Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
00:09:50 (136377): wrapper (7.7.26015): starting
00:09:50 (136377): wrapper: running run_atlas (--nthreads 12)
[2024-05-18 00:09:50] Arguments: --nthreads 12
[2024-05-18 00:09:50] Threads: 12
[2024-05-18 00:09:50] Checking for CVMFS
[2024-05-18 00:09:51] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-18 00:09:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-18 00:09:51] Running cvmfs_config stat atlas.cern.ch
[2024-05-18 00:09:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-18 00:09:51] 2.10.1.0 61339 184597 135924 132870 2 65 30122472 45568001 16724 130560 0 1061554616 99.775 606827136 15866 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2024-05-18 00:09:51] CVMFS is ok
[2024-05-18 00:09:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-18 00:09:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-18 00:09:51] Further information can be found at the LHC@home message board.
[2024-05-18 00:09:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-18 00:09:51] Checking for apptainer binary...
[2024-05-18 00:09:51] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-18 00:09:51] Running /usr/bin/apptainer --version
[2024-05-18 00:09:51] apptainer version 1.1.8-1.el7
[2024-05-18 00:09:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-18 00:09:52] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0152.triumf.lcg
[2024-05-18 00:09:52] apptainer works
[2024-05-18 00:09:52] Set ATHENA_PROC_NUMBER=12
[2024-05-18 00:09:52] Set ATHENA_CORE_NUMBER=12
[2024-05-18 00:09:52] Starting ATLAS job with PandaID=6208359324
[2024-05-18 00:09:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-18 07:59:18]  *** The last 200 lines of the pilot log: ***
[2024-05-18 07:59:18] 2024-05-18 14:58:55,671 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-18 07:59:18] 2024-05-18 14:58:56,258 | INFO     | monitor loop #2117: job 0:6208359324 is in state 'finished'
[2024-05-18 07:59:18] 2024-05-18 14:58:56,258 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 07:59:18] 2024-05-18 14:58:56,816 | INFO     | job 6208359324 has state=finished
[2024-05-18 07:59:18] 2024-05-18 14:58:56,816 | INFO     | preparing for final server update for job 6208359324 in state='finished'
[2024-05-18 07:59:18] 2024-05-18 14:58:56,816 | INFO     | this job has now completed (state=finished)
[2024-05-18 07:59:18] 2024-05-18 14:58:56,817 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-18 07:59:18] 2024-05-18 14:58:56,817 | INFO     | job 6208359324 has finished - writing final server update
[2024-05-18 07:59:18] 2024-05-18 14:58:56,817 | INFO     | total number of processed events: 1950 (read)
[2024-05-18 07:59:18] 2024-05-18 14:58:56,820 | INFO     | executing command: lscpu
[2024-05-18 07:59:18] 2024-05-18 14:58:56,869 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-18 07:59:18] 2024-05-18 14:58:56,869 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-18 07:59:18] 2024-05-18 14:58:56,914 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-18 07:59:18] 2024-05-18 14:58:58,762 | INFO     | monitor loop #2118: job 0:6208359324 is in state 'finished'
[2024-05-18 07:59:18] 2024-05-18 14:58:58,762 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 07:59:18] 2024-05-18 14:59:00,917 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-18 07:59:18] 2024-05-18 14:59:00,917 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6208359324/memory_monitor_summary.json (trf name=prmon)
[2024-05-18 07:59:18] 2024-05-18 14:59:00,918 | INFO     | extracted standard info from prmon json
[2024-05-18 07:59:18] 2024-05-18 14:59:00,918 | INFO     | extracted standard memory fields from prmon json
[2024-05-18 07:59:18] 2024-05-18 14:59:00,918 | WARNING  | GPU info not found in prmon json
[2024-05-18 07:59:18] 2024-05-18 14:59:00,924 | INFO     | fitting pss+swap vs Time
[2024-05-18 07:59:18] 2024-05-18 14:59:00,924 | INFO     | model: linear, x: [1716016233.0, 1716016294.0, 1716016355.0, 1716016416.0, 1716016477.0, 1716016538.0, 1716016599.0, 1716016660.0, 1716016721.0, 1716016782.0, 1716
[2024-05-18 07:59:18] 2024-05-18 14:59:00,925 | INFO     | sum of square deviations: 30379771358.607452
[2024-05-18 07:59:18] 2024-05-18 14:59:00,928 | INFO     | sum of deviations: 1322370189361.3389
[2024-05-18 07:59:18] 2024-05-18 14:59:00,928 | INFO     | mean x: 1716030263.0976138
[2024-05-18 07:59:18] 2024-05-18 14:59:00,929 | INFO     | mean y: 3791513.2147505423
[2024-05-18 07:59:18] 2024-05-18 14:59:00,929 | INFO     | -- intersect: -74691545629.90839
[2024-05-18 07:59:18] 2024-05-18 14:59:00,929 | INFO     | intersect: -74691545629.90839
[2024-05-18 07:59:18] 2024-05-18 14:59:00,929 | INFO     | chi2: 26.559671475853296
[2024-05-18 07:59:18] 2024-05-18 14:59:00,930 | INFO     | model: linear, x: [1716016233.0, 1716016294.0, 1716016355.0, 1716016416.0, 1716016477.0, 1716016538.0, 1716016599.0, 1716016660.0, 1716016721.0, 1716016782.0, 1716
[2024-05-18 07:59:18] 2024-05-18 14:59:00,930 | INFO     | sum of square deviations: 29401980703.559155
[2024-05-18 07:59:18] 2024-05-18 14:59:00,933 | INFO     | sum of deviations: 1532278344338.612
[2024-05-18 07:59:18] 2024-05-18 14:59:00,934 | INFO     | mean x: 1716030110.5986843
[2024-05-18 07:59:18] 2024-05-18 14:59:00,934 | INFO     | mean y: 3824255.0197368423
[2024-05-18 07:59:18] 2024-05-18 14:59:00,934 | INFO     | -- intersect: -89426741774.3315
[2024-05-18 07:59:18] 2024-05-18 14:59:00,934 | INFO     | intersect: -89426741774.3315
[2024-05-18 07:59:18] 2024-05-18 14:59:00,934 | INFO     | chi2: 23.082557547158572
[2024-05-18 07:59:18] 2024-05-18 14:59:00,934 | INFO     | current chi2=23.082557547158572 (change=13.091705339261969 %)
[2024-05-18 07:59:18] 2024-05-18 14:59:00,934 | INFO     | right removable region: 455
[2024-05-18 07:59:18] 2024-05-18 14:59:00,935 | INFO     | model: linear, x: [1716016538.0, 1716016599.0, 1716016660.0, 1716016721.0, 1716016782.0, 1716016843.0, 1716016904.0, 1716016965.0, 1716017026.0, 1716017087.0, 1716
[2024-05-18 07:59:18] 2024-05-18 14:59:00,935 | INFO     | sum of square deviations: 29401953253.559155
[2024-05-18 07:59:18] 2024-05-18 14:59:00,939 | INFO     | sum of deviations: 1096838960596.3029
[2024-05-18 07:59:18] 2024-05-18 14:59:00,939 | INFO     | mean x: 1716030415.5986843
[2024-05-18 07:59:18] 2024-05-18 14:59:00,939 | INFO     | mean y: 3826671.504385965
[2024-05-18 07:59:18] 2024-05-18 14:59:00,939 | INFO     | -- intersect: -64012635131.728294
[2024-05-18 07:59:18] 2024-05-18 14:59:00,939 | INFO     | intersect: -64012635131.728294
[2024-05-18 07:59:18] 2024-05-18 14:59:00,939 | INFO     | chi2: 22.594849319475067
[2024-05-18 07:59:18] 2024-05-18 14:59:00,939 | INFO     | current chi2=22.594849319475067 (change=14.927978909614314 %)
[2024-05-18 07:59:18] 2024-05-18 14:59:00,939 | INFO     | left removable region: 10
[2024-05-18 07:59:18] 2024-05-18 14:59:00,940 | INFO     | model: linear, x: [1716016843.0, 1716016904.0, 1716016965.0, 1716017026.0, 1716017087.0, 1716017148.0, 1716017209.0, 1716017270.0, 1716017331.0, 1716017392.0, 1716
[2024-05-18 07:59:18] 2024-05-18 14:59:00,940 | INFO     | sum of square deviations: 27325117058.44946
[2024-05-18 07:59:18] 2024-05-18 14:59:00,944 | INFO     | sum of deviations: 1142006630684.1128
[2024-05-18 07:59:18] 2024-05-18 14:59:00,944 | INFO     | mean x: 1716030385.1011236
[2024-05-18 07:59:18] 2024-05-18 14:59:00,944 | INFO     | mean y: 3901119.975280899
[2024-05-18 07:59:18] 2024-05-18 14:59:00,944 | INFO     | -- intersect: -71714660013.68733
[2024-05-18 07:59:18] 2024-05-18 14:59:00,944 | INFO     | intersect: -71714660013.68733
[2024-05-18 07:59:18] 2024-05-18 14:59:00,944 | INFO     | chi2: 15.14487231710945
[2024-05-18 07:59:18] 2024-05-18 14:59:00,944 | INFO     | -- intersect: -71714660013.68733
[2024-05-18 07:59:18] 2024-05-18 14:59:00,944 | INFO     | current memory leak: 41.79 B/s (using 445 data points, chi2=15.14)
[2024-05-18 07:59:18] 2024-05-18 14:59:00,945 | INFO     | ..............................
[2024-05-18 07:59:18] 2024-05-18 14:59:00,945 | INFO     | . Timing measurements:
[2024-05-18 07:59:18] 2024-05-18 14:59:00,945 | INFO     | . get job = 0 s
[2024-05-18 07:59:18] 2024-05-18 14:59:00,945 | INFO     | . initial setup = 2 s
[2024-05-18 07:59:18] 2024-05-18 14:59:00,945 | INFO     | . payload setup = 10 s
[2024-05-18 07:59:18] 2024-05-18 14:59:00,945 | INFO     | . stage-in = 0 s
[2024-05-18 07:59:18] 2024-05-18 14:59:00,945 | INFO     | . payload execution = 28097 s
[2024-05-18 07:59:18] 2024-05-18 14:59:00,945 | INFO     | . stage-out = 3 s
[2024-05-18 07:59:18] 2024-05-18 14:59:00,945 | INFO     | . log creation = 0 s
[2024-05-18 07:59:18] 2024-05-18 14:59:00,945 | INFO     | ..............................
[2024-05-18 07:59:18] 2024-05-18 14:59:01,258 | INFO     | 
[2024-05-18 07:59:18] 2024-05-18 14:59:01,259 | INFO     | job summary report
[2024-05-18 07:59:18] 2024-05-18 14:59:01,259 | INFO     | --------------------------------------------------
[2024-05-18 07:59:18] 2024-05-18 14:59:01,259 | INFO     | PanDA job id: 6208359324
[2024-05-18 07:59:18] 2024-05-18 14:59:01,259 | INFO     | task id: 38734053
[2024-05-18 07:59:18] 2024-05-18 14:59:01,259 | INFO     | errors: (none)
[2024-05-18 07:59:18] 2024-05-18 14:59:01,259 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-18 07:59:18] 2024-05-18 14:59:01,259 | INFO     | pilot state: finished 
[2024-05-18 07:59:18] 2024-05-18 14:59:01,260 | INFO     | transexitcode: 0
[2024-05-18 07:59:18] 2024-05-18 14:59:01,260 | INFO     | exeerrorcode: 0
[2024-05-18 07:59:18] 2024-05-18 14:59:01,260 | INFO     | exeerrordiag: 
[2024-05-18 07:59:18] 2024-05-18 14:59:01,260 | INFO     | exitcode: 0
[2024-05-18 07:59:18] 2024-05-18 14:59:01,260 | INFO     | exitmsg: OK
[2024-05-18 07:59:18] 2024-05-18 14:59:01,260 | INFO     | cpuconsumptiontime: 265685 s
[2024-05-18 07:59:18] 2024-05-18 14:59:01,260 | INFO     | nevents: 1950
[2024-05-18 07:59:18] 2024-05-18 14:59:01,260 | INFO     | neventsw: 0
[2024-05-18 07:59:18] 2024-05-18 14:59:01,260 | INFO     | pid: 148098
[2024-05-18 07:59:18] 2024-05-18 14:59:01,260 | INFO     | pgrp: 148098
[2024-05-18 07:59:18] 2024-05-18 14:59:01,261 | INFO     | corecount: 12
[2024-05-18 07:59:18] 2024-05-18 14:59:01,261 | INFO     | event service: False
[2024-05-18 07:59:18] 2024-05-18 14:59:01,261 | INFO     | sizes: {0: 2392586, 4: 2392792, 11: 2392820, 28111: 2449441, 28116: 2458395, 28117: 2458451, 28123: 2458801}
[2024-05-18 07:59:18] 2024-05-18 14:59:01,261 | INFO     | --------------------------------------------------
[2024-05-18 07:59:18] 2024-05-18 14:59:01,261 | INFO     | 
[2024-05-18 07:59:18] 2024-05-18 14:59:01,261 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-18 07:59:18] 2024-05-18 14:59:01,291 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-18 07:59:18] 2024-05-18 14:59:01,291 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-18 07:59:18] 2024-05-18 14:59:01,292 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-18 07:59:18] 2024-05-18 14:59:01,292 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-18 07:59:18] 2024-05-18 14:59:01,292 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-18 07:59:18] 2024-05-18 14:59:01,292 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-18 07:59:18] 2024-05-18 14:59:01,292 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-18 07:59:18] 2024-05-18 14:59:01,292 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-18 07:59:18] 2024-05-18 14:59:01,292 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-18 07:59:18] 2024-05-18 14:59:01,292 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-18 07:59:18] 2024-05-18 14:59:01,292 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-18 07:59:18] 2024-05-18 14:59:01,292 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-18 07:59:18] 2024-05-18 14:59:01,293 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-18 07:59:18] 2024-05-18 14:59:01,293 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-18 07:59:18] 2024-05-18 14:59:01,293 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-18 07:59:18] 2024-05-18 14:59:01,293 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-18 07:59:18] 2024-05-18 14:59:01,293 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-18 07:59:18] 2024-05-18 14:59:01,293 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-18 07:59:18] 2024-05-18 14:59:01,293 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-18 07:59:18] 2024-05-18 14:59:01,293 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-18 07:59:18] 2024-05-18 14:59:01,293 | INFO     | job 6208359324 has completed (purged errors)
[2024-05-18 07:59:18] 2024-05-18 14:59:01,294 | INFO     | overall cleanup function is called
[2024-05-18 07:59:18] 2024-05-18 14:59:02,313 | INFO     | --- collectZombieJob: --- 10, [148098]
[2024-05-18 07:59:18] 2024-05-18 14:59:02,313 | INFO     | zombie collector waiting for pid 148098
[2024-05-18 07:59:18] 2024-05-18 14:59:02,313 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-18 07:59:18] 2024-05-18 14:59:03,318 | INFO     | collected zombie processes
[2024-05-18 07:59:18] 2024-05-18 14:59:03,318 | INFO     | will now attempt to kill all subprocesses of pid=148098
[2024-05-18 07:59:18] 2024-05-18 14:59:03,547 | INFO     | process IDs to be killed: [148098] (in reverse order)
[2024-05-18 07:59:18] 2024-05-18 14:59:03,684 | WARNING  | found no corresponding commands to process id(s)
[2024-05-18 07:59:18] 2024-05-18 14:59:03,685 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-18 07:59:18] 2024-05-18 14:59:03,697 | INFO     | did not find any defunct processes belonging to 148098
[2024-05-18 07:59:18] 2024-05-18 14:59:03,707 | INFO     | did not find any defunct processes belonging to 148098
[2024-05-18 07:59:18] 2024-05-18 14:59:03,708 | INFO     | ready for new job
[2024-05-18 07:59:18] 2024-05-18 14:59:03,708 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-18 07:59:18] 2024-05-18 14:59:03,710 | INFO     | *************************************
[2024-05-18 07:59:18] 2024-05-18 14:59:03,711 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-18 07:59:18] 2024-05-18 14:59:03,711 | INFO     | *************************************
[2024-05-18 07:59:18] 2024-05-18 14:59:03,711 | INFO     | 
[2024-05-18 07:59:18] 2024-05-18 14:59:03,715 | INFO     | architecture information:
[2024-05-18 07:59:18] 2024-05-18 14:59:03,715 | INFO     | executing command: cat /etc/os-release
[2024-05-18 07:59:18] 2024-05-18 14:59:03,737 | INFO     | cat /etc/os-release:
[2024-05-18 07:59:18] NAME="CentOS Linux"
[2024-05-18 07:59:18] VERSION="7 (Core)"
[2024-05-18 07:59:18] ID="centos"
[2024-05-18 07:59:18] ID_LIKE="rhel fedora"
[2024-05-18 07:59:18] VERSION_ID="7"
[2024-05-18 07:59:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-18 07:59:18] ANSI_COLOR="0;31"
[2024-05-18 07:59:18] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-18 07:59:18] HOME_URL="https://www.centos.org/"
[2024-05-18 07:59:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-18 07:59:18] 
[2024-05-18 07:59:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-18 07:59:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-18 07:59:18] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-18 07:59:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-18 07:59:18] 
[2024-05-18 07:59:18] 2024-05-18 14:59:03,738 | INFO     | *************************************
[2024-05-18 07:59:18] 2024-05-18 14:59:04,241 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-18 07:59:18] 2024-05-18 14:59:04,265 | INFO     | sufficient remaining disk space (2033973198848 B)
[2024-05-18 07:59:18] 2024-05-18 14:59:04,265 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-18 07:59:18] 2024-05-18 14:59:04,265 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-18 07:59:18] 2024-05-18 14:59:04,266 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-18 07:59:18] 2024-05-18 14:59:04,266 | INFO     | found 0 job(s) in 20 queues
[2024-05-18 07:59:18] 2024-05-18 14:59:04,266 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-18 07:59:18] 2024-05-18 14:59:04,266 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-18 07:59:18] 2024-05-18 14:59:04,413 | INFO     | all data control threads have been joined
[2024-05-18 07:59:18] 2024-05-18 14:59:04,492 | INFO     | all payload control threads have been joined
[2024-05-18 07:59:18] 2024-05-18 14:59:04,775 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-18 07:59:18] 2024-05-18 14:59:04,775 | INFO     | aborting loop
[2024-05-18 07:59:18] 2024-05-18 14:59:05,019 | INFO     | all job control threads have been joined
[2024-05-18 07:59:18] 2024-05-18 14:59:05,267 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-18 07:59:18] 2024-05-18 14:59:05,271 | INFO     | [job] retrieve thread has finished
[2024-05-18 07:59:18] 2024-05-18 14:59:05,415 | INFO     | [data] control thread has finished
[2024-05-18 07:59:18] 2024-05-18 14:59:05,451 | INFO     | [job] create_data_payload thread has finished
[2024-05-18 07:59:18] 2024-05-18 14:59:05,487 | INFO     | [payload] validate_pre thread has finished
[2024-05-18 07:59:18] 2024-05-18 14:59:05,497 | INFO     | [payload] control thread has finished
[2024-05-18 07:59:18] 2024-05-18 14:59:05,503 | INFO     | [data] copytool_in thread has finished
[2024-05-18 07:59:18] 2024-05-18 14:59:05,629 | INFO     | [payload] execute_payloads thread has finished
[2024-05-18 07:59:18] 2024-05-18 14:59:05,780 | INFO     | [payload] failed_post thread has finished
[2024-05-18 07:59:18] 2024-05-18 14:59:05,781 | INFO     | [job] job monitor thread has finished
[2024-05-18 07:59:18] 2024-05-18 14:59:06,024 | INFO     | [job] control thread has finished
[2024-05-18 07:59:18] 2024-05-18 14:59:06,025 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-18 07:59:18] 2024-05-18 14:59:06,242 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-18 07:59:18] 2024-05-18 14:59:06,373 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-18 07:59:18] 2024-05-18 14:59:06,677 | INFO     | [payload] validate_post thread has finished
[2024-05-18 07:59:18] 2024-05-18 14:59:06,771 | INFO     | [job] validate thread has finished
[2024-05-18 07:59:18] 2024-05-18 14:59:07,030 | INFO     | [job] queue monitor thread has finished
[2024-05-18 07:59:18] 2024-05-18 14:59:07,272 | INFO     | [data] copytool_out thread has finished
[2024-05-18 07:59:18] 2024-05-18 14:59:10,247 | INFO     | [data] queue_monitor thread has finished
[2024-05-18 07:59:18] 2024-05-18 14:59:12,048 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140204052354880)>', '<ExcThread(monitor, started 140203343726336)>']
[2024-05-18 07:59:18] 2024-05-18 14:59:12,295 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-18 07:59:18] 2024-05-18 14:59:12,295 | INFO     | [monitor] control thread has ended
[2024-05-18 07:59:18] 2024-05-18 14:59:17,073 | INFO     | all workflow threads have been joined
[2024-05-18 07:59:18] 2024-05-18 14:59:17,073 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-18 07:59:18] 2024-05-18 14:59:17,073 | INFO     | traces error code: 0
[2024-05-18 07:59:18] 2024-05-18 14:59:17,073 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-18 07:59:18] 2024-05-18 14:59:17,159 [wrapper] ==== pilot stdout END ====
[2024-05-18 07:59:18] 2024-05-18 14:59:17,162 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-18 07:59:18] 2024-05-18 14:59:17,165 [wrapper] pilotpid: 140635
[2024-05-18 07:59:18] 2024-05-18 14:59:17,167 [wrapper] Pilot exit status: 0
[2024-05-18 07:59:18] 2024-05-18 14:59:17,177 [wrapper] pandaids: 6208359324
[2024-05-18 07:59:18] 2024-05-18 14:59:17,258 [wrapper] cleanup: SIGTERM to supervisor_pilot 159870 140636
[2024-05-18 07:59:18] 2024-05-18 14:59:17,261 [wrapper] Test setup, not cleaning
[2024-05-18 07:59:18] 2024-05-18 14:59:17,263 [wrapper] ==== wrapper stdout END ====
[2024-05-18 07:59:18] 2024-05-18 14:59:17,266 [wrapper] ==== wrapper stderr END ====
[2024-05-18 07:59:18] 2024-05-18 14:59:17,270 [wrapper] apfmon messages muted
[2024-05-18 07:59:18]  *** Error codes and diagnostics ***
[2024-05-18 07:59:18]     "exeErrorCode": 0,
[2024-05-18 07:59:18]     "exeErrorDiag": "",
[2024-05-18 07:59:18]     "pilotErrorCode": 0,
[2024-05-18 07:59:18]     "pilotErrorDiag": "",
[2024-05-18 07:59:18]  *** Listing of results directory ***
[2024-05-18 07:59:18] total 1510924
[2024-05-18 07:59:18] -rw-r--r-- 1 boinc boinc     467845 May 17 13:55 pilot3.tar.gz
[2024-05-18 07:59:18] -rw-r--r-- 1 boinc boinc       5633 May 17 14:16 queuedata.json
[2024-05-18 07:59:18] -rwx------ 1 boinc boinc      32251 May 17 14:16 runpilot2-wrapper.sh
[2024-05-18 07:59:18] -rw-r--r-- 1 boinc boinc        100 May 18 00:09 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-18 07:59:18] -rwxr-xr-x 1 boinc boinc       7986 May 18 00:09 run_atlas
[2024-05-18 07:59:18] -rw-r--r-- 1 boinc boinc        105 May 18 00:09 job.xml
[2024-05-18 07:59:18] -rw-r--r-- 1 boinc boinc       6621 May 18 00:09 init_data.xml
[2024-05-18 07:59:18] -rw-r--r-- 2 boinc boinc  331447468 May 18 00:09 EVNT.38734051._000788.pool.root.1
[2024-05-18 07:59:18] drwxrwx--x 2 boinc boinc       4096 May 18 00:09 shared
[2024-05-18 07:59:18] -rw-r--r-- 2 boinc boinc     480177 May 18 00:09 input.tar.gz
[2024-05-18 07:59:18] -rw-r--r-- 2 boinc boinc      17537 May 18 00:09 start_atlas.sh
[2024-05-18 07:59:18] -rw-r--r-- 1 boinc boinc          0 May 18 00:09 boinc_lockfile
[2024-05-18 07:59:18] -rw-r--r-- 1 boinc boinc       2852 May 18 00:09 pandaJob.out
[2024-05-18 07:59:18] -rw------- 1 boinc boinc        424 May 18 00:09 setup.sh.local
[2024-05-18 07:59:18] -rw------- 1 boinc boinc    1019065 May 18 00:10 agis_schedconf.cvmfs.json
[2024-05-18 07:59:18] -rw------- 1 boinc boinc    1324701 May 18 00:10 cric_ddmendpoints.json
[2024-05-18 07:59:18] drwx------ 4 boinc boinc       4096 May 18 00:10 pilot3
[2024-05-18 07:59:18] -rw-r--r-- 1 boinc boinc        532 May 18 07:46 boinc_task_state.xml
[2024-05-18 07:59:18] -rw------- 1 boinc boinc 1201472269 May 18 07:58 HITS.38734053._008291.pool.root.1
[2024-05-18 07:59:18] -rw------- 1 boinc boinc         95 May 18 07:58 pilot_heartbeat.json
[2024-05-18 07:59:18] -rw------- 1 boinc boinc       1082 May 18 07:58 memory_monitor_summary.json
[2024-05-18 07:59:18] -rw------- 1 boinc boinc          0 May 18 07:58 agis_ddmendpoints.agis.ALL.json
[2024-05-18 07:59:18] -rw------- 1 boinc boinc    2465595 May 18 07:58 log.38734053._008291.job.log.tgz.1
[2024-05-18 07:59:18] -rw------- 1 boinc boinc      27271 May 18 07:59 heartbeat.json
[2024-05-18 07:59:18] -rw-r--r-- 1 boinc boinc       8192 May 18 07:59 boinc_mmap_file
[2024-05-18 07:59:18] -rw-r--r-- 1 boinc boinc         29 May 18 07:59 wrapper_checkpoint.txt
[2024-05-18 07:59:18] -rw------- 1 boinc boinc       4333 May 18 07:59 pilotlog.txt
[2024-05-18 07:59:18] -rw------- 1 boinc boinc    2881575 May 18 07:59 log.38734053._008291.job.log.1
[2024-05-18 07:59:18] -rw------- 1 boinc boinc        353 May 18 07:59 output.list
[2024-05-18 07:59:18] -rw-r--r-- 1 boinc boinc        620 May 18 07:59 runtime_log
[2024-05-18 07:59:18] -rw------- 1 boinc boinc    5386240 May 18 07:59 result.tar.gz
[2024-05-18 07:59:18] -rw-r--r-- 1 boinc boinc      11287 May 18 07:59 runtime_log.err
[2024-05-18 07:59:18] -rw------- 1 boinc boinc        664 May 18 07:59 iutMDme7JS5nsSi4apGgGQJmABFKDmABFKDm4ySLDm8ZRKDm8Ax0Gn.diag
[2024-05-18 07:59:18] -rw-r--r-- 1 boinc boinc      22212 May 18 07:59 stderr.txt
[2024-05-18 07:59:18] HITS file was successfully produced:
[2024-05-18 07:59:18] -rw------- 1 boinc boinc 1201472269 May 18 07:58 shared/HITS.pool.root.1
[2024-05-18 07:59:18]  *** Contents of shared directory: ***
[2024-05-18 07:59:18] total 1502756
[2024-05-18 07:59:18] -rw-r--r-- 2 boinc boinc  331447468 May 18 00:09 ATLAS.root_0
[2024-05-18 07:59:18] -rw-r--r-- 2 boinc boinc     480177 May 18 00:09 input.tar.gz
[2024-05-18 07:59:18] -rw-r--r-- 2 boinc boinc      17537 May 18 00:09 start_atlas.sh
[2024-05-18 07:59:18] -rw------- 1 boinc boinc 1201472269 May 18 07:58 HITS.pool.root.1
[2024-05-18 07:59:18] -rw------- 1 boinc boinc    5386240 May 18 07:59 result.tar.gz
07:59:19 (136377): run_atlas exited; CPU time 257740.806174
07:59:19 (136377): called boinc_finish(0)

</stderr_txt>
]]>

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