Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
06:41:18 (201443): wrapper (7.7.26015): starting
06:41:18 (201443): wrapper: running run_atlas (--nthreads 12)
[2024-05-18 06:41:18] Arguments: --nthreads 12
[2024-05-18 06:41:18] Threads: 12
[2024-05-18 06:41:18] Checking for CVMFS
[2024-05-18 06:41:18] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-18 06:41:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-18 06:41:18] Running cvmfs_config stat atlas.cern.ch
[2024-05-18 06:41:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-18 06:41:18] 2.10.1.0 70285 184992 161504 132880 3 60 25050723 45568001 4951 130560 0 619059424 99.754 410334596 3811 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2024-05-18 06:41:18] CVMFS is ok
[2024-05-18 06:41:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-18 06:41:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-18 06:41:18] Further information can be found at the LHC@home message board.
[2024-05-18 06:41:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-18 06:41:18] Checking for apptainer binary...
[2024-05-18 06:41:18] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-18 06:41:18] Running /usr/bin/apptainer --version
[2024-05-18 06:41:18] apptainer version 1.1.8-1.el7
[2024-05-18 06:41:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-18 06:41:19] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0055.triumf.lcg
[2024-05-18 06:41:19] apptainer works
[2024-05-18 06:41:19] Set ATHENA_PROC_NUMBER=12
[2024-05-18 06:41:19] Set ATHENA_CORE_NUMBER=12
[2024-05-18 06:41:19] Starting ATLAS job with PandaID=6208359624
[2024-05-18 06:41:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-18 07:37:13]  *** The last 200 lines of the pilot log: ***
[2024-05-18 07:37:13]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-18 07:37:13]  is_tar=False
[2024-05-18 07:37:13]  lfn=log.38776125._015203.job.log.tgz.1
[2024-05-18 07:37:13]  mtime=0
[2024-05-18 07:37:13]  protocol_id=None
[2024-05-18 07:37:13]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-18 07:37:13]  replicas=None
[2024-05-18 07:37:13]  scope=mc23_13p6TeV
[2024-05-18 07:37:13]  status=None
[2024-05-18 07:37:13]  status_code=0
[2024-05-18 07:37:13]  storage_token=
[2024-05-18 07:37:13]  surl=/home/boinc/slots/0/PanDA_Pilot-6208359624/log.38776125._015203.job.log.tgz.1
[2024-05-18 07:37:13]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fc/4b/log.38776125._015203.job.log.tgz.1
[2024-05-18 07:37:13]  workdir=None
[2024-05-18 07:37:13] ]
[2024-05-18 07:37:13] 2024-05-18 14:36:43,392 | INFO     | transferring file log.38776125._015203.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6208359624/log.38776125._015203.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-05-18 07:37:13] 2024-05-18 14:36:43,392 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6208359624/log.38776125._015203.job.log.tgz.1 /home/boinc/slots/0/log.38776125._015203.job.log.t
[2024-05-18 07:37:13] 2024-05-18 14:36:43,422 | INFO     | adding to output.list: log.38776125._015203.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fc/4b/log.38776125._015203.job.log.tg
[2024-05-18 07:37:13] 2024-05-18 14:36:43,424 | INFO     | summary of transferred files:
[2024-05-18 07:37:13] 2024-05-18 14:36:43,424 | INFO     |  -- lfn=log.38776125._015203.job.log.tgz.1, status_code=0, status=transferred
[2024-05-18 07:37:13] 2024-05-18 14:36:43,424 | INFO     | stage-out finished correctly
[2024-05-18 07:37:13] 2024-05-18 14:36:44,451 | INFO     | monitor loop #261: job 0:6208359624 is in state 'finished'
[2024-05-18 07:37:13] 2024-05-18 14:36:44,451 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 07:37:13] 2024-05-18 14:36:44,630 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-18 07:37:13] 2024-05-18 14:36:46,956 | INFO     | monitor loop #262: job 0:6208359624 is in state 'finished'
[2024-05-18 07:37:13] 2024-05-18 14:36:46,956 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 07:37:13] 2024-05-18 14:36:47,623 | INFO     | job 6208359624 has state=finished
[2024-05-18 07:37:13] 2024-05-18 14:36:47,623 | INFO     | preparing for final server update for job 6208359624 in state='finished'
[2024-05-18 07:37:13] 2024-05-18 14:36:47,624 | INFO     | this job has now completed (state=finished)
[2024-05-18 07:37:13] 2024-05-18 14:36:47,625 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-18 07:37:13] 2024-05-18 14:36:47,625 | INFO     | job 6208359624 has finished - writing final server update
[2024-05-18 07:37:13] 2024-05-18 14:36:47,625 | INFO     | total number of processed events: 400 (read)
[2024-05-18 07:37:13] 2024-05-18 14:36:47,632 | INFO     | executing command: lscpu
[2024-05-18 07:37:13] 2024-05-18 14:36:47,704 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-18 07:37:13] 2024-05-18 14:36:47,704 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-18 07:37:13] 2024-05-18 14:36:47,763 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-18 07:37:13] 2024-05-18 14:36:49,458 | INFO     | monitor loop #263: job 0:6208359624 is in state 'finished'
[2024-05-18 07:37:13] 2024-05-18 14:36:49,458 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 07:37:13] 2024-05-18 14:36:51,962 | INFO     | monitor loop #264: job 0:6208359624 is in state 'finished'
[2024-05-18 07:37:13] 2024-05-18 14:36:51,962 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 07:37:13] 2024-05-18 14:36:51,989 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-18 07:37:13] 2024-05-18 14:36:51,989 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6208359624/memory_monitor_summary.json (trf name=prmon)
[2024-05-18 07:37:13] 2024-05-18 14:36:51,991 | INFO     | extracted standard info from prmon json
[2024-05-18 07:37:13] 2024-05-18 14:36:51,991 | INFO     | extracted standard memory fields from prmon json
[2024-05-18 07:37:13] 2024-05-18 14:36:51,991 | WARNING  | GPU info not found in prmon json
[2024-05-18 07:37:13] 2024-05-18 14:36:51,991 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-18 07:37:13] 2024-05-18 14:36:51,991 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-18 07:37:13] 2024-05-18 14:36:51,992 | INFO     | fitting pss+swap vs Time
[2024-05-18 07:37:13] 2024-05-18 14:36:51,992 | INFO     | model: linear, x: [1716040022.0, 1716040083.0, 1716040144.0, 1716040205.0, 1716040266.0, 1716040327.0, 1716040388.0, 1716040449.0, 1716040510.0, 1716040571.0, 1716
[2024-05-18 07:37:13] 2024-05-18 14:36:51,993 | INFO     | sum of square deviations: 32179208.0
[2024-05-18 07:37:13] 2024-05-18 14:36:51,993 | INFO     | sum of deviations: 12497524999.000002
[2024-05-18 07:37:13] 2024-05-18 14:36:51,993 | INFO     | mean x: 1716041425.0
[2024-05-18 07:37:13] 2024-05-18 14:36:51,993 | INFO     | mean y: 2552101.7021276597
[2024-05-18 07:37:13] 2024-05-18 14:36:51,993 | INFO     | -- intersect: -666461041665.3379
[2024-05-18 07:37:13] 2024-05-18 14:36:51,993 | INFO     | intersect: -666461041665.3379
[2024-05-18 07:37:13] 2024-05-18 14:36:51,993 | INFO     | chi2: 2.0332431208387813
[2024-05-18 07:37:13] 2024-05-18 14:36:51,993 | INFO     | -- intersect: -666461041665.3379
[2024-05-18 07:37:13] 2024-05-18 14:36:51,993 | INFO     | current memory leak: 388.37 B/s (using 47 data points, chi2=2.03)
[2024-05-18 07:37:13] 2024-05-18 14:36:51,993 | INFO     | ..............................
[2024-05-18 07:37:13] 2024-05-18 14:36:51,993 | INFO     | . Timing measurements:
[2024-05-18 07:37:13] 2024-05-18 14:36:51,994 | INFO     | . get job = 0 s
[2024-05-18 07:37:13] 2024-05-18 14:36:51,994 | INFO     | . initial setup = 2 s
[2024-05-18 07:37:13] 2024-05-18 14:36:51,994 | INFO     | . payload setup = 5 s
[2024-05-18 07:37:13] 2024-05-18 14:36:51,994 | INFO     | . stage-in = 0 s
[2024-05-18 07:37:13] 2024-05-18 14:36:51,994 | INFO     | . payload execution = 3285 s
[2024-05-18 07:37:13] 2024-05-18 14:36:51,994 | INFO     | . stage-out = 0 s
[2024-05-18 07:37:13] 2024-05-18 14:36:51,994 | INFO     | . log creation = 0 s
[2024-05-18 07:37:13] 2024-05-18 14:36:51,994 | INFO     | ..............................
[2024-05-18 07:37:13] 2024-05-18 14:36:52,046 | INFO     | 
[2024-05-18 07:37:13] 2024-05-18 14:36:52,046 | INFO     | job summary report
[2024-05-18 07:37:13] 2024-05-18 14:36:52,047 | INFO     | --------------------------------------------------
[2024-05-18 07:37:13] 2024-05-18 14:36:52,047 | INFO     | PanDA job id: 6208359624
[2024-05-18 07:37:13] 2024-05-18 14:36:52,047 | INFO     | task id: 38776125
[2024-05-18 07:37:13] 2024-05-18 14:36:52,047 | INFO     | errors: (none)
[2024-05-18 07:37:13] 2024-05-18 14:36:52,047 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-18 07:37:13] 2024-05-18 14:36:52,047 | INFO     | pilot state: finished 
[2024-05-18 07:37:13] 2024-05-18 14:36:52,047 | INFO     | transexitcode: 0
[2024-05-18 07:37:13] 2024-05-18 14:36:52,047 | INFO     | exeerrorcode: 0
[2024-05-18 07:37:13] 2024-05-18 14:36:52,047 | INFO     | exeerrordiag: 
[2024-05-18 07:37:13] 2024-05-18 14:36:52,047 | INFO     | exitcode: 0
[2024-05-18 07:37:13] 2024-05-18 14:36:52,047 | INFO     | exitmsg: OK
[2024-05-18 07:37:13] 2024-05-18 14:36:52,047 | INFO     | cpuconsumptiontime: 29187 s
[2024-05-18 07:37:13] 2024-05-18 14:36:52,048 | INFO     | nevents: 400
[2024-05-18 07:37:13] 2024-05-18 14:36:52,048 | INFO     | neventsw: 0
[2024-05-18 07:37:13] 2024-05-18 14:36:52,048 | INFO     | pid: 212022
[2024-05-18 07:37:13] 2024-05-18 14:36:52,048 | INFO     | pgrp: 212022
[2024-05-18 07:37:13] 2024-05-18 14:36:52,048 | INFO     | corecount: 12
[2024-05-18 07:37:13] 2024-05-18 14:36:52,048 | INFO     | event service: False
[2024-05-18 07:37:13] 2024-05-18 14:36:52,048 | INFO     | sizes: {0: 2391974, 1: 2392173, 5: 2392379, 11: 2392435, 3294: 2417991, 3296: 2426945, 3297: 2427129, 3305: 2427299}
[2024-05-18 07:37:13] 2024-05-18 14:36:52,048 | INFO     | --------------------------------------------------
[2024-05-18 07:37:13] 2024-05-18 14:36:52,048 | INFO     | 
[2024-05-18 07:37:13] 2024-05-18 14:36:52,049 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-18 07:37:13] 2024-05-18 14:36:52,081 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-18 07:37:13] 2024-05-18 14:36:52,081 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-18 07:37:13] 2024-05-18 14:36:52,082 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-18 07:37:13] 2024-05-18 14:36:52,082 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-18 07:37:13] 2024-05-18 14:36:52,082 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-18 07:37:13] 2024-05-18 14:36:52,082 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-18 07:37:13] 2024-05-18 14:36:52,082 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-18 07:37:13] 2024-05-18 14:36:52,082 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-18 07:37:13] 2024-05-18 14:36:52,082 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-18 07:37:13] 2024-05-18 14:36:52,082 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-18 07:37:13] 2024-05-18 14:36:52,082 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-18 07:37:13] 2024-05-18 14:36:52,083 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-18 07:37:13] 2024-05-18 14:36:52,083 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-18 07:37:13] 2024-05-18 14:36:52,083 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-18 07:37:13] 2024-05-18 14:36:52,083 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-18 07:37:13] 2024-05-18 14:36:52,083 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-18 07:37:13] 2024-05-18 14:36:52,083 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-18 07:37:13] 2024-05-18 14:36:52,083 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-18 07:37:13] 2024-05-18 14:36:52,083 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-18 07:37:13] 2024-05-18 14:36:52,083 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-18 07:37:13] 2024-05-18 14:36:52,084 | INFO     | job 6208359624 has completed (purged errors)
[2024-05-18 07:37:13] 2024-05-18 14:36:52,084 | INFO     | overall cleanup function is called
[2024-05-18 07:37:13] 2024-05-18 14:36:53,090 | INFO     | --- collectZombieJob: --- 10, [212022]
[2024-05-18 07:37:13] 2024-05-18 14:36:53,091 | INFO     | zombie collector waiting for pid 212022
[2024-05-18 07:37:13] 2024-05-18 14:36:53,091 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-18 07:37:13] 2024-05-18 14:36:54,097 | INFO     | collected zombie processes
[2024-05-18 07:37:13] 2024-05-18 14:36:54,098 | INFO     | will now attempt to kill all subprocesses of pid=212022
[2024-05-18 07:37:13] 2024-05-18 14:36:54,219 | INFO     | process IDs to be killed: [212022] (in reverse order)
[2024-05-18 07:37:13] 2024-05-18 14:36:54,341 | WARNING  | found no corresponding commands to process id(s)
[2024-05-18 07:37:13] 2024-05-18 14:36:54,342 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-18 07:37:13] 2024-05-18 14:36:54,350 | INFO     | did not find any defunct processes belonging to 212022
[2024-05-18 07:37:13] 2024-05-18 14:36:54,357 | INFO     | did not find any defunct processes belonging to 212022
[2024-05-18 07:37:13] 2024-05-18 14:36:54,357 | INFO     | ready for new job
[2024-05-18 07:37:13] 2024-05-18 14:36:54,357 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-18 07:37:13] 2024-05-18 14:36:54,359 | INFO     | *************************************
[2024-05-18 07:37:13] 2024-05-18 14:36:54,360 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-18 07:37:13] 2024-05-18 14:36:54,360 | INFO     | *************************************
[2024-05-18 07:37:13] 2024-05-18 14:36:54,360 | INFO     | 
[2024-05-18 07:37:13] 2024-05-18 14:36:54,364 | INFO     | architecture information:
[2024-05-18 07:37:13] 2024-05-18 14:36:54,365 | INFO     | executing command: cat /etc/os-release
[2024-05-18 07:37:13] 2024-05-18 14:36:54,390 | INFO     | cat /etc/os-release:
[2024-05-18 07:37:13] NAME="CentOS Linux"
[2024-05-18 07:37:13] VERSION="7 (Core)"
[2024-05-18 07:37:13] ID="centos"
[2024-05-18 07:37:13] ID_LIKE="rhel fedora"
[2024-05-18 07:37:13] VERSION_ID="7"
[2024-05-18 07:37:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-18 07:37:13] ANSI_COLOR="0;31"
[2024-05-18 07:37:13] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-18 07:37:13] HOME_URL="https://www.centos.org/"
[2024-05-18 07:37:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-18 07:37:13] 
[2024-05-18 07:37:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-18 07:37:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-18 07:37:13] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-18 07:37:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-18 07:37:13] 
[2024-05-18 07:37:13] 2024-05-18 14:36:54,390 | INFO     | *************************************
[2024-05-18 07:37:13] 2024-05-18 14:36:54,894 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-18 07:37:13] 2024-05-18 14:36:54,920 | INFO     | sufficient remaining disk space (2184426029056 B)
[2024-05-18 07:37:13] 2024-05-18 14:36:54,921 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-18 07:37:13] 2024-05-18 14:36:54,921 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-18 07:37:13] 2024-05-18 14:36:54,922 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-18 07:37:13] 2024-05-18 14:36:54,922 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-18 07:37:13] 2024-05-18 14:36:54,923 | INFO     | found 0 job(s) in 20 queues
[2024-05-18 07:37:13] 2024-05-18 14:36:54,923 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-18 07:37:13] 2024-05-18 14:36:54,923 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-18 07:37:13] 2024-05-18 14:36:55,237 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-18 07:37:13] 2024-05-18 14:36:55,472 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-18 07:37:13] 2024-05-18 14:36:55,472 | INFO     | aborting loop
[2024-05-18 07:37:13] 2024-05-18 14:36:55,647 | INFO     | all data control threads have been joined
[2024-05-18 07:37:13] 2024-05-18 14:36:55,928 | INFO     | [job] retrieve thread has finished
[2024-05-18 07:37:13] 2024-05-18 14:36:55,942 | INFO     | [payload] failed_post thread has finished
[2024-05-18 07:37:13] 2024-05-18 14:36:56,009 | INFO     | all job control threads have been joined
[2024-05-18 07:37:13] 2024-05-18 14:36:56,201 | INFO     | [data] copytool_in thread has finished
[2024-05-18 07:37:13] 2024-05-18 14:36:56,208 | INFO     | [payload] execute_payloads thread has finished
[2024-05-18 07:37:13] 2024-05-18 14:36:56,394 | INFO     | all payload control threads have been joined
[2024-05-18 07:37:13] 2024-05-18 14:36:56,478 | INFO     | [job] job monitor thread has finished
[2024-05-18 07:37:13] 2024-05-18 14:36:56,653 | INFO     | [data] control thread has finished
[2024-05-18 07:37:13] 2024-05-18 14:36:56,659 | INFO     | [job] validate thread has finished
[2024-05-18 07:37:13] 2024-05-18 14:36:56,928 | INFO     | [data] copytool_out thread has finished
[2024-05-18 07:37:13] 2024-05-18 14:36:57,015 | INFO     | [job] control thread has finished
[2024-05-18 07:37:13] 2024-05-18 14:36:57,056 | INFO     | [job] create_data_payload thread has finished
[2024-05-18 07:37:13] 2024-05-18 14:36:57,059 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-18 07:37:13] 2024-05-18 14:36:57,230 | INFO     | [payload] validate_pre thread has finished
[2024-05-18 07:37:13] 2024-05-18 14:36:57,267 | INFO     | [payload] validate_post thread has finished
[2024-05-18 07:37:13] 2024-05-18 14:36:57,400 | INFO     | [payload] control thread has finished
[2024-05-18 07:37:13] 2024-05-18 14:36:58,065 | INFO     | [job] queue monitor thread has finished
[2024-05-18 07:37:13] 2024-05-18 14:36:59,244 | INFO     | [data] queue_monitor thread has finished
[2024-05-18 07:37:13] 2024-05-18 14:37:05,927 | INFO     | job.realtimelogging is not enabled
[2024-05-18 07:37:13] 2024-05-18 14:37:06,935 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-18 07:37:13] 2024-05-18 14:37:07,439 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140336841545536)>', '<ExcThread(monitor, started 140336428996352)>']
[2024-05-18 07:37:13] 2024-05-18 14:37:07,990 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-18 07:37:13] 2024-05-18 14:37:07,991 | INFO     | [monitor] control thread has ended
[2024-05-18 07:37:13] 2024-05-18 14:37:12,464 | INFO     | all workflow threads have been joined
[2024-05-18 07:37:13] 2024-05-18 14:37:12,465 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-18 07:37:13] 2024-05-18 14:37:12,465 | INFO     | traces error code: 0
[2024-05-18 07:37:13] 2024-05-18 14:37:12,465 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-18 07:37:13] 2024-05-18 14:37:12,582 [wrapper] ==== pilot stdout END ====
[2024-05-18 07:37:13] 2024-05-18 14:37:12,586 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-18 07:37:13] 2024-05-18 14:37:12,590 [wrapper] pilotpid: 205607
[2024-05-18 07:37:13] 2024-05-18 14:37:12,594 [wrapper] Pilot exit status: 0
[2024-05-18 07:37:13] 2024-05-18 14:37:12,608 [wrapper] pandaids: 6208359624
[2024-05-18 07:37:13] 2024-05-18 14:37:12,682 [wrapper] cleanup: SIGTERM to supervisor_pilot 244903 205608
[2024-05-18 07:37:13] 2024-05-18 14:37:12,687 [wrapper] Test setup, not cleaning
[2024-05-18 07:37:13] 2024-05-18 14:37:12,691 [wrapper] ==== wrapper stdout END ====
[2024-05-18 07:37:13] 2024-05-18 14:37:12,695 [wrapper] ==== wrapper stderr END ====
[2024-05-18 07:37:13] 2024-05-18 14:37:12,703 [wrapper] apfmon messages muted
[2024-05-18 07:37:13]  *** Error codes and diagnostics ***
[2024-05-18 07:37:13]     "exeErrorCode": 0,
[2024-05-18 07:37:13]     "exeErrorDiag": "",
[2024-05-18 07:37:13]     "pilotErrorCode": 0,
[2024-05-18 07:37:13]     "pilotErrorDiag": "",
[2024-05-18 07:37:13]  *** Listing of results directory ***
[2024-05-18 07:37:13] total 833336
[2024-05-18 07:37:13] -rw-r--r-- 1 boinc boinc    467845 May 17 14:41 pilot3.tar.gz
[2024-05-18 07:37:13] -rw-r--r-- 1 boinc boinc      5633 May 17 14:43 queuedata.json
[2024-05-18 07:37:13] -rwx------ 1 boinc boinc     32251 May 17 14:44 runpilot2-wrapper.sh
[2024-05-18 07:37:13] -rw-r--r-- 1 boinc boinc       100 May 18 06:41 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-18 07:37:13] -rwxr-xr-x 1 boinc boinc      7986 May 18 06:41 run_atlas
[2024-05-18 07:37:13] -rw-r--r-- 1 boinc boinc       105 May 18 06:41 job.xml
[2024-05-18 07:37:13] -rw-r--r-- 2 boinc boinc 597566889 May 18 06:41 EVNT.38776119._000419.pool.root.1
[2024-05-18 07:37:13] -rw-r--r-- 2 boinc boinc     17537 May 18 06:41 start_atlas.sh
[2024-05-18 07:37:13] drwxrwx--x 2 boinc boinc      4096 May 18 06:41 shared
[2024-05-18 07:37:13] -rw-r--r-- 2 boinc boinc    480011 May 18 06:41 input.tar.gz
[2024-05-18 07:37:13] -rw-r--r-- 1 boinc boinc      6627 May 18 06:41 init_data.xml
[2024-05-18 07:37:13] -rw-r--r-- 1 boinc boinc         0 May 18 06:41 boinc_lockfile
[2024-05-18 07:37:13] -rw-r--r-- 1 boinc boinc      2635 May 18 06:41 pandaJob.out
[2024-05-18 07:37:13] -rw------- 1 boinc boinc       424 May 18 06:41 setup.sh.local
[2024-05-18 07:37:13] -rw------- 1 boinc boinc   1019434 May 18 06:41 agis_schedconf.cvmfs.json
[2024-05-18 07:37:13] -rw------- 1 boinc boinc         0 May 18 06:41 agis_ddmendpoints.agis.ALL.json
[2024-05-18 07:37:13] -rw------- 1 boinc boinc   1324701 May 18 06:41 cric_ddmendpoints.json
[2024-05-18 07:37:13] drwx------ 4 boinc boinc      4096 May 18 06:41 pilot3
[2024-05-18 07:37:13] -rw------- 1 boinc boinc 250841556 May 18 07:36 HITS.38776125._015203.pool.root.1
[2024-05-18 07:37:13] -rw-r--r-- 1 boinc boinc       530 May 18 07:36 boinc_task_state.xml
[2024-05-18 07:37:13] -rw------- 1 boinc boinc      1046 May 18 07:36 memory_monitor_summary.json
[2024-05-18 07:37:13] -rw------- 1 boinc boinc        95 May 18 07:36 pilot_heartbeat.json
[2024-05-18 07:37:13] -rw------- 1 boinc boinc    354291 May 18 07:36 log.38776125._015203.job.log.tgz.1
[2024-05-18 07:37:13] -rw------- 1 boinc boinc      7762 May 18 07:36 heartbeat.json
[2024-05-18 07:37:13] -rw-r--r-- 1 boinc boinc        27 May 18 07:37 wrapper_checkpoint.txt
[2024-05-18 07:37:13] -rw-r--r-- 1 boinc boinc      8192 May 18 07:37 boinc_mmap_file
[2024-05-18 07:37:13] -rw------- 1 boinc boinc      4405 May 18 07:37 pilotlog.txt
[2024-05-18 07:37:13] -rw------- 1 boinc boinc    341862 May 18 07:37 log.38776125._015203.job.log.1
[2024-05-18 07:37:13] -rw------- 1 boinc boinc       357 May 18 07:37 output.list
[2024-05-18 07:37:13] -rw-r--r-- 1 boinc boinc       620 May 18 07:37 runtime_log
[2024-05-18 07:37:13] -rw------- 1 boinc boinc    716800 May 18 07:37 result.tar.gz
[2024-05-18 07:37:13] -rw-r--r-- 1 boinc boinc     11286 May 18 07:37 runtime_log.err
[2024-05-18 07:37:13] -rw------- 1 boinc boinc       651 May 18 07:37 0udNDmBYKS5nsSi4apGgGQJmABFKDmABFKDm4ySLDmQbRKDm4O7zOn.diag
[2024-05-18 07:37:13] -rw-r--r-- 1 boinc boinc     21878 May 18 07:37 stderr.txt
[2024-05-18 07:37:13] HITS file was successfully produced:
[2024-05-18 07:37:13] -rw------- 1 boinc boinc 250841556 May 18 07:36 shared/HITS.pool.root.1
[2024-05-18 07:37:13]  *** Contents of shared directory: ***
[2024-05-18 07:37:13] total 829728
[2024-05-18 07:37:13] -rw-r--r-- 2 boinc boinc 597566889 May 18 06:41 ATLAS.root_0
[2024-05-18 07:37:13] -rw-r--r-- 2 boinc boinc     17537 May 18 06:41 start_atlas.sh
[2024-05-18 07:37:13] -rw-r--r-- 2 boinc boinc    480011 May 18 06:41 input.tar.gz
[2024-05-18 07:37:13] -rw------- 1 boinc boinc 250841556 May 18 07:36 HITS.pool.root.1
[2024-05-18 07:37:13] -rw------- 1 boinc boinc    716800 May 18 07:37 result.tar.gz
07:37:15 (201443): run_atlas exited; CPU time 29120.420923
07:37:15 (201443): called boinc_finish(0)

</stderr_txt>
]]>

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