05:55] 2024-05-18 12:05:34,611 | INFO     | zombie collector waiting for pid 254997
[2024-05-18 05:05:55] 2024-05-18 12:05:34,611 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-18 05:05:55] 2024-05-18 12:05:35,614 | INFO     | collected zombie processes
[2024-05-18 05:05:55] 2024-05-18 12:05:35,614 | INFO     | will now attempt to kill all subprocesses of pid=254997
[2024-05-18 05:05:55] 2024-05-18 12:05:35,807 | INFO     | process IDs to be killed: [254997] (in reverse order)
[2024-05-18 05:05:55] 2024-05-18 12:05:35,935 | WARNING  | found no corresponding commands to process id(s)
[2024-05-18 05:05:55] 2024-05-18 12:05:35,936 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-18 05:05:55] 2024-05-18 12:05:35,943 | INFO     | did not find any defunct processes belonging to 254997
[2024-05-18 05:05:55] 2024-05-18 12:05:35,948 | INFO     | did not find any defunct processes belonging to 254997
[2024-05-18 05:05:55] 2024-05-18 12:05:35,948 | INFO     | ready for new job
[2024-05-18 05:05:55] 2024-05-18 12:05:35,948 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-18 05:05:55] 2024-05-18 12:05:35,949 | INFO     | *************************************
[2024-05-18 05:05:55] 2024-05-18 12:05:35,949 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-18 05:05:55] 2024-05-18 12:05:35,949 | INFO     | *************************************
[2024-05-18 05:05:55] 2024-05-18 12:05:35,949 | INFO     | 
[2024-05-18 05:05:55] 2024-05-18 12:05:35,952 | INFO     | architecture information:
[2024-05-18 05:05:55] 2024-05-18 12:05:35,952 | INFO     | executing command: cat /etc/os-release
[2024-05-18 05:05:55] 2024-05-18 12:05:35,973 | INFO     | cat /etc/os-release:
[2024-05-18 05:05:55] NAME="CentOS Linux"
[2024-05-18 05:05:55] VERSION="7 (Core)"
[2024-05-18 05:05:55] ID="centos"
[2024-05-18 05:05:55] ID_LIKE="rhel fedora"
[2024-05-18 05:05:55] VERSION_ID="7"
[2024-05-18 05:05:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-18 05:05:55] ANSI_COLOR="0;31"
[2024-05-18 05:05:55] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-18 05:05:55] HOME_URL="https://www.centos.org/"
[2024-05-18 05:05:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-18 05:05:55] 
[2024-05-18 05:05:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-18 05:05:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-18 05:05:55] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-18 05:05:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-18 05:05:55] 
[2024-05-18 05:05:55] 2024-05-18 12:05:35,973 | INFO     | *************************************
[2024-05-18 05:05:55] 2024-05-18 12:05:36,476 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-18 05:05:55] 2024-05-18 12:05:36,502 | INFO     | sufficient remaining disk space (2064465788928 B)
[2024-05-18 05:05:55] 2024-05-18 12:05:36,503 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-18 05:05:55] 2024-05-18 12:05:36,503 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-18 05:05:55] 2024-05-18 12:05:36,503 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-18 05:05:55] 2024-05-18 12:05:36,503 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-18 05:05:55] 2024-05-18 12:05:36,504 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-18 05:05:55] 2024-05-18 12:05:36,505 | INFO     | found 0 job(s) in 20 queues
[2024-05-18 05:05:55] 2024-05-18 12:05:36,505 | INFO     | aborting loop
[2024-05-18 05:05:55] 2024-05-18 12:05:36,505 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-18 05:05:55] 2024-05-18 12:05:36,505 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-18 05:05:55] 2024-05-18 12:05:36,537 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-18 05:05:55] 2024-05-18 12:05:36,759 | INFO     | all data control threads have been joined
[2024-05-18 05:05:55] 2024-05-18 12:05:37,508 | INFO     | [job] retrieve thread has finished
[2024-05-18 05:05:55] 2024-05-18 12:05:37,512 | INFO     | [job] job monitor thread has finished
[2024-05-18 05:05:55] 2024-05-18 12:05:37,584 | INFO     | [job] validate thread has finished
[2024-05-18 05:05:55] 2024-05-18 12:05:37,698 | INFO     | [payload] validate_post thread has finished
[2024-05-18 05:05:55] 2024-05-18 12:05:37,763 | INFO     | [data] control thread has finished
[2024-05-18 05:05:55] 2024-05-18 12:05:37,859 | INFO     | all payload control threads have been joined
[2024-05-18 05:05:55] 2024-05-18 12:05:37,900 | INFO     | [payload] validate_pre thread has finished
[2024-05-18 05:05:55] 2024-05-18 12:05:37,976 | INFO     | [job] create_data_payload thread has finished
[2024-05-18 05:05:55] 2024-05-18 12:05:38,134 | INFO     | all job control threads have been joined
[2024-05-18 05:05:55] 2024-05-18 12:05:38,327 | INFO     | [payload] execute_payloads thread has finished
[2024-05-18 05:05:55] 2024-05-18 12:05:38,453 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-18 05:05:55] 2024-05-18 12:05:38,543 | INFO     | [data] copytool_out thread has finished
[2024-05-18 05:05:55] 2024-05-18 12:05:38,741 | INFO     | [payload] failed_post thread has finished
[2024-05-18 05:05:55] 2024-05-18 12:05:38,861 | INFO     | [payload] control thread has finished
[2024-05-18 05:05:55] 2024-05-18 12:05:38,911 | INFO     | [data] copytool_in thread has finished
[2024-05-18 05:05:55] 2024-05-18 12:05:39,141 | INFO     | [job] control thread has finished
[2024-05-18 05:05:55] 2024-05-18 12:05:39,459 | INFO     | [job] queue monitor thread has finished
[2024-05-18 05:05:55] 2024-05-18 12:05:40,510 | INFO     | [data] queue_monitor thread has finished
[2024-05-18 05:05:55] 2024-05-18 12:05:47,459 | INFO     | job.realtimelogging is not enabled
[2024-05-18 05:05:55] 2024-05-18 12:05:48,464 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-18 05:05:55] 2024-05-18 12:05:49,729 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139930974570304)>', '<ExcThread(monitor, started 139930101610240)>']
[2024-05-18 05:05:55] 2024-05-18 12:05:50,562 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-18 05:05:55] 2024-05-18 12:05:50,562 | INFO     | [monitor] control thread has ended
[2024-05-18 05:05:55] 2024-05-18 12:05:54,755 | INFO     | all workflow threads have been joined
[2024-05-18 05:05:55] 2024-05-18 12:05:54,755 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-18 05:05:55] 2024-05-18 12:05:54,755 | INFO     | traces error code: 0
[2024-05-18 05:05:55] 2024-05-18 12:05:54,755 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-18 05:05:55] 2024-05-18 12:05:54,838 [wrapper] ==== pilot stdout END ====
[2024-05-18 05:05:55] 2024-05-18 12:05:54,842 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-18 05:05:55] 2024-05-18 12:05:54,845 [wrapper] pilotpid: 248470
[2024-05-18 05:05:55] 2024-05-18 12:05:54,848 [wrapper] Pilot exit status: 0
[2024-05-18 05:05:55] 2024-05-18 12:05:54,858 [wrapper] pandaids: 6208376874
[2024-05-18 05:05:55] 2024-05-18 12:05:54,947 [wrapper] cleanup: SIGTERM to supervisor_pilot 151013 248471
[2024-05-18 05:05:55] 2024-05-18 12:05:54,954 [wrapper] Test setup, not cleaning
[2024-05-18 05:05:55] 2024-05-18 12:05:54,956 [wrapper] ==== wrapper stdout END ====
[2024-05-18 05:05:55] 2024-05-18 12:05:54,957 [wrapper] ==== wrapper stderr END ====
[2024-05-18 05:05:55] 2024-05-18 12:05:54,966 [wrapper] apfmon messages muted
[2024-05-18 05:05:55]  *** Error codes and diagnostics ***
[2024-05-18 05:05:55]     "exeErrorCode": 0,
[2024-05-18 05:05:55]     "exeErrorDiag": "",
[2024-05-18 05:05:55]     "pilotErrorCode": 0,
[2024-05-18 05:05:55]     "pilotErrorDiag": "",
[2024-05-18 05:05:55]  *** Listing of results directory ***
[2024-05-18 05:05:55] total 812668
[2024-05-18 05:05:55] -rw-r--r-- 1 boinc boinc    467845 May 17 15:03 pilot3.tar.gz
[2024-05-18 05:05:55] -rwx------ 1 boinc boinc     32251 May 17 15:25 runpilot2-wrapper.sh
[2024-05-18 05:05:55] -rw-r--r-- 1 boinc boinc      5633 May 17 15:25 queuedata.json
[2024-05-18 05:05:55] -rw-r--r-- 1 boinc boinc       100 May 18 04:12 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-18 05:05:55] -rwxr-xr-x 1 boinc boinc      7986 May 18 04:12 run_atlas
[2024-05-18 05:05:55] -rw-r--r-- 1 boinc boinc       105 May 18 04:12 job.xml
[2024-05-18 05:05:55] -rw-r--r-- 2 boinc boinc 601021104 May 18 04:12 EVNT.38776100._000230.pool.root.1
[2024-05-18 05:05:55] -rw-r--r-- 1 boinc boinc      6627 May 18 04:12 init_data.xml
[2024-05-18 05:05:55] -rw-r--r-- 2 boinc boinc    480002 May 18 04:12 input.tar.gz
[2024-05-18 05:05:55] -rw-r--r-- 2 boinc boinc     17537 May 18 04:12 start_atlas.sh
[2024-05-18 05:05:55] drwxrwx--x 2 boinc boinc      4096 May 18 04:12 shared
[2024-05-18 05:05:55] -rw-r--r-- 1 boinc boinc         0 May 18 04:12 boinc_lockfile
[2024-05-18 05:05:55] -rw-r--r-- 1 boinc boinc      2643 May 18 04:12 pandaJob.out
[2024-05-18 05:05:55] -rw------- 1 boinc boinc       424 May 18 04:12 setup.sh.local
[2024-05-18 05:05:55] -rw------- 1 boinc boinc   1019073 May 18 04:12 agis_schedconf.cvmfs.json
[2024-05-18 05:05:55] -rw------- 1 boinc boinc         0 May 18 04:12 agis_ddmendpoints.agis.ALL.json
[2024-05-18 05:05:55] -rw------- 1 boinc boinc   1324701 May 18 04:12 cric_ddmendpoints.json
[2024-05-18 05:05:55] drwx------ 4 boinc boinc      4096 May 18 04:12 pilot3
[2024-05-18 05:05:55] -rw------- 1 boinc boinc 226244376 May 18 05:04 HITS.38776104._014426.pool.root.1
[2024-05-18 05:05:55] -rw------- 1 boinc boinc        95 May 18 05:04 pilot_heartbeat.json
[2024-05-18 05:05:55] -rw-r--r-- 1 boinc boinc       530 May 18 05:05 boinc_task_state.xml
[2024-05-18 05:05:55] -rw------- 1 boinc boinc      1058 May 18 05:05 memory_monitor_summary.json
[2024-05-18 05:05:55] -rw------- 1 boinc boinc    354052 May 18 05:05 log.38776104._014426.job.log.tgz.1
[2024-05-18 05:05:55] -rw------- 1 boinc boinc      7775 May 18 05:05 heartbeat.json
[2024-05-18 05:05:55] -rw------- 1 boinc boinc      4405 May 18 05:05 pilotlog.txt
[2024-05-18 05:05:55] -rw------- 1 boinc boinc    329435 May 18 05:05 log.38776104._014426.job.log.1
[2024-05-18 05:05:55] -rw------- 1 boinc boinc       357 May 18 05:05 output.list
[2024-05-18 05:05:55] -rw-r--r-- 1 boinc boinc       620 May 18 05:05 runtime_log
[2024-05-18 05:05:55] -rw------- 1 boinc boinc    706560 May 18 05:05 result.tar.gz
[2024-05-18 05:05:55] -rw-r--r-- 1 boinc boinc     11286 May 18 05:05 runtime_log.err
[2024-05-18 05:05:55] -rw------- 1 boinc boinc       652 May 18 05:05 oS2KDmuBLS5nsSi4apGgGQJmABFKDmABFKDm4ySLDmBeRKDmEPeGJn.diag
[2024-05-18 05:05:55] -rw-r--r-- 1 boinc boinc        27 May 18 05:05 wrapper_checkpoint.txt
[2024-05-18 05:05:55] -rw-r--r-- 1 boinc boinc     21730 May 18 05:05 stderr.txt
[2024-05-18 05:05:55] -rw-r--r-- 1 boinc boinc      8192 May 18 05:05 boinc_mmap_file
[2024-05-18 05:05:55] HITS file was successfully produced:
[2024-05-18 05:05:55] -rw------- 1 boinc boinc 226244376 May 18 05:04 shared/HITS.pool.root.1
[2024-05-18 05:05:55]  *** Contents of shared directory: ***
[2024-05-18 05:05:55] total 809072
[2024-05-18 05:05:55] -rw-r--r-- 2 boinc boinc 601021104 May 18 04:12 ATLAS.root_0
[2024-05-18 05:05:55] -rw-r--r-- 2 boinc boinc    480002 May 18 04:12 input.tar.gz
[2024-05-18 05:05:55] -rw-r--r-- 2 boinc boinc     17537 May 18 04:12 start_atlas.sh
[2024-05-18 05:05:55] -rw------- 1 boinc boinc 226244376 May 18 05:04 HITS.pool.root.1
[2024-05-18 05:05:55] -rw------- 1 boinc boinc    706560 May 18 05:05 result.tar.gz
05:05:57 (244235): run_atlas exited; CPU time 26081.890108
05:05:57 (244235): called boinc_finish(0)

</stderr_txt>
]]>

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