Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
07:42:13 (158229): wrapper (7.7.26015): starting
07:42:13 (158229): wrapper: running run_atlas (--nthreads 12)
[2024-05-18 07:42:13] Arguments: --nthreads 12
[2024-05-18 07:42:13] Threads: 12
[2024-05-18 07:42:13] Checking for CVMFS
[2024-05-18 07:42:13] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-18 07:42:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-18 07:42:13] Running cvmfs_config stat atlas.cern.ch
[2024-05-18 07:42:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-18 07:42:13] 2.10.1.0 267274 185050 161636 132882 3 189 37627673 45568001 6649 130560 0 590439079 99.732 427896055 11084 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2024-05-18 07:42:13] CVMFS is ok
[2024-05-18 07:42:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-18 07:42:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-18 07:42:13] Further information can be found at the LHC@home message board.
[2024-05-18 07:42:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-18 07:42:13] Checking for apptainer binary...
[2024-05-18 07:42:13] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-18 07:42:13] Running /usr/bin/apptainer --version
[2024-05-18 07:42:13] apptainer version 1.1.8-1.el7
[2024-05-18 07:42:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-18 07:42:14] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0041.triumf.lcg
[2024-05-18 07:42:14] apptainer works
[2024-05-18 07:42:14] Set ATHENA_PROC_NUMBER=12
[2024-05-18 07:42:14] Set ATHENA_CORE_NUMBER=12
[2024-05-18 07:42:14] Starting ATLAS job with PandaID=6208359313
[2024-05-18 07:42:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-18 08:47:11]  *** The last 200 lines of the pilot log: ***
[2024-05-18 08:47:11]  direct_access_wan=False
[2024-05-18 08:47:11]  domain=
[2024-05-18 08:47:11]  filesize=357778
[2024-05-18 08:47:11]  filetype=log
[2024-05-18 08:47:11]  guid=a4bf4b72-ae23-4155-b556-b6eba45bb4d6
[2024-05-18 08:47:11]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-18 08:47:11]  is_tar=False
[2024-05-18 08:47:11]  lfn=log.38744253._000755.job.log.tgz.1
[2024-05-18 08:47:11]  mtime=0
[2024-05-18 08:47:11]  protocol_id=None
[2024-05-18 08:47:11]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-18 08:47:11]  replicas=None
[2024-05-18 08:47:11]  scope=mc23_13p6TeV
[2024-05-18 08:47:11]  status=None
[2024-05-18 08:47:11]  status_code=0
[2024-05-18 08:47:11]  storage_token=
[2024-05-18 08:47:11]  surl=/home/boinc/slots/0/PanDA_Pilot-6208359313/log.38744253._000755.job.log.tgz.1
[2024-05-18 08:47:11]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/04/d4/log.38744253._000755.job.log.tgz.1
[2024-05-18 08:47:11]  workdir=None
[2024-05-18 08:47:11] ]
[2024-05-18 08:47:11] 2024-05-18 15:46:52,948 | INFO     | transferring file log.38744253._000755.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6208359313/log.38744253._000755.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-05-18 08:47:11] 2024-05-18 15:46:52,948 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6208359313/log.38744253._000755.job.log.tgz.1 /home/boinc/slots/0/log.38744253._000755.job.log.t
[2024-05-18 08:47:11] 2024-05-18 15:46:52,975 | INFO     | adding to output.list: log.38744253._000755.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/04/d4/log.38744253._000755.job.log.tg
[2024-05-18 08:47:11] 2024-05-18 15:46:52,976 | INFO     | summary of transferred files:
[2024-05-18 08:47:11] 2024-05-18 15:46:52,976 | INFO     |  -- lfn=log.38744253._000755.job.log.tgz.1, status_code=0, status=transferred
[2024-05-18 08:47:11] 2024-05-18 15:46:52,976 | INFO     | stage-out finished correctly
[2024-05-18 08:47:11] 2024-05-18 15:46:53,027 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-18 08:47:11] 2024-05-18 15:46:53,178 | INFO     | job 6208359313 has state=finished
[2024-05-18 08:47:11] 2024-05-18 15:46:53,179 | INFO     | preparing for final server update for job 6208359313 in state='finished'
[2024-05-18 08:47:11] 2024-05-18 15:46:53,179 | INFO     | this job has now completed (state=finished)
[2024-05-18 08:47:11] 2024-05-18 15:46:53,180 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-18 08:47:11] 2024-05-18 15:46:53,180 | INFO     | job 6208359313 has finished - writing final server update
[2024-05-18 08:47:11] 2024-05-18 15:46:53,180 | INFO     | total number of processed events: 400 (read)
[2024-05-18 08:47:11] 2024-05-18 15:46:53,187 | INFO     | executing command: lscpu
[2024-05-18 08:47:11] 2024-05-18 15:46:53,252 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-18 08:47:11] 2024-05-18 15:46:53,253 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-18 08:47:11] 2024-05-18 15:46:53,310 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-18 08:47:11] 2024-05-18 15:46:53,882 | INFO     | monitor loop #302: job 0:6208359313 is in state 'finished'
[2024-05-18 08:47:11] 2024-05-18 15:46:53,882 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 08:47:11] 2024-05-18 15:46:56,385 | INFO     | monitor loop #303: job 0:6208359313 is in state 'finished'
[2024-05-18 08:47:11] 2024-05-18 15:46:56,385 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 08:47:11] 2024-05-18 15:46:56,429 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-18 08:47:11] 2024-05-18 15:46:56,430 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6208359313/memory_monitor_summary.json (trf name=prmon)
[2024-05-18 08:47:11] 2024-05-18 15:46:56,430 | INFO     | extracted standard info from prmon json
[2024-05-18 08:47:11] 2024-05-18 15:46:56,431 | INFO     | extracted standard memory fields from prmon json
[2024-05-18 08:47:11] 2024-05-18 15:46:56,431 | WARNING  | GPU info not found in prmon json
[2024-05-18 08:47:11] 2024-05-18 15:46:56,431 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-18 08:47:11] 2024-05-18 15:46:56,431 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-18 08:47:11] 2024-05-18 15:46:56,432 | INFO     | fitting pss+swap vs Time
[2024-05-18 08:47:11] 2024-05-18 15:46:56,432 | INFO     | model: linear, x: [1716043674.0, 1716043735.0, 1716043796.0, 1716043857.0, 1716043918.0, 1716043979.0, 1716044040.0, 1716044101.0, 1716044162.0, 1716044223.0, 1716
[2024-05-18 08:47:11] 2024-05-18 15:46:56,432 | INFO     | sum of square deviations: 54438230.0
[2024-05-18 08:47:11] 2024-05-18 15:46:56,432 | INFO     | sum of deviations: 15106789751.0
[2024-05-18 08:47:11] 2024-05-18 15:46:56,432 | INFO     | mean x: 1716045351.5
[2024-05-18 08:47:11] 2024-05-18 15:46:56,432 | INFO     | mean y: 2610337.964285714
[2024-05-18 08:47:11] 2024-05-18 15:46:56,432 | INFO     | -- intersect: -476205677997.11554
[2024-05-18 08:47:11] 2024-05-18 15:46:56,433 | INFO     | intersect: -476205677997.11554
[2024-05-18 08:47:11] 2024-05-18 15:46:56,433 | INFO     | chi2: 2.2968398147874254
[2024-05-18 08:47:11] 2024-05-18 15:46:56,433 | INFO     | -- intersect: -476205677997.11554
[2024-05-18 08:47:11] 2024-05-18 15:46:56,433 | INFO     | current memory leak: 277.50 B/s (using 56 data points, chi2=2.30)
[2024-05-18 08:47:11] 2024-05-18 15:46:56,433 | INFO     | ..............................
[2024-05-18 08:47:11] 2024-05-18 15:46:56,433 | INFO     | . Timing measurements:
[2024-05-18 08:47:11] 2024-05-18 15:46:56,433 | INFO     | . get job = 0 s
[2024-05-18 08:47:11] 2024-05-18 15:46:56,433 | INFO     | . initial setup = 2 s
[2024-05-18 08:47:11] 2024-05-18 15:46:56,433 | INFO     | . payload setup = 5 s
[2024-05-18 08:47:11] 2024-05-18 15:46:56,433 | INFO     | . stage-in = 0 s
[2024-05-18 08:47:11] 2024-05-18 15:46:56,433 | INFO     | . payload execution = 3844 s
[2024-05-18 08:47:11] 2024-05-18 15:46:56,433 | INFO     | . stage-out = 0 s
[2024-05-18 08:47:11] 2024-05-18 15:46:56,433 | INFO     | . log creation = 0 s
[2024-05-18 08:47:11] 2024-05-18 15:46:56,433 | INFO     | ..............................
[2024-05-18 08:47:11] 2024-05-18 15:46:56,526 | INFO     | 
[2024-05-18 08:47:11] 2024-05-18 15:46:56,526 | INFO     | job summary report
[2024-05-18 08:47:11] 2024-05-18 15:46:56,526 | INFO     | --------------------------------------------------
[2024-05-18 08:47:11] 2024-05-18 15:46:56,526 | INFO     | PanDA job id: 6208359313
[2024-05-18 08:47:11] 2024-05-18 15:46:56,526 | INFO     | task id: 38744253
[2024-05-18 08:47:11] 2024-05-18 15:46:56,527 | INFO     | errors: (none)
[2024-05-18 08:47:11] 2024-05-18 15:46:56,527 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-18 08:47:11] 2024-05-18 15:46:56,527 | INFO     | pilot state: finished 
[2024-05-18 08:47:11] 2024-05-18 15:46:56,527 | INFO     | transexitcode: 0
[2024-05-18 08:47:11] 2024-05-18 15:46:56,527 | INFO     | exeerrorcode: 0
[2024-05-18 08:47:11] 2024-05-18 15:46:56,527 | INFO     | exeerrordiag: 
[2024-05-18 08:47:11] 2024-05-18 15:46:56,527 | INFO     | exitcode: 0
[2024-05-18 08:47:11] 2024-05-18 15:46:56,527 | INFO     | exitmsg: OK
[2024-05-18 08:47:11] 2024-05-18 15:46:56,527 | INFO     | cpuconsumptiontime: 33857 s
[2024-05-18 08:47:11] 2024-05-18 15:46:56,528 | INFO     | nevents: 400
[2024-05-18 08:47:11] 2024-05-18 15:46:56,528 | INFO     | neventsw: 0
[2024-05-18 08:47:11] 2024-05-18 15:46:56,528 | INFO     | pid: 168813
[2024-05-18 08:47:11] 2024-05-18 15:46:56,528 | INFO     | pgrp: 168813
[2024-05-18 08:47:11] 2024-05-18 15:46:56,528 | INFO     | corecount: 12
[2024-05-18 08:47:11] 2024-05-18 15:46:56,528 | INFO     | event service: False
[2024-05-18 08:47:11] 2024-05-18 15:46:56,528 | INFO     | sizes: {0: 2392086, 4: 2392292, 11: 2392320, 3852: 2417999, 3853: 2427009, 3857: 2427123}
[2024-05-18 08:47:11] 2024-05-18 15:46:56,528 | INFO     | --------------------------------------------------
[2024-05-18 08:47:11] 2024-05-18 15:46:56,528 | INFO     | 
[2024-05-18 08:47:11] 2024-05-18 15:46:56,529 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-18 08:47:11] 2024-05-18 15:46:56,559 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-18 08:47:11] 2024-05-18 15:46:56,559 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-18 08:47:11] 2024-05-18 15:46:56,560 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-18 08:47:11] 2024-05-18 15:46:56,560 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-18 08:47:11] 2024-05-18 15:46:56,560 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-18 08:47:11] 2024-05-18 15:46:56,560 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-18 08:47:11] 2024-05-18 15:46:56,560 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-18 08:47:11] 2024-05-18 15:46:56,560 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-18 08:47:11] 2024-05-18 15:46:56,560 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-18 08:47:11] 2024-05-18 15:46:56,560 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-18 08:47:11] 2024-05-18 15:46:56,560 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-18 08:47:11] 2024-05-18 15:46:56,561 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-18 08:47:11] 2024-05-18 15:46:56,561 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-18 08:47:11] 2024-05-18 15:46:56,561 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-18 08:47:11] 2024-05-18 15:46:56,561 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-18 08:47:11] 2024-05-18 15:46:56,561 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-18 08:47:11] 2024-05-18 15:46:56,561 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-18 08:47:11] 2024-05-18 15:46:56,561 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-18 08:47:11] 2024-05-18 15:46:56,561 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-18 08:47:11] 2024-05-18 15:46:56,561 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-18 08:47:11] 2024-05-18 15:46:56,562 | INFO     | job 6208359313 has completed (purged errors)
[2024-05-18 08:47:11] 2024-05-18 15:46:56,562 | INFO     | overall cleanup function is called
[2024-05-18 08:47:11] 2024-05-18 15:46:57,570 | INFO     | --- collectZombieJob: --- 10, [168813]
[2024-05-18 08:47:11] 2024-05-18 15:46:57,570 | INFO     | zombie collector waiting for pid 168813
[2024-05-18 08:47:11] 2024-05-18 15:46:57,570 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-18 08:47:11] 2024-05-18 15:46:58,576 | INFO     | collected zombie processes
[2024-05-18 08:47:11] 2024-05-18 15:46:58,576 | INFO     | will now attempt to kill all subprocesses of pid=168813
[2024-05-18 08:47:11] 2024-05-18 15:46:58,690 | INFO     | process IDs to be killed: [168813] (in reverse order)
[2024-05-18 08:47:11] 2024-05-18 15:46:58,812 | WARNING  | found no corresponding commands to process id(s)
[2024-05-18 08:47:11] 2024-05-18 15:46:58,812 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-18 08:47:11] 2024-05-18 15:46:58,821 | INFO     | did not find any defunct processes belonging to 168813
[2024-05-18 08:47:11] 2024-05-18 15:46:58,828 | INFO     | did not find any defunct processes belonging to 168813
[2024-05-18 08:47:11] 2024-05-18 15:46:58,828 | INFO     | ready for new job
[2024-05-18 08:47:11] 2024-05-18 15:46:58,829 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-18 08:47:11] 2024-05-18 15:46:58,831 | INFO     | *************************************
[2024-05-18 08:47:11] 2024-05-18 15:46:58,831 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-18 08:47:11] 2024-05-18 15:46:58,831 | INFO     | *************************************
[2024-05-18 08:47:11] 2024-05-18 15:46:58,831 | INFO     | 
[2024-05-18 08:47:11] 2024-05-18 15:46:58,835 | INFO     | architecture information:
[2024-05-18 08:47:11] 2024-05-18 15:46:58,836 | INFO     | executing command: cat /etc/os-release
[2024-05-18 08:47:11] 2024-05-18 15:46:58,853 | INFO     | cat /etc/os-release:
[2024-05-18 08:47:11] NAME="CentOS Linux"
[2024-05-18 08:47:11] VERSION="7 (Core)"
[2024-05-18 08:47:11] ID="centos"
[2024-05-18 08:47:11] ID_LIKE="rhel fedora"
[2024-05-18 08:47:11] VERSION_ID="7"
[2024-05-18 08:47:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-18 08:47:11] ANSI_COLOR="0;31"
[2024-05-18 08:47:11] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-18 08:47:11] HOME_URL="https://www.centos.org/"
[2024-05-18 08:47:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-18 08:47:11] 
[2024-05-18 08:47:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-18 08:47:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-18 08:47:11] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-18 08:47:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-18 08:47:11] 
[2024-05-18 08:47:11] 2024-05-18 15:46:58,853 | INFO     | *************************************
[2024-05-18 08:47:11] 2024-05-18 15:46:59,357 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-18 08:47:11] 2024-05-18 15:46:59,379 | INFO     | sufficient remaining disk space (1970463047680 B)
[2024-05-18 08:47:11] 2024-05-18 15:46:59,380 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-18 08:47:11] 2024-05-18 15:46:59,380 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-18 08:47:11] 2024-05-18 15:46:59,381 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-18 08:47:11] 2024-05-18 15:46:59,381 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-18 08:47:11] 2024-05-18 15:46:59,381 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-18 08:47:11] 2024-05-18 15:46:59,381 | INFO     | found 0 job(s) in 20 queues
[2024-05-18 08:47:11] 2024-05-18 15:46:59,382 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-18 08:47:11] 2024-05-18 15:46:59,382 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-18 08:47:11] 2024-05-18 15:46:59,602 | INFO     | all job control threads have been joined
[2024-05-18 08:47:11] 2024-05-18 15:46:59,893 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-18 08:47:11] 2024-05-18 15:46:59,894 | INFO     | aborting loop
[2024-05-18 08:47:11] 2024-05-18 15:47:00,136 | INFO     | all data control threads have been joined
[2024-05-18 08:47:11] 2024-05-18 15:47:00,386 | INFO     | [job] retrieve thread has finished
[2024-05-18 08:47:11] 2024-05-18 15:47:00,541 | INFO     | [job] validate thread has finished
[2024-05-18 08:47:11] 2024-05-18 15:47:00,603 | INFO     | [job] control thread has finished
[2024-05-18 08:47:11] 2024-05-18 15:47:00,641 | INFO     | [payload] execute_payloads thread has finished
[2024-05-18 08:47:11] 2024-05-18 15:47:00,723 | INFO     | all payload control threads have been joined
[2024-05-18 08:47:11] 2024-05-18 15:47:00,900 | INFO     | [job] job monitor thread has finished
[2024-05-18 08:47:11] 2024-05-18 15:47:01,041 | INFO     | [job] create_data_payload thread has finished
[2024-05-18 08:47:11] 2024-05-18 15:47:01,142 | INFO     | [data] control thread has finished
[2024-05-18 08:47:11] 2024-05-18 15:47:01,233 | INFO     | [payload] validate_pre thread has finished
[2024-05-18 08:47:11] 2024-05-18 15:47:01,238 | INFO     | [payload] validate_post thread has finished
[2024-05-18 08:47:11] 2024-05-18 15:47:01,278 | INFO     | [data] copytool_in thread has finished
[2024-05-18 08:47:11] 2024-05-18 15:47:01,387 | INFO     | [data] copytool_out thread has finished
[2024-05-18 08:47:11] 2024-05-18 15:47:01,393 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-18 08:47:11] 2024-05-18 15:47:01,494 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-18 08:47:11] 2024-05-18 15:47:01,676 | INFO     | [payload] failed_post thread has finished
[2024-05-18 08:47:11] 2024-05-18 15:47:01,728 | INFO     | [payload] control thread has finished
[2024-05-18 08:47:11] 2024-05-18 15:47:02,499 | INFO     | [job] queue monitor thread has finished
[2024-05-18 08:47:11] 2024-05-18 15:47:03,388 | INFO     | [data] queue_monitor thread has finished
[2024-05-18 08:47:11] 2024-05-18 15:47:04,711 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140688905426752)>', '<ExcThread(monitor, started 140688364664576)>']
[2024-05-18 08:47:11] 2024-05-18 15:47:05,403 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-18 08:47:11] 2024-05-18 15:47:05,403 | INFO     | [monitor] control thread has ended
[2024-05-18 08:47:11] 2024-05-18 15:47:09,712 | INFO     | all workflow threads have been joined
[2024-05-18 08:47:11] 2024-05-18 15:47:09,712 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-18 08:47:11] 2024-05-18 15:47:09,713 | INFO     | traces error code: 0
[2024-05-18 08:47:11] 2024-05-18 15:47:09,713 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-18 08:47:11] 2024-05-18 15:47:09,826 [wrapper] ==== pilot stdout END ====
[2024-05-18 08:47:11] 2024-05-18 15:47:09,829 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-18 08:47:11] 2024-05-18 15:47:09,832 [wrapper] pilotpid: 162393
[2024-05-18 08:47:11] 2024-05-18 15:47:09,834 [wrapper] Pilot exit status: 0
[2024-05-18 08:47:11] 2024-05-18 15:47:09,844 [wrapper] pandaids: 6208359313
[2024-05-18 08:47:11] 2024-05-18 15:47:09,910 [wrapper] cleanup: SIGTERM to supervisor_pilot 221084 162394
[2024-05-18 08:47:11] 2024-05-18 15:47:09,914 [wrapper] Test setup, not cleaning
[2024-05-18 08:47:11] 2024-05-18 15:47:09,918 [wrapper] ==== wrapper stdout END ====
[2024-05-18 08:47:11] 2024-05-18 15:47:09,922 [wrapper] ==== wrapper stderr END ====
[2024-05-18 08:47:11] 2024-05-18 15:47:09,926 [wrapper] apfmon messages muted
[2024-05-18 08:47:11]  *** Error codes and diagnostics ***
[2024-05-18 08:47:11]     "exeErrorCode": 0,
[2024-05-18 08:47:11]     "exeErrorDiag": "",
[2024-05-18 08:47:11]     "pilotErrorCode": 0,
[2024-05-18 08:47:11]     "pilotErrorDiag": "",
[2024-05-18 08:47:11]  *** Listing of results directory ***
[2024-05-18 08:47:11] total 807884
[2024-05-18 08:47:11] -rw-r--r-- 1 boinc boinc    467845 May 17 13:55 pilot3.tar.gz
[2024-05-18 08:47:11] -rw-r--r-- 1 boinc boinc      5633 May 17 14:13 queuedata.json
[2024-05-18 08:47:11] -rwx------ 1 boinc boinc     32251 May 17 14:14 runpilot2-wrapper.sh
[2024-05-18 08:47:11] -rw-r--r-- 1 boinc boinc       100 May 18 07:42 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-18 08:47:11] -rwxr-xr-x 1 boinc boinc      7986 May 18 07:42 run_atlas
[2024-05-18 08:47:11] -rw-r--r-- 1 boinc boinc       105 May 18 07:42 job.xml
[2024-05-18 08:47:11] -rw-r--r-- 2 boinc boinc 592245203 May 18 07:42 EVNT.38744251._000012.pool.root.1
[2024-05-18 08:47:11] -rw-r--r-- 1 boinc boinc      6627 May 18 07:42 init_data.xml
[2024-05-18 08:47:11] -rw-r--r-- 2 boinc boinc     17537 May 18 07:42 start_atlas.sh
[2024-05-18 08:47:11] drwxrwx--x 2 boinc boinc      4096 May 18 07:42 shared
[2024-05-18 08:47:11] -rw-r--r-- 2 boinc boinc    479972 May 18 07:42 input.tar.gz
[2024-05-18 08:47:11] -rw-r--r-- 1 boinc boinc         0 May 18 07:42 boinc_lockfile
[2024-05-18 08:47:11] -rw-r--r-- 1 boinc boinc      2517 May 18 07:42 pandaJob.out
[2024-05-18 08:47:11] -rw------- 1 boinc boinc       424 May 18 07:42 setup.sh.local
[2024-05-18 08:47:11] -rw------- 1 boinc boinc   1019426 May 18 07:42 agis_schedconf.cvmfs.json
[2024-05-18 08:47:11] -rw------- 1 boinc boinc         0 May 18 07:42 agis_ddmendpoints.agis.ALL.json
[2024-05-18 08:47:11] -rw------- 1 boinc boinc   1324701 May 18 07:42 cric_ddmendpoints.json
[2024-05-18 08:47:11] drwx------ 4 boinc boinc      4096 May 18 07:42 pilot3
[2024-05-18 08:47:11] -rw------- 1 boinc boinc 229990589 May 18 08:46 HITS.38744253._000755.pool.root.1
[2024-05-18 08:47:11] -rw-r--r-- 1 boinc boinc       531 May 18 08:46 boinc_task_state.xml
[2024-05-18 08:47:11] -rw------- 1 boinc boinc        95 May 18 08:46 pilot_heartbeat.json
[2024-05-18 08:47:11] -rw------- 1 boinc boinc      1050 May 18 08:46 memory_monitor_summary.json
[2024-05-18 08:47:11] -rw------- 1 boinc boinc    357778 May 18 08:46 log.38744253._000755.job.log.tgz.1
[2024-05-18 08:47:11] -rw------- 1 boinc boinc      7755 May 18 08:46 heartbeat.json
[2024-05-18 08:47:11] -rw-r--r-- 1 boinc boinc      8192 May 18 08:47 boinc_mmap_file
[2024-05-18 08:47:11] -rw-r--r-- 1 boinc boinc        27 May 18 08:47 wrapper_checkpoint.txt
[2024-05-18 08:47:11] -rw------- 1 boinc boinc      4333 May 18 08:47 pilotlog.txt
[2024-05-18 08:47:11] -rw------- 1 boinc boinc    392202 May 18 08:47 log.38744253._000755.job.log.1
[2024-05-18 08:47:11] -rw------- 1 boinc boinc       357 May 18 08:47 output.list
[2024-05-18 08:47:11] -rw-r--r-- 1 boinc boinc       620 May 18 08:47 runtime_log
[2024-05-18 08:47:11] -rw------- 1 boinc boinc    768000 May 18 08:47 result.tar.gz
[2024-05-18 08:47:11] -rw-r--r-- 1 boinc boinc     11286 May 18 08:47 runtime_log.err
[2024-05-18 08:47:11] -rw------- 1 boinc boinc       653 May 18 08:47 EliLDm54JS5nsSi4apGgGQJmABFKDmABFKDm4ySLDmoZRKDmZkhbqn.diag
[2024-05-18 08:47:11] -rw-r--r-- 1 boinc boinc     21467 May 18 08:47 stderr.txt
[2024-05-18 08:47:11] HITS file was successfully produced:
[2024-05-18 08:47:11] -rw------- 1 boinc boinc 229990589 May 18 08:46 shared/HITS.pool.root.1
[2024-05-18 08:47:11]  *** Contents of shared directory: ***
[2024-05-18 08:47:11] total 804224
[2024-05-18 08:47:11] -rw-r--r-- 2 boinc boinc 592245203 May 18 07:42 ATLAS.root_0
[2024-05-18 08:47:11] -rw-r--r-- 2 boinc boinc     17537 May 18 07:42 start_atlas.sh
[2024-05-18 08:47:11] -rw-r--r-- 2 boinc boinc    479972 May 18 07:42 input.tar.gz
[2024-05-18 08:47:11] -rw------- 1 boinc boinc 229990589 May 18 08:46 HITS.pool.root.1
[2024-05-18 08:47:11] -rw------- 1 boinc boinc    768000 May 18 08:47 result.tar.gz
08:47:13 (158229): run_atlas exited; CPU time 33657.631770
08:47:13 (158229): called boinc_finish(0)

</stderr_txt>
]]>

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