Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
00:09:48 (203478): wrapper (7.7.26015): starting
00:09:48 (203478): wrapper: running run_atlas (--nthreads 12)
[2024-05-18 00:09:48] Arguments: --nthreads 12
[2024-05-18 00:09:48] Threads: 12
[2024-05-18 00:09:48] Checking for CVMFS
[2024-05-18 00:09:49] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-18 00:09:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-18 00:09:49] Running cvmfs_config stat atlas.cern.ch
[2024-05-18 00:09:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-18 00:09:49] 2.10.1.0 2796 173342 185568 132870 1 595 28931369 45568001 10499 130560 0 1120792574 99.767 675972803 15178 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2024-05-18 00:09:49] CVMFS is ok
[2024-05-18 00:09:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-18 00:09:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-18 00:09:49] Further information can be found at the LHC@home message board.
[2024-05-18 00:09:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-18 00:09:49] Checking for apptainer binary...
[2024-05-18 00:09:49] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-18 00:09:49] Running /usr/bin/apptainer --version
[2024-05-18 00:09:49] apptainer version 1.1.8-1.el7
[2024-05-18 00:09:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-18 00:09:50] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0078.triumf.lcg
[2024-05-18 00:09:50] apptainer works
[2024-05-18 00:09:50] Set ATHENA_PROC_NUMBER=12
[2024-05-18 00:09:50] Set ATHENA_CORE_NUMBER=12
[2024-05-18 00:09:50] Starting ATLAS job with PandaID=6208359025
[2024-05-18 00:09:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-18 05:11:55]  *** The last 200 lines of the pilot log: ***
[2024-05-18 05:11:55] 2024-05-18 12:11:30,425 | INFO     |  -- lfn=log.38734053._008254.job.log.tgz.1, status_code=0, status=transferred
[2024-05-18 05:11:55] 2024-05-18 12:11:30,425 | INFO     | stage-out finished correctly
[2024-05-18 05:11:55] 2024-05-18 12:11:30,476 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-18 05:11:55] 2024-05-18 12:11:30,608 | INFO     | job 6208359025 has state=finished
[2024-05-18 05:11:55] 2024-05-18 12:11:30,608 | INFO     | preparing for final server update for job 6208359025 in state='finished'
[2024-05-18 05:11:55] 2024-05-18 12:11:30,609 | INFO     | this job has now completed (state=finished)
[2024-05-18 05:11:55] 2024-05-18 12:11:30,609 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-18 05:11:55] 2024-05-18 12:11:30,609 | INFO     | job 6208359025 has finished - writing final server update
[2024-05-18 05:11:55] 2024-05-18 12:11:30,609 | INFO     | total number of processed events: 1950 (read)
[2024-05-18 05:11:55] 2024-05-18 12:11:30,613 | INFO     | executing command: lscpu
[2024-05-18 05:11:55] 2024-05-18 12:11:30,672 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-18 05:11:55] 2024-05-18 12:11:30,672 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-18 05:11:55] 2024-05-18 12:11:30,720 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-18 05:11:55] 2024-05-18 12:11:34,220 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-18 05:11:55] 2024-05-18 12:11:34,221 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6208359025/memory_monitor_summary.json (trf name=prmon)
[2024-05-18 05:11:55] 2024-05-18 12:11:34,228 | INFO     | extracted standard info from prmon json
[2024-05-18 05:11:55] 2024-05-18 12:11:34,229 | INFO     | extracted standard memory fields from prmon json
[2024-05-18 05:11:55] 2024-05-18 12:11:34,229 | WARNING  | GPU info not found in prmon json
[2024-05-18 05:11:55] 2024-05-18 12:11:34,238 | INFO     | fitting pss+swap vs Time
[2024-05-18 05:11:55] 2024-05-18 12:11:34,238 | INFO     | model: linear, x: [1716016227.0, 1716016288.0, 1716016349.0, 1716016410.0, 1716016471.0, 1716016532.0, 1716016593.0, 1716016654.0, 1716016715.0, 1716016776.0, 1716
[2024-05-18 05:11:55] 2024-05-18 12:11:34,238 | INFO     | sum of square deviations: 8123493708.0
[2024-05-18 05:11:55] 2024-05-18 12:11:34,242 | INFO     | sum of deviations: 678277258337.0
[2024-05-18 05:11:55] 2024-05-18 12:11:34,242 | INFO     | mean x: 1716025255.0
[2024-05-18 05:11:55] 2024-05-18 12:11:34,242 | INFO     | mean y: 3659647.1144781145
[2024-05-18 05:11:55] 2024-05-18 12:11:34,242 | INFO     | -- intersect: -143277168409.93256
[2024-05-18 05:11:55] 2024-05-18 12:11:34,242 | INFO     | intersect: -143277168409.93256
[2024-05-18 05:11:55] 2024-05-18 12:11:34,243 | INFO     | chi2: 26.05389917131413
[2024-05-18 05:11:55] 2024-05-18 12:11:34,243 | INFO     | model: linear, x: [1716016227.0, 1716016288.0, 1716016349.0, 1716016410.0, 1716016471.0, 1716016532.0, 1716016593.0, 1716016654.0, 1716016715.0, 1716016776.0, 1716
[2024-05-18 05:11:55] 2024-05-18 12:11:34,243 | INFO     | sum of square deviations: 7720081493.0
[2024-05-18 05:11:55] 2024-05-18 12:11:34,246 | INFO     | sum of deviations: 815434098740.5
[2024-05-18 05:11:55] 2024-05-18 12:11:34,246 | INFO     | mean x: 1716025102.5
[2024-05-18 05:11:55] 2024-05-18 12:11:34,247 | INFO     | mean y: 3711468.729452055
[2024-05-18 05:11:55] 2024-05-18 12:11:34,247 | INFO     | -- intersect: -181251549132.07486
[2024-05-18 05:11:55] 2024-05-18 12:11:34,247 | INFO     | intersect: -181251549132.07486
[2024-05-18 05:11:55] 2024-05-18 12:11:34,247 | INFO     | chi2: 22.02321254785997
[2024-05-18 05:11:55] 2024-05-18 12:11:34,247 | INFO     | current chi2=22.02321254785997 (change=15.470569671552372 %)
[2024-05-18 05:11:55] 2024-05-18 12:11:34,247 | INFO     | right removable region: 291
[2024-05-18 05:11:55] 2024-05-18 12:11:34,248 | INFO     | model: linear, x: [1716016532.0, 1716016593.0, 1716016654.0, 1716016715.0, 1716016776.0, 1716016837.0, 1716016898.0, 1716016959.0, 1716017020.0, 1716017081.0, 1716
[2024-05-18 05:11:55] 2024-05-18 12:11:34,248 | INFO     | sum of square deviations: 7720081493.0
[2024-05-18 05:11:55] 2024-05-18 12:11:34,251 | INFO     | sum of deviations: 540869812182.49976
[2024-05-18 05:11:55] 2024-05-18 12:11:34,251 | INFO     | mean x: 1716025407.5
[2024-05-18 05:11:55] 2024-05-18 12:11:34,251 | INFO     | mean y: 3711555.585616438
[2024-05-18 05:11:55] 2024-05-18 12:11:34,251 | INFO     | -- intersect: -120221229165.11754
[2024-05-18 05:11:55] 2024-05-18 12:11:34,251 | INFO     | intersect: -120221229165.11754
[2024-05-18 05:11:55] 2024-05-18 12:11:34,252 | INFO     | chi2: 22.15024851689634
[2024-05-18 05:11:55] 2024-05-18 12:11:34,252 | INFO     | current chi2=22.15024851689634 (change=14.982980584786276 %)
[2024-05-18 05:11:55] 2024-05-18 12:11:34,252 | INFO     | left removable region: 10
[2024-05-18 05:11:55] 2024-05-18 12:11:34,252 | INFO     | model: linear, x: [1716016837.0, 1716016898.0, 1716016959.0, 1716017020.0, 1716017081.0, 1716017142.0, 1716017203.0, 1716017264.0, 1716017325.0, 1716017386.0, 1716
[2024-05-18 05:11:55] 2024-05-18 12:11:34,253 | INFO     | sum of square deviations: 6880054580.0
[2024-05-18 05:11:55] 2024-05-18 12:11:34,255 | INFO     | sum of deviations: 575781813564.0001
[2024-05-18 05:11:55] 2024-05-18 12:11:34,255 | INFO     | mean x: 1716025377.0
[2024-05-18 05:11:55] 2024-05-18 12:11:34,255 | INFO     | mean y: 3828277.508896797
[2024-05-18 05:11:55] 2024-05-18 12:11:34,255 | INFO     | -- intersect: -143607852734.89767
[2024-05-18 05:11:55] 2024-05-18 12:11:34,256 | INFO     | intersect: -143607852734.89767
[2024-05-18 05:11:55] 2024-05-18 12:11:34,256 | INFO     | chi2: 14.12214865712328
[2024-05-18 05:11:55] 2024-05-18 12:11:34,256 | INFO     | -- intersect: -143607852734.89767
[2024-05-18 05:11:55] 2024-05-18 12:11:34,256 | INFO     | current memory leak: 83.69 B/s (using 281 data points, chi2=14.12)
[2024-05-18 05:11:55] 2024-05-18 12:11:34,257 | INFO     | ..............................
[2024-05-18 05:11:55] 2024-05-18 12:11:34,257 | INFO     | . Timing measurements:
[2024-05-18 05:11:55] 2024-05-18 12:11:34,257 | INFO     | . get job = 0 s
[2024-05-18 05:11:55] 2024-05-18 12:11:34,257 | INFO     | . initial setup = 1 s
[2024-05-18 05:11:55] 2024-05-18 12:11:34,257 | INFO     | . payload setup = 8 s
[2024-05-18 05:11:55] 2024-05-18 12:11:34,257 | INFO     | . stage-in = 0 s
[2024-05-18 05:11:55] 2024-05-18 12:11:34,257 | INFO     | . payload execution = 18060 s
[2024-05-18 05:11:55] 2024-05-18 12:11:34,258 | INFO     | . stage-out = 3 s
[2024-05-18 05:11:55] 2024-05-18 12:11:34,258 | INFO     | . log creation = 0 s
[2024-05-18 05:11:55] 2024-05-18 12:11:34,258 | INFO     | ..............................
[2024-05-18 05:11:55] 2024-05-18 12:11:34,346 | INFO     | 
[2024-05-18 05:11:55] 2024-05-18 12:11:34,347 | INFO     | job summary report
[2024-05-18 05:11:55] 2024-05-18 12:11:34,348 | INFO     | --------------------------------------------------
[2024-05-18 05:11:55] 2024-05-18 12:11:34,348 | INFO     | PanDA job id: 6208359025
[2024-05-18 05:11:55] 2024-05-18 12:11:34,348 | INFO     | task id: 38734053
[2024-05-18 05:11:55] 2024-05-18 12:11:34,348 | INFO     | errors: (none)
[2024-05-18 05:11:55] 2024-05-18 12:11:34,348 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-18 05:11:55] 2024-05-18 12:11:34,348 | INFO     | pilot state: finished 
[2024-05-18 05:11:55] 2024-05-18 12:11:34,348 | INFO     | transexitcode: 0
[2024-05-18 05:11:55] 2024-05-18 12:11:34,348 | INFO     | exeerrorcode: 0
[2024-05-18 05:11:55] 2024-05-18 12:11:34,348 | INFO     | exeerrordiag: 
[2024-05-18 05:11:55] 2024-05-18 12:11:34,348 | INFO     | exitcode: 0
[2024-05-18 05:11:55] 2024-05-18 12:11:34,348 | INFO     | exitmsg: OK
[2024-05-18 05:11:55] 2024-05-18 12:11:34,349 | INFO     | cpuconsumptiontime: 188080 s
[2024-05-18 05:11:55] 2024-05-18 12:11:34,349 | INFO     | nevents: 1950
[2024-05-18 05:11:55] 2024-05-18 12:11:34,349 | INFO     | neventsw: 0
[2024-05-18 05:11:55] 2024-05-18 12:11:34,349 | INFO     | pid: 222441
[2024-05-18 05:11:55] 2024-05-18 12:11:34,349 | INFO     | pgrp: 222441
[2024-05-18 05:11:55] 2024-05-18 12:11:34,349 | INFO     | corecount: 12
[2024-05-18 05:11:55] 2024-05-18 12:11:34,349 | INFO     | event service: False
[2024-05-18 05:11:55] 2024-05-18 12:11:34,349 | INFO     | sizes: {0: 2392586, 4: 2392792, 11: 2392820, 18073: 2445079, 18077: 2454089, 18081: 2454255}
[2024-05-18 05:11:55] 2024-05-18 12:11:34,349 | INFO     | --------------------------------------------------
[2024-05-18 05:11:55] 2024-05-18 12:11:34,349 | INFO     | 
[2024-05-18 05:11:55] 2024-05-18 12:11:34,350 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-18 05:11:55] 2024-05-18 12:11:34,417 | WARNING  | process 222441 is no longer using CPU - aborting
[2024-05-18 05:11:55] 2024-05-18 12:11:34,418 | INFO     | aborting job monitoring since job object (job id=6208359025) has expired
[2024-05-18 05:11:55] 2024-05-18 12:11:34,444 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-18 05:11:55] 2024-05-18 12:11:34,444 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-18 05:11:55] 2024-05-18 12:11:34,445 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-18 05:11:55] 2024-05-18 12:11:34,445 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-18 05:11:55] 2024-05-18 12:11:34,445 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-18 05:11:55] 2024-05-18 12:11:34,445 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-18 05:11:55] 2024-05-18 12:11:34,445 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-18 05:11:55] 2024-05-18 12:11:34,445 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-18 05:11:55] 2024-05-18 12:11:34,445 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-18 05:11:55] 2024-05-18 12:11:34,445 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-18 05:11:55] 2024-05-18 12:11:34,445 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-18 05:11:55] 2024-05-18 12:11:34,445 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-18 05:11:55] 2024-05-18 12:11:34,446 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-18 05:11:55] 2024-05-18 12:11:34,446 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-18 05:11:55] 2024-05-18 12:11:34,446 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-18 05:11:55] 2024-05-18 12:11:34,446 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-18 05:11:55] 2024-05-18 12:11:34,446 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-18 05:11:55] 2024-05-18 12:11:34,446 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-18 05:11:55] 2024-05-18 12:11:34,446 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-18 05:11:55] 2024-05-18 12:11:34,446 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-18 05:11:55] 2024-05-18 12:11:34,446 | INFO     | job 6208359025 has completed (purged errors)
[2024-05-18 05:11:55] 2024-05-18 12:11:34,447 | INFO     | overall cleanup function is called
[2024-05-18 05:11:55] 2024-05-18 12:11:35,471 | INFO     | --- collectZombieJob: --- 10, [222441]
[2024-05-18 05:11:55] 2024-05-18 12:11:35,471 | INFO     | zombie collector waiting for pid 222441
[2024-05-18 05:11:55] 2024-05-18 12:11:35,471 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-18 05:11:55] 2024-05-18 12:11:36,476 | INFO     | collected zombie processes
[2024-05-18 05:11:55] 2024-05-18 12:11:36,477 | INFO     | will now attempt to kill all subprocesses of pid=222441
[2024-05-18 05:11:55] 2024-05-18 12:11:36,676 | INFO     | process IDs to be killed: [222441] (in reverse order)
[2024-05-18 05:11:55] 2024-05-18 12:11:36,795 | WARNING  | found no corresponding commands to process id(s)
[2024-05-18 05:11:55] 2024-05-18 12:11:36,795 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-18 05:11:55] 2024-05-18 12:11:36,802 | INFO     | did not find any defunct processes belonging to 222441
[2024-05-18 05:11:55] 2024-05-18 12:11:36,809 | INFO     | did not find any defunct processes belonging to 222441
[2024-05-18 05:11:55] 2024-05-18 12:11:36,809 | INFO     | ready for new job
[2024-05-18 05:11:55] 2024-05-18 12:11:36,809 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-18 05:11:55] 2024-05-18 12:11:36,811 | INFO     | *************************************
[2024-05-18 05:11:55] 2024-05-18 12:11:36,811 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-18 05:11:55] 2024-05-18 12:11:36,811 | INFO     | *************************************
[2024-05-18 05:11:55] 2024-05-18 12:11:36,811 | INFO     | 
[2024-05-18 05:11:55] 2024-05-18 12:11:36,813 | INFO     | architecture information:
[2024-05-18 05:11:55] 2024-05-18 12:11:36,814 | INFO     | executing command: cat /etc/os-release
[2024-05-18 05:11:55] 2024-05-18 12:11:36,830 | INFO     | cat /etc/os-release:
[2024-05-18 05:11:55] NAME="CentOS Linux"
[2024-05-18 05:11:55] VERSION="7 (Core)"
[2024-05-18 05:11:55] ID="centos"
[2024-05-18 05:11:55] ID_LIKE="rhel fedora"
[2024-05-18 05:11:55] VERSION_ID="7"
[2024-05-18 05:11:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-18 05:11:55] ANSI_COLOR="0;31"
[2024-05-18 05:11:55] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-18 05:11:55] HOME_URL="https://www.centos.org/"
[2024-05-18 05:11:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-18 05:11:55] 
[2024-05-18 05:11:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-18 05:11:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-18 05:11:55] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-18 05:11:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-18 05:11:55] 
[2024-05-18 05:11:55] 2024-05-18 12:11:36,830 | INFO     | *************************************
[2024-05-18 05:11:55] 2024-05-18 12:11:37,332 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-18 05:11:55] 2024-05-18 12:11:37,354 | INFO     | sufficient remaining disk space (2055423918080 B)
[2024-05-18 05:11:55] 2024-05-18 12:11:37,355 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-18 05:11:55] 2024-05-18 12:11:37,355 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-18 05:11:55] 2024-05-18 12:11:37,355 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-18 05:11:55] 2024-05-18 12:11:37,580 | INFO     | all data control threads have been joined
[2024-05-18 05:11:55] 2024-05-18 12:11:37,926 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-18 05:11:55] 2024-05-18 12:11:37,926 | INFO     | aborting loop
[2024-05-18 05:11:55] 2024-05-18 12:11:38,212 | INFO     | found 0 job(s) in 20 queues
[2024-05-18 05:11:55] 2024-05-18 12:11:38,212 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-18 05:11:55] 2024-05-18 12:11:38,212 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-18 05:11:55] 2024-05-18 12:11:38,360 | INFO     | [job] retrieve thread has finished
[2024-05-18 05:11:55] 2024-05-18 12:11:38,433 | INFO     | [payload] validate_pre thread has finished
[2024-05-18 05:11:55] 2024-05-18 12:11:38,485 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-18 05:11:55] 2024-05-18 12:11:38,582 | INFO     | [data] control thread has finished
[2024-05-18 05:11:55] 2024-05-18 12:11:38,727 | INFO     | [payload] validate_post thread has finished
[2024-05-18 05:11:55] 2024-05-18 12:11:38,810 | INFO     | all payload control threads have been joined
[2024-05-18 05:11:55] 2024-05-18 12:11:38,928 | INFO     | [job] job monitor thread has finished
[2024-05-18 05:11:55] 2024-05-18 12:11:39,037 | INFO     | all job control threads have been joined
[2024-05-18 05:11:55] 2024-05-18 12:11:39,077 | INFO     | [job] validate thread has finished
[2024-05-18 05:11:55] 2024-05-18 12:11:39,192 | INFO     | [data] copytool_in thread has finished
[2024-05-18 05:11:55] 2024-05-18 12:11:39,221 | INFO     | [payload] failed_post thread has finished
[2024-05-18 05:11:55] 2024-05-18 12:11:39,357 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-18 05:11:55] 2024-05-18 12:11:39,461 | INFO     | [payload] execute_payloads thread has finished
[2024-05-18 05:11:55] 2024-05-18 12:11:39,581 | INFO     | [job] create_data_payload thread has finished
[2024-05-18 05:11:55] 2024-05-18 12:11:39,815 | INFO     | [payload] control thread has finished
[2024-05-18 05:11:55] 2024-05-18 12:11:40,042 | INFO     | [job] control thread has finished
[2024-05-18 05:11:55] 2024-05-18 12:11:40,362 | INFO     | [job] queue monitor thread has finished
[2024-05-18 05:11:55] 2024-05-18 12:11:40,490 | INFO     | [data] copytool_out thread has finished
[2024-05-18 05:11:55] 2024-05-18 12:11:41,361 | INFO     | [data] queue_monitor thread has finished
[2024-05-18 05:11:55] 2024-05-18 12:11:48,158 | INFO     | job.realtimelogging is not enabled
[2024-05-18 05:11:55] 2024-05-18 12:11:49,160 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-18 05:11:55] 2024-05-18 12:11:49,647 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139999214085952)>', '<ExcThread(monitor, started 139998804301568)>']
[2024-05-18 05:11:55] 2024-05-18 12:11:50,260 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-18 05:11:55] 2024-05-18 12:11:50,260 | INFO     | [monitor] control thread has ended
[2024-05-18 05:11:55] 2024-05-18 12:11:54,672 | INFO     | all workflow threads have been joined
[2024-05-18 05:11:55] 2024-05-18 12:11:54,672 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-18 05:11:55] 2024-05-18 12:11:54,672 | INFO     | traces error code: 0
[2024-05-18 05:11:55] 2024-05-18 12:11:54,672 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-18 05:11:55] 2024-05-18 12:11:54,740 [wrapper] ==== pilot stdout END ====
[2024-05-18 05:11:55] 2024-05-18 12:11:54,742 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-18 05:11:55] 2024-05-18 12:11:54,745 [wrapper] pilotpid: 214917
[2024-05-18 05:11:55] 2024-05-18 12:11:54,747 [wrapper] Pilot exit status: 0
[2024-05-18 05:11:55] 2024-05-18 12:11:54,755 [wrapper] pandaids: 6208359025
[2024-05-18 05:11:55] 2024-05-18 12:11:54,814 [wrapper] cleanup: SIGTERM to supervisor_pilot  49441 214918
[2024-05-18 05:11:55] 2024-05-18 12:11:54,818 [wrapper] Test setup, not cleaning
[2024-05-18 05:11:55] 2024-05-18 12:11:54,823 [wrapper] ==== wrapper stdout END ====
[2024-05-18 05:11:55] 2024-05-18 12:11:54,826 [wrapper] ==== wrapper stderr END ====
[2024-05-18 05:11:55] 2024-05-18 12:11:54,833 [wrapper] apfmon messages muted
[2024-05-18 05:11:55]  *** Error codes and diagnostics ***
[2024-05-18 05:11:55]     "exeErrorCode": 0,
[2024-05-18 05:11:55]     "exeErrorDiag": "",
[2024-05-18 05:11:55]     "pilotErrorCode": 0,
[2024-05-18 05:11:55]     "pilotErrorDiag": "",
[2024-05-18 05:11:55]  *** Listing of results directory ***
[2024-05-18 05:11:55] total 1496084
[2024-05-18 05:11:55] -rw-r--r-- 1 boinc boinc     467845 May 17 13:55 pilot3.tar.gz
[2024-05-18 05:11:55] -rw-r--r-- 1 boinc boinc       5633 May 17 14:07 queuedata.json
[2024-05-18 05:11:55] -rwx------ 1 boinc boinc      32251 May 17 14:09 runpilot2-wrapper.sh
[2024-05-18 05:11:55] -rw-r--r-- 1 boinc boinc        100 May 18 00:09 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-18 05:11:55] -rwxr-xr-x 1 boinc boinc       7986 May 18 00:09 run_atlas
[2024-05-18 05:11:55] -rw-r--r-- 1 boinc boinc        105 May 18 00:09 job.xml
[2024-05-18 05:11:55] -rw-r--r-- 2 boinc boinc     480172 May 18 00:09 input.tar.gz
[2024-05-18 05:11:55] -rw-r--r-- 1 boinc boinc       6626 May 18 00:09 init_data.xml
[2024-05-18 05:11:55] -rw-r--r-- 2 boinc boinc  328108500 May 18 00:09 EVNT.38734051._000726.pool.root.1
[2024-05-18 05:11:55] -rw-r--r-- 2 boinc boinc      17537 May 18 00:09 start_atlas.sh
[2024-05-18 05:11:55] drwxrwx--x 2 boinc boinc       4096 May 18 00:09 shared
[2024-05-18 05:11:55] -rw-r--r-- 1 boinc boinc          0 May 18 00:09 boinc_lockfile
[2024-05-18 05:11:55] -rw-r--r-- 1 boinc boinc       2852 May 18 00:09 pandaJob.out
[2024-05-18 05:11:55] -rw------- 1 boinc boinc        424 May 18 00:09 setup.sh.local
[2024-05-18 05:11:55] -rw------- 1 boinc boinc    1019065 May 18 00:09 agis_schedconf.cvmfs.json
[2024-05-18 05:11:55] -rw------- 1 boinc boinc    1324701 May 18 00:09 cric_ddmendpoints.json
[2024-05-18 05:11:55] drwx------ 4 boinc boinc       4096 May 18 00:09 pilot3
[2024-05-18 05:11:55] -rw-r--r-- 1 boinc boinc        532 May 18 05:00 boinc_task_state.xml
[2024-05-18 05:11:55] -rw------- 1 boinc boinc 1191948487 May 18 05:11 HITS.38734053._008254.pool.root.1
[2024-05-18 05:11:55] -rw------- 1 boinc boinc       1072 May 18 05:11 memory_monitor_summary.json
[2024-05-18 05:11:55] -rw------- 1 boinc boinc          0 May 18 05:11 agis_ddmendpoints.agis.ALL.json
[2024-05-18 05:11:55] -rw------- 1 boinc boinc    2350948 May 18 05:11 log.38734053._008254.job.log.tgz.1
[2024-05-18 05:11:55] -rw------- 1 boinc boinc      27751 May 18 05:11 heartbeat.json
[2024-05-18 05:11:55] -rw------- 1 boinc boinc         95 May 18 05:11 pilot_heartbeat.json
[2024-05-18 05:11:55] -rw-r--r-- 1 boinc boinc         29 May 18 05:11 wrapper_checkpoint.txt
[2024-05-18 05:11:55] -rw-r--r-- 1 boinc boinc       8192 May 18 05:11 boinc_mmap_file
[2024-05-18 05:11:55] -rw------- 1 boinc boinc       4282 May 18 05:11 pilotlog.txt
[2024-05-18 05:11:55] -rw------- 1 boinc boinc    1831544 May 18 05:11 log.38734053._008254.job.log.1
[2024-05-18 05:11:55] -rw------- 1 boinc boinc        353 May 18 05:11 output.list
[2024-05-18 05:11:55] -rw-r--r-- 1 boinc boinc        620 May 18 05:11 runtime_log
[2024-05-18 05:11:55] -rw------- 1 boinc boinc    4218880 May 18 05:11 result.tar.gz
[2024-05-18 05:11:55] -rw-r--r-- 1 boinc boinc      11287 May 18 05:11 runtime_log.err
[2024-05-18 05:11:55] -rw------- 1 boinc boinc        661 May 18 05:11 7qrNDma0JS5nsSi4apGgGQJmABFKDmABFKDm4ySLDmLZRKDmM5VCnm.diag
[2024-05-18 05:11:55] -rw-r--r-- 1 boinc boinc      22041 May 18 05:11 stderr.txt
[2024-05-18 05:11:55] HITS file was successfully produced:
[2024-05-18 05:11:55] -rw------- 1 boinc boinc 1191948487 May 18 05:11 shared/HITS.pool.root.1
[2024-05-18 05:11:55]  *** Contents of shared directory: ***
[2024-05-18 05:11:55] total 1489052
[2024-05-18 05:11:55] -rw-r--r-- 2 boinc boinc     480172 May 18 00:09 input.tar.gz
[2024-05-18 05:11:55] -rw-r--r-- 2 boinc boinc  328108500 May 18 00:09 ATLAS.root_0
[2024-05-18 05:11:55] -rw-r--r-- 2 boinc boinc      17537 May 18 00:09 start_atlas.sh
[2024-05-18 05:11:55] -rw------- 1 boinc boinc 1191948487 May 18 05:11 HITS.pool.root.1
[2024-05-18 05:11:55] -rw------- 1 boinc boinc    4218880 May 18 05:11 result.tar.gz
05:11:57 (203478): run_atlas exited; CPU time 186758.079544
05:11:57 (203478): called boinc_finish(0)

</stderr_txt>
]]>

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