Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
11:40:54 (4013989): wrapper (7.7.26015): starting
11:40:54 (4013989): wrapper: running run_atlas (--nthreads 12)
[2024-05-19 11:40:54] Arguments: --nthreads 12
[2024-05-19 11:40:54] Threads: 12
[2024-05-19 11:40:54] Checking for CVMFS
[2024-05-19 11:40:54] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-19 11:40:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-19 11:40:54] Running cvmfs_config stat atlas.cern.ch
[2024-05-19 11:40:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-19 11:40:54] 2.11.2.0 2599122 2109 63612 132918 3 189 4011239 4194305 911 130560 0 3915914 98.794 5876563 8850 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.150.1:3128 1
[2024-05-19 11:40:54] CVMFS is ok
[2024-05-19 11:40:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-19 11:40:54] Checking for apptainer binary...
[2024-05-19 11:40:54] apptainer is not installed, using version from CVMFS
[2024-05-19 11:40:54] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-19 11:40:54] Trebeth
[2024-05-19 11:40:54] apptainer works
[2024-05-19 11:40:54] Set ATHENA_PROC_NUMBER=12
[2024-05-19 11:40:54] Set ATHENA_CORE_NUMBER=12
[2024-05-19 11:40:54] Starting ATLAS job with PandaID=6208359433
[2024-05-19 11:40:54] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/26 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-19 12:55:59]  *** The last 200 lines of the pilot log: ***
[2024-05-19 12:55:59]  filesize=362034
[2024-05-19 12:55:59]  filetype=log
[2024-05-19 12:55:59]  guid=a3958236-fc71-472f-b420-de81419a748a
[2024-05-19 12:55:59]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-19 12:55:59]  is_tar=False
[2024-05-19 12:55:59]  lfn=log.38776104._014305.job.log.tgz.1
[2024-05-19 12:55:59]  mtime=0
[2024-05-19 12:55:59]  protocol_id=None
[2024-05-19 12:55:59]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-19 12:55:59]  replicas=None
[2024-05-19 12:55:59]  scope=mc23_13p6TeV
[2024-05-19 12:55:59]  status=None
[2024-05-19 12:55:59]  status_code=0
[2024-05-19 12:55:59]  storage_token=
[2024-05-19 12:55:59]  surl=/var/lib/boinc-client/slots/26/PanDA_Pilot-6208359433/log.38776104._014305.job.log.tgz.1
[2024-05-19 12:55:59]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1d/9f/log.38776104._014305.job.log.tgz.1
[2024-05-19 12:55:59]  workdir=None
[2024-05-19 12:55:59] ]
[2024-05-19 12:55:59] 2024-05-19 16:55:30,740 | INFO     | transferring file log.38776104._014305.job.log.tgz.1 from /var/lib/boinc-client/slots/26/PanDA_Pilot-6208359433/log.38776104._014305.job.log.tgz.1 to /var/lib/boin
[2024-05-19 12:55:59] 2024-05-19 16:55:30,740 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/26/PanDA_Pilot-6208359433/log.38776104._014305.job.log.tgz.1 /var/lib/boinc-client/slots/26/log.3877
[2024-05-19 12:55:59] 2024-05-19 16:55:30,759 | INFO     | adding to output.list: log.38776104._014305.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1d/9f/log.38776104._014305.job.log.tg
[2024-05-19 12:55:59] 2024-05-19 16:55:30,760 | INFO     | summary of transferred files:
[2024-05-19 12:55:59] 2024-05-19 16:55:30,760 | INFO     |  -- lfn=log.38776104._014305.job.log.tgz.1, status_code=0, status=transferred
[2024-05-19 12:55:59] 2024-05-19 16:55:30,760 | INFO     | stage-out finished correctly
[2024-05-19 12:55:59] 2024-05-19 16:55:31,684 | WARNING  | process 4025906 is no longer using CPU - aborting
[2024-05-19 12:55:59] 2024-05-19 16:55:31,689 | INFO     | will not send any job update
[2024-05-19 12:55:59] 2024-05-19 16:55:31,717 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-19 12:55:59] 2024-05-19 16:55:34,081 | INFO     | job 6208359433 has state=finished
[2024-05-19 12:55:59] 2024-05-19 16:55:34,081 | INFO     | preparing for final server update for job 6208359433 in state='finished'
[2024-05-19 12:55:59] 2024-05-19 16:55:34,082 | INFO     | this job has now completed (state=finished)
[2024-05-19 12:55:59] 2024-05-19 16:55:34,082 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-19 12:55:59] 2024-05-19 16:55:34,082 | INFO     | job 6208359433 has finished - writing final server update
[2024-05-19 12:55:59] 2024-05-19 16:55:34,082 | INFO     | total number of processed events: 400 (read)
[2024-05-19 12:55:59] 2024-05-19 16:55:34,103 | INFO     | executing command: lscpu
[2024-05-19 12:55:59] 2024-05-19 16:55:34,164 | INFO     | found 28 cores (14 cores per socket, 2 sockets)
[2024-05-19 12:55:59] 2024-05-19 16:55:34,165 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-19 12:55:59] 2024-05-19 16:55:34,192 | INFO     | monitor loop #352: job 0:6208359433 is in state 'finished'
[2024-05-19 12:55:59] 2024-05-19 16:55:34,193 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-19 12:55:59] 2024-05-19 16:55:34,221 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-19 12:55:59] 2024-05-19 16:55:36,696 | INFO     | monitor loop #353: job 0:6208359433 is in state 'finished'
[2024-05-19 12:55:59] 2024-05-19 16:55:36,696 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-19 12:55:59] 2024-05-19 16:55:38,849 | INFO     | CPU arch script returned: x86-64-v3
[2024-05-19 12:55:59] 2024-05-19 16:55:38,849 | INFO     | using path: /var/lib/boinc-client/slots/26/PanDA_Pilot-6208359433/memory_monitor_summary.json (trf name=prmon)
[2024-05-19 12:55:59] 2024-05-19 16:55:38,850 | INFO     | extracted standard info from prmon json
[2024-05-19 12:55:59] 2024-05-19 16:55:38,850 | INFO     | extracted standard memory fields from prmon json
[2024-05-19 12:55:59] 2024-05-19 16:55:38,851 | WARNING  | GPU info not found in prmon json
[2024-05-19 12:55:59] 2024-05-19 16:55:38,851 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-19 12:55:59] 2024-05-19 16:55:38,851 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-19 12:55:59] 2024-05-19 16:55:38,853 | INFO     | fitting pss+swap vs Time
[2024-05-19 12:55:59] 2024-05-19 16:55:38,853 | INFO     | model: linear, x: [1716133592.0, 1716133653.0, 1716133714.0, 1716133775.0, 1716133836.0, 1716133897.0, 1716133958.0, 1716134019.0, 1716134080.0, 1716134141.0, 1716
[2024-05-19 12:55:59] 2024-05-19 16:55:38,853 | INFO     | sum of square deviations: 89127252.5
[2024-05-19 12:55:59] 2024-05-19 16:55:38,853 | INFO     | sum of deviations: 3011074161.5000014
[2024-05-19 12:55:59] 2024-05-19 16:55:38,853 | INFO     | mean x: 1716135574.5
[2024-05-19 12:55:59] 2024-05-19 16:55:38,854 | INFO     | mean y: 2786762.0757575757
[2024-05-19 12:55:59] 2024-05-19 16:55:38,854 | INFO     | -- intersect: -57975119445.76914
[2024-05-19 12:55:59] 2024-05-19 16:55:38,854 | INFO     | intersect: -57975119445.76914
[2024-05-19 12:55:59] 2024-05-19 16:55:38,854 | INFO     | chi2: 0.5439055454439458
[2024-05-19 12:55:59] 2024-05-19 16:55:38,854 | INFO     | -- intersect: -57975119445.76914
[2024-05-19 12:55:59] 2024-05-19 16:55:38,854 | INFO     | current memory leak: 33.78 B/s (using 66 data points, chi2=0.54)
[2024-05-19 12:55:59] 2024-05-19 16:55:38,855 | INFO     | ..............................
[2024-05-19 12:55:59] 2024-05-19 16:55:38,855 | INFO     | . Timing measurements:
[2024-05-19 12:55:59] 2024-05-19 16:55:38,855 | INFO     | . get job = 0 s
[2024-05-19 12:55:59] 2024-05-19 16:55:38,855 | INFO     | . initial setup = 2 s
[2024-05-19 12:55:59] 2024-05-19 16:55:38,855 | INFO     | . payload setup = 4 s
[2024-05-19 12:55:59] 2024-05-19 16:55:38,855 | INFO     | . stage-in = 0 s
[2024-05-19 12:55:59] 2024-05-19 16:55:38,855 | INFO     | . payload execution = 4443 s
[2024-05-19 12:55:59] 2024-05-19 16:55:38,855 | INFO     | . stage-out = 0 s
[2024-05-19 12:55:59] 2024-05-19 16:55:38,855 | INFO     | . log creation = 0 s
[2024-05-19 12:55:59] 2024-05-19 16:55:38,855 | INFO     | ..............................
[2024-05-19 12:55:59] 2024-05-19 16:55:38,945 | INFO     | 
[2024-05-19 12:55:59] 2024-05-19 16:55:38,946 | INFO     | job summary report
[2024-05-19 12:55:59] 2024-05-19 16:55:38,946 | INFO     | --------------------------------------------------
[2024-05-19 12:55:59] 2024-05-19 16:55:38,946 | INFO     | PanDA job id: 6208359433
[2024-05-19 12:55:59] 2024-05-19 16:55:38,946 | INFO     | task id: 38776104
[2024-05-19 12:55:59] 2024-05-19 16:55:38,946 | INFO     | errors: (none)
[2024-05-19 12:55:59] 2024-05-19 16:55:38,946 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-19 12:55:59] 2024-05-19 16:55:38,946 | INFO     | pilot state: finished 
[2024-05-19 12:55:59] 2024-05-19 16:55:38,946 | INFO     | transexitcode: 0
[2024-05-19 12:55:59] 2024-05-19 16:55:38,946 | INFO     | exeerrorcode: 0
[2024-05-19 12:55:59] 2024-05-19 16:55:38,946 | INFO     | exeerrordiag: 
[2024-05-19 12:55:59] 2024-05-19 16:55:38,946 | INFO     | exitcode: 0
[2024-05-19 12:55:59] 2024-05-19 16:55:38,946 | INFO     | exitmsg: OK
[2024-05-19 12:55:59] 2024-05-19 16:55:38,946 | INFO     | cpuconsumptiontime: 43744 s
[2024-05-19 12:55:59] 2024-05-19 16:55:38,946 | INFO     | nevents: 400
[2024-05-19 12:55:59] 2024-05-19 16:55:38,947 | INFO     | neventsw: 0
[2024-05-19 12:55:59] 2024-05-19 16:55:38,947 | INFO     | pid: 4025906
[2024-05-19 12:55:59] 2024-05-19 16:55:38,947 | INFO     | pgrp: 4025906
[2024-05-19 12:55:59] 2024-05-19 16:55:38,947 | INFO     | corecount: 12
[2024-05-19 12:55:59] 2024-05-19 16:55:38,947 | INFO     | event service: False
[2024-05-19 12:55:59] 2024-05-19 16:55:38,947 | INFO     | sizes: {0: 2392250, 4: 2392456, 11: 2392484, 4452: 2418528, 4453: 2427504, 4454: 2427560, 4461: 2427858}
[2024-05-19 12:55:59] 2024-05-19 16:55:38,947 | INFO     | --------------------------------------------------
[2024-05-19 12:55:59] 2024-05-19 16:55:38,947 | INFO     | 
[2024-05-19 12:55:59] 2024-05-19 16:55:38,947 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/26
[2024-05-19 12:55:59] 2024-05-19 16:55:38,963 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-19 12:55:59] 2024-05-19 16:55:38,964 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-19 12:55:59] 2024-05-19 16:55:38,964 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-19 12:55:59] 2024-05-19 16:55:38,964 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-19 12:55:59] 2024-05-19 16:55:38,964 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-19 12:55:59] 2024-05-19 16:55:38,964 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-19 12:55:59] 2024-05-19 16:55:38,964 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-19 12:55:59] 2024-05-19 16:55:38,964 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-19 12:55:59] 2024-05-19 16:55:38,964 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-19 12:55:59] 2024-05-19 16:55:38,964 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-19 12:55:59] 2024-05-19 16:55:38,964 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-19 12:55:59] 2024-05-19 16:55:38,965 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-19 12:55:59] 2024-05-19 16:55:38,965 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-19 12:55:59] 2024-05-19 16:55:38,965 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-19 12:55:59] 2024-05-19 16:55:38,965 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-19 12:55:59] 2024-05-19 16:55:38,965 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-19 12:55:59] 2024-05-19 16:55:38,965 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-19 12:55:59] 2024-05-19 16:55:38,965 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-19 12:55:59] 2024-05-19 16:55:38,965 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-19 12:55:59] 2024-05-19 16:55:38,965 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-19 12:55:59] 2024-05-19 16:55:38,965 | INFO     | job 6208359433 has completed (purged errors)
[2024-05-19 12:55:59] 2024-05-19 16:55:38,966 | INFO     | overall cleanup function is called
[2024-05-19 12:55:59] 2024-05-19 16:55:39,973 | INFO     | --- collectZombieJob: --- 10, [4025906]
[2024-05-19 12:55:59] 2024-05-19 16:55:39,973 | INFO     | zombie collector waiting for pid 4025906
[2024-05-19 12:55:59] 2024-05-19 16:55:39,973 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-19 12:55:59] 2024-05-19 16:55:40,977 | INFO     | collected zombie processes
[2024-05-19 12:55:59] 2024-05-19 16:55:40,977 | INFO     | will now attempt to kill all subprocesses of pid=4025906
[2024-05-19 12:55:59] 2024-05-19 16:55:41,079 | INFO     | process IDs to be killed: [4025906] (in reverse order)
[2024-05-19 12:55:59] 2024-05-19 16:55:41,165 | WARNING  | found no corresponding commands to process id(s)
[2024-05-19 12:55:59] 2024-05-19 16:55:41,166 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-19 12:55:59] 2024-05-19 16:55:41,173 | INFO     | did not find any defunct processes belonging to 4025906
[2024-05-19 12:55:59] 2024-05-19 16:55:41,181 | INFO     | did not find any defunct processes belonging to 4025906
[2024-05-19 12:55:59] 2024-05-19 16:55:41,181 | INFO     | ready for new job
[2024-05-19 12:55:59] 2024-05-19 16:55:41,181 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-19 12:55:59] 2024-05-19 16:55:41,183 | INFO     | *************************************
[2024-05-19 12:55:59] 2024-05-19 16:55:41,183 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-19 12:55:59] 2024-05-19 16:55:41,183 | INFO     | *************************************
[2024-05-19 12:55:59] 2024-05-19 16:55:41,183 | INFO     | 
[2024-05-19 12:55:59] 2024-05-19 16:55:41,203 | INFO     | architecture information:
[2024-05-19 12:55:59] 2024-05-19 16:55:41,204 | INFO     | executing command: cat /etc/os-release
[2024-05-19 12:55:59] 2024-05-19 16:55:41,219 | INFO     | cat /etc/os-release:
[2024-05-19 12:55:59] NAME="CentOS Linux"
[2024-05-19 12:55:59] VERSION="7 (Core)"
[2024-05-19 12:55:59] ID="centos"
[2024-05-19 12:55:59] ID_LIKE="rhel fedora"
[2024-05-19 12:55:59] VERSION_ID="7"
[2024-05-19 12:55:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-19 12:55:59] ANSI_COLOR="0;31"
[2024-05-19 12:55:59] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-19 12:55:59] HOME_URL="https://www.centos.org/"
[2024-05-19 12:55:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-19 12:55:59] 
[2024-05-19 12:55:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-19 12:55:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-19 12:55:59] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-19 12:55:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-19 12:55:59] 
[2024-05-19 12:55:59] 2024-05-19 16:55:41,219 | INFO     | *************************************
[2024-05-19 12:55:59] 2024-05-19 16:55:41,721 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/26
[2024-05-19 12:55:59] 2024-05-19 16:55:41,737 | INFO     | sufficient remaining disk space (387034644480 B)
[2024-05-19 12:55:59] 2024-05-19 16:55:41,737 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-19 12:55:59] 2024-05-19 16:55:41,738 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-19 12:55:59] 2024-05-19 16:55:41,738 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-19 12:55:59] 2024-05-19 16:55:41,995 | INFO     | all job control threads have been joined
[2024-05-19 12:55:59] 2024-05-19 16:55:42,080 | INFO     | all payload control threads have been joined
[2024-05-19 12:55:59] 2024-05-19 16:55:42,169 | INFO     | found 0 job(s) in 20 queues
[2024-05-19 12:55:59] 2024-05-19 16:55:42,169 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-19 12:55:59] 2024-05-19 16:55:42,169 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-19 12:55:59] 2024-05-19 16:55:42,309 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-19 12:55:59] 2024-05-19 16:55:42,669 | INFO     | all data control threads have been joined
[2024-05-19 12:55:59] 2024-05-19 16:55:42,716 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-19 12:55:59] 2024-05-19 16:55:42,716 | INFO     | aborting loop
[2024-05-19 12:55:59] 2024-05-19 16:55:42,741 | INFO     | [job] retrieve thread has finished
[2024-05-19 12:55:59] 2024-05-19 16:55:42,841 | INFO     | [job] create_data_payload thread has finished
[2024-05-19 12:55:59] 2024-05-19 16:55:42,845 | INFO     | [payload] validate_pre thread has finished
[2024-05-19 12:55:59] 2024-05-19 16:55:42,905 | INFO     | [payload] execute_payloads thread has finished
[2024-05-19 12:55:59] 2024-05-19 16:55:42,997 | INFO     | [job] control thread has finished
[2024-05-19 12:55:59] 2024-05-19 16:55:43,009 | INFO     | [payload] failed_post thread has finished
[2024-05-19 12:55:59] 2024-05-19 16:55:43,085 | INFO     | [payload] control thread has finished
[2024-05-19 12:55:59] 2024-05-19 16:55:43,509 | INFO     | [data] copytool_in thread has finished
[2024-05-19 12:55:59] 2024-05-19 16:55:43,673 | INFO     | [data] control thread has finished
[2024-05-19 12:55:59] 2024-05-19 16:55:43,721 | INFO     | [job] job monitor thread has finished
[2024-05-19 12:55:59] 2024-05-19 16:55:43,741 | INFO     | [data] copytool_out thread has finished
[2024-05-19 12:55:59] 2024-05-19 16:55:43,781 | INFO     | [payload] validate_post thread has finished
[2024-05-19 12:55:59] 2024-05-19 16:55:43,857 | INFO     | [job] validate thread has finished
[2024-05-19 12:55:59] 2024-05-19 16:55:43,953 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-19 12:55:59] 2024-05-19 16:55:44,957 | INFO     | [job] queue monitor thread has finished
[2024-05-19 12:55:59] 2024-05-19 16:55:46,314 | INFO     | [data] queue_monitor thread has finished
[2024-05-19 12:55:59] 2024-05-19 16:55:51,901 | INFO     | job.realtimelogging is not enabled
[2024-05-19 12:55:59] 2024-05-19 16:55:52,905 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-19 12:55:59] 2024-05-19 16:55:54,513 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140134010074944)>', '<ExcThread(monitor, started 140133726656256)>']
[2024-05-19 12:55:59] 2024-05-19 16:55:55,221 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-19 12:55:59] 2024-05-19 16:55:55,221 | INFO     | [monitor] control thread has ended
[2024-05-19 12:55:59] 2024-05-19 16:55:59,537 | INFO     | all workflow threads have been joined
[2024-05-19 12:55:59] 2024-05-19 16:55:59,537 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-19 12:55:59] 2024-05-19 16:55:59,537 | INFO     | traces error code: 0
[2024-05-19 12:55:59] 2024-05-19 16:55:59,537 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-19 12:55:59] 2024-05-19 16:55:59,618 [wrapper] ==== pilot stdout END ====
[2024-05-19 12:55:59] 2024-05-19 16:55:59,619 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-19 12:55:59] 2024-05-19 16:55:59,620 [wrapper] pilotpid: 4018592
[2024-05-19 12:55:59] 2024-05-19 16:55:59,622 [wrapper] Pilot exit status: 0
[2024-05-19 12:55:59] 2024-05-19 16:55:59,628 [wrapper] pandaids: 6208359433
[2024-05-19 12:55:59] 2024-05-19 16:55:59,674 [wrapper] cleanup: SIGTERM to supervisor_pilot 4155060 4018593
[2024-05-19 12:55:59] 2024-05-19 16:55:59,676 [wrapper] Test setup, not cleaning
[2024-05-19 12:55:59] 2024-05-19 16:55:59,677 [wrapper] ==== wrapper stdout END ====
[2024-05-19 12:55:59] 2024-05-19 16:55:59,679 [wrapper] ==== wrapper stderr END ====
[2024-05-19 12:55:59] 2024-05-19 16:55:59,684 [wrapper] apfmon messages muted
[2024-05-19 12:55:59]  *** Error codes and diagnostics ***
[2024-05-19 12:55:59]     "exeErrorCode": 0,
[2024-05-19 12:55:59]     "exeErrorDiag": "",
[2024-05-19 12:55:59]     "pilotErrorCode": 0,
[2024-05-19 12:55:59]     "pilotErrorDiag": "",
[2024-05-19 12:55:59]  *** Listing of results directory ***
[2024-05-19 12:55:59] total 820276
[2024-05-19 12:55:59] -rw-r--r-- 1 boinc boinc    467845 May 17 17:26 pilot3.tar.gz
[2024-05-19 12:55:59] -rwx------ 1 boinc boinc     32251 May 17 17:30 runpilot2-wrapper.sh
[2024-05-19 12:55:59] -rw-r--r-- 1 boinc boinc      5633 May 17 17:30 queuedata.json
[2024-05-19 12:55:59] -rw-r--r-- 1 boinc boinc       100 May 19 11:40 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-19 12:55:59] -rwxr-xr-x 1 boinc boinc      7986 May 19 11:40 run_atlas
[2024-05-19 12:55:59] -rw-r--r-- 1 boinc boinc       105 May 19 11:40 job.xml
[2024-05-19 12:55:59] -rw-r--r-- 2 boinc boinc     17537 May 19 11:40 start_atlas.sh
[2024-05-19 12:55:59] drwxrwx--x 2 boinc boinc      4096 May 19 11:40 shared
[2024-05-19 12:55:59] -rw-r--r-- 2 boinc boinc    480001 May 19 11:40 input.tar.gz
[2024-05-19 12:55:59] -rw-r--r-- 1 boinc boinc      7599 May 19 11:40 init_data.xml
[2024-05-19 12:55:59] -rw-r--r-- 2 boinc boinc 603319565 May 19 11:40 EVNT.38776100._000003.pool.root.1
[2024-05-19 12:55:59] -rw-r--r-- 1 boinc boinc         0 May 19 11:40 boinc_lockfile
[2024-05-19 12:55:59] -rw-r--r-- 1 boinc boinc      2637 May 19 11:40 pandaJob.out
[2024-05-19 12:55:59] -rw------- 1 boinc boinc       460 May 19 11:40 setup.sh.local
[2024-05-19 12:55:59] -rw------- 1 boinc boinc   1014053 May 19 11:41 agis_schedconf.cvmfs.json
[2024-05-19 12:55:59] -rw------- 1 boinc boinc         0 May 19 11:41 agis_ddmendpoints.agis.ALL.json
[2024-05-19 12:55:59] -rw------- 1 boinc boinc   1324701 May 19 11:41 cric_ddmendpoints.json
[2024-05-19 12:55:59] drwx------ 4 boinc boinc      4096 May 19 11:41 pilot3
[2024-05-19 12:55:59] -rw------- 1 boinc boinc 231455718 May 19 12:54 HITS.38776104._014305.pool.root.1
[2024-05-19 12:55:59] -rw-r--r-- 1 boinc boinc       531 May 19 12:55 boinc_task_state.xml
[2024-05-19 12:55:59] -rw------- 1 boinc boinc        95 May 19 12:55 pilot_heartbeat.json
[2024-05-19 12:55:59] -rw------- 1 boinc boinc      1028 May 19 12:55 memory_monitor_summary.json
[2024-05-19 12:55:59] -rw------- 1 boinc boinc    362034 May 19 12:55 log.38776104._014305.job.log.tgz.1
[2024-05-19 12:55:59] -rw------- 1 boinc boinc      7678 May 19 12:55 heartbeat.json
[2024-05-19 12:55:59] -rw-r--r-- 1 boinc boinc      8192 May 19 12:55 boinc_mmap_file
[2024-05-19 12:55:59] -rw-r--r-- 1 boinc boinc        27 May 19 12:55 wrapper_checkpoint.txt
[2024-05-19 12:55:59] -rw------- 1 boinc boinc      4292 May 19 12:55 pilotlog.txt
[2024-05-19 12:55:59] -rw------- 1 boinc boinc    465593 May 19 12:55 log.38776104._014305.job.log.1
[2024-05-19 12:55:59] -rw------- 1 boinc boinc       357 May 19 12:55 output.list
[2024-05-19 12:55:59] -rw-r--r-- 1 boinc boinc       620 May 19 12:55 runtime_log
[2024-05-19 12:55:59] -rw------- 1 boinc boinc    849920 May 19 12:55 result.tar.gz
[2024-05-19 12:55:59] -rw------- 1 boinc boinc       638 May 19 12:55 sEMNDmcKKS5n9Rq4apoT9bVoABFKDmABFKDmlqFKDmHVLKDmEj0hIn.diag
[2024-05-19 12:55:59] -rw-r--r-- 1 boinc boinc     11477 May 19 12:55 runtime_log.err
[2024-05-19 12:55:59] -rw-r--r-- 1 boinc boinc     20997 May 19 12:55 stderr.txt
[2024-05-19 12:55:59] HITS file was successfully produced:
[2024-05-19 12:55:59] -rw------- 1 boinc boinc 231455718 May 19 12:54 shared/HITS.pool.root.1
[2024-05-19 12:55:59]  *** Contents of shared directory: ***
[2024-05-19 12:55:59] total 816544
[2024-05-19 12:55:59] -rw-r--r-- 2 boinc boinc     17537 May 19 11:40 start_atlas.sh
[2024-05-19 12:55:59] -rw-r--r-- 2 boinc boinc    480001 May 19 11:40 input.tar.gz
[2024-05-19 12:55:59] -rw-r--r-- 2 boinc boinc 603319565 May 19 11:40 ATLAS.root_0
[2024-05-19 12:55:59] -rw------- 1 boinc boinc 231455718 May 19 12:54 HITS.pool.root.1
[2024-05-19 12:55:59] -rw------- 1 boinc boinc    849920 May 19 12:55 result.tar.gz
12:56:01 (4013989): run_atlas exited; CPU time 43618.188233
12:56:01 (4013989): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN