Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
20:52:14 (199316): wrapper (7.7.26015): starting
20:52:14 (199316): wrapper: running run_atlas (--nthreads 12)
[2024-05-17 20:52:14] Arguments: --nthreads 12
[2024-05-17 20:52:14] Threads: 12
[2024-05-17 20:52:14] Checking for CVMFS
[2024-05-17 20:52:14] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-17 20:52:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-17 20:52:14] Running cvmfs_config stat atlas.cern.ch
[2024-05-17 20:52:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-17 20:52:14] 2.10.1.0 2741 173144 190768 132865 3 219 42708496 45568001 12539 130560 0 1156026778 99.772 690787992 16116 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2024-05-17 20:52:14] CVMFS is ok
[2024-05-17 20:52:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-17 20:52:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-17 20:52:14] Further information can be found at the LHC@home message board.
[2024-05-17 20:52:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-17 20:52:14] Checking for apptainer binary...
[2024-05-17 20:52:14] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-17 20:52:14] Running /usr/bin/apptainer --version
[2024-05-17 20:52:15] apptainer version 1.1.8-1.el7
[2024-05-17 20:52:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-17 20:52:15] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0079.triumf.lcg
[2024-05-17 20:52:15] apptainer works
[2024-05-17 20:52:15] Set ATHENA_PROC_NUMBER=12
[2024-05-17 20:52:15] Set ATHENA_CORE_NUMBER=12
[2024-05-17 20:52:15] Starting ATLAS job with PandaID=6208344543
[2024-05-17 20:52:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-17 22:35:31]  *** The last 200 lines of the pilot log: ***
[2024-05-17 22:35:31] 2024-05-18 05:35:12,897 | INFO     | intersect: -273136658063.32483
[2024-05-17 22:35:31] 2024-05-18 05:35:12,897 | INFO     | chi2: 5.350703637354476
[2024-05-17 22:35:31] 2024-05-18 05:35:12,897 | INFO     | model: linear, x: [1716004370.0, 1716004431.0, 1716004492.0, 1716004553.0, 1716004614.0, 1716004675.0, 1716004736.0, 1716004797.0, 1716004858.0, 1716004919.0, 1716
[2024-05-17 22:35:31] 2024-05-18 05:35:12,897 | INFO     | sum of square deviations: 274312120.0
[2024-05-17 22:35:31] 2024-05-18 05:35:12,898 | INFO     | sum of deviations: 55540613307.5
[2024-05-17 22:35:31] 2024-05-18 05:35:12,898 | INFO     | mean x: 1716007267.5
[2024-05-17 22:35:31] 2024-05-18 05:35:12,898 | INFO     | mean y: 2551684.96875
[2024-05-17 22:35:31] 2024-05-18 05:35:12,899 | INFO     | -- intersect: -347441433207.413
[2024-05-17 22:35:31] 2024-05-18 05:35:12,899 | INFO     | intersect: -347441433207.413
[2024-05-17 22:35:31] 2024-05-18 05:35:12,899 | INFO     | chi2: 4.402784903197166
[2024-05-17 22:35:31] 2024-05-18 05:35:12,899 | INFO     | current chi2=4.402784903197166 (change=17.715777183764654 %)
[2024-05-17 22:35:31] 2024-05-18 05:35:12,899 | INFO     | right removable region: 95
[2024-05-17 22:35:31] 2024-05-18 05:35:12,899 | INFO     | model: linear, x: [1716004675.0, 1716004736.0, 1716004797.0, 1716004858.0, 1716004919.0, 1716004980.0, 1716005041.0, 1716005102.0, 1716005163.0, 1716005224.0, 1716
[2024-05-17 22:35:31] 2024-05-18 05:35:12,900 | INFO     | sum of square deviations: 274312120.0
[2024-05-17 22:35:31] 2024-05-18 05:35:12,900 | INFO     | sum of deviations: 24860929542.0
[2024-05-17 22:35:31] 2024-05-18 05:35:12,900 | INFO     | mean x: 1716007572.5
[2024-05-17 22:35:31] 2024-05-18 05:35:12,900 | INFO     | mean y: 2624295.2708333335
[2024-05-17 22:35:31] 2024-05-18 05:35:12,901 | INFO     | -- intersect: -155519280290.86615
[2024-05-17 22:35:31] 2024-05-18 05:35:12,901 | INFO     | intersect: -155519280290.86615
[2024-05-17 22:35:31] 2024-05-18 05:35:12,901 | INFO     | chi2: 2.9402499934853963
[2024-05-17 22:35:31] 2024-05-18 05:35:12,901 | INFO     | current chi2=2.9402499934853963 (change=45.04928336978254 %)
[2024-05-17 22:35:31] 2024-05-18 05:35:12,901 | INFO     | model: linear, x: [1716004980.0, 1716005041.0, 1716005102.0, 1716005163.0, 1716005224.0, 1716005285.0, 1716005346.0, 1716005407.0, 1716005468.0, 1716005529.0, 1716
[2024-05-17 22:35:31] 2024-05-18 05:35:12,901 | INFO     | sum of square deviations: 233641590.0
[2024-05-17 22:35:31] 2024-05-18 05:35:12,902 | INFO     | sum of deviations: 4869295720.000001
[2024-05-17 22:35:31] 2024-05-18 05:35:12,902 | INFO     | mean x: 1716007725.0
[2024-05-17 22:35:31] 2024-05-18 05:35:12,902 | INFO     | mean y: 2699310.5164835164
[2024-05-17 22:35:31] 2024-05-18 05:35:12,902 | INFO     | -- intersect: -35760407210.15665
[2024-05-17 22:35:31] 2024-05-18 05:35:12,902 | INFO     | intersect: -35760407210.15665
[2024-05-17 22:35:31] 2024-05-18 05:35:12,903 | INFO     | chi2: 1.5882126692308898
[2024-05-17 22:35:31] 2024-05-18 05:35:12,903 | INFO     | current chi2=1.5882126692308898 (change=45.983754009018476 %)
[2024-05-17 22:35:31] 2024-05-18 05:35:12,903 | INFO     | model: linear, x: [1716005285.0, 1716005346.0, 1716005407.0, 1716005468.0, 1716005529.0, 1716005590.0, 1716005651.0, 1716005712.0, 1716005773.0, 1716005834.0, 1716
[2024-05-17 22:35:31] 2024-05-18 05:35:12,903 | INFO     | sum of square deviations: 197203697.5
[2024-05-17 22:35:31] 2024-05-18 05:35:12,904 | INFO     | sum of deviations: -6398254955.5
[2024-05-17 22:35:31] 2024-05-18 05:35:12,904 | INFO     | mean x: 1716007877.5
[2024-05-17 22:35:31] 2024-05-18 05:35:12,904 | INFO     | mean y: 2745636.523255814
[2024-05-17 22:35:31] 2024-05-18 05:35:12,904 | INFO     | -- intersect: 55678455803.62806
[2024-05-17 22:35:31] 2024-05-18 05:35:12,904 | INFO     | intersect: 55678455803.62806
[2024-05-17 22:35:31] 2024-05-18 05:35:12,904 | INFO     | chi2: 0.9595294347178194
[2024-05-17 22:35:31] 2024-05-18 05:35:12,904 | INFO     | current chi2=0.9595294347178194 (change=39.584323100603235 %)
[2024-05-17 22:35:31] 2024-05-18 05:35:12,905 | INFO     | model: linear, x: [1716005590.0, 1716005651.0, 1716005712.0, 1716005773.0, 1716005834.0, 1716005895.0, 1716005956.0, 1716006017.0, 1716006078.0, 1716006139.0, 1716
[2024-05-17 22:35:31] 2024-05-18 05:35:12,905 | INFO     | sum of square deviations: 164765880.0
[2024-05-17 22:35:31] 2024-05-18 05:35:12,905 | INFO     | sum of deviations: -5698994113.0
[2024-05-17 22:35:31] 2024-05-18 05:35:12,905 | INFO     | mean x: 1716008030.0
[2024-05-17 22:35:31] 2024-05-18 05:35:12,905 | INFO     | mean y: 2742185.3333333335
[2024-05-17 22:35:31] 2024-05-18 05:35:12,906 | INFO     | -- intersect: 59356776290.153625
[2024-05-17 22:35:31] 2024-05-18 05:35:12,906 | INFO     | intersect: 59356776290.153625
[2024-05-17 22:35:31] 2024-05-18 05:35:12,906 | INFO     | chi2: 0.9337007828669538
[2024-05-17 22:35:31] 2024-05-18 05:35:12,906 | INFO     | current chi2=0.9337007828669538 (change=2.6918040152109906 %)
[2024-05-17 22:35:31] 2024-05-18 05:35:12,906 | INFO     | left removable region: 40
[2024-05-17 22:35:31] 2024-05-18 05:35:12,906 | INFO     | model: linear, x: [1716006810.0, 1716006871.0, 1716006932.0, 1716006993.0, 1716007054.0, 1716007115.0, 1716007176.0, 1716007237.0, 1716007298.0, 1716007359.0, 1716
[2024-05-17 22:35:31] 2024-05-18 05:35:12,906 | INFO     | sum of square deviations: 51573060.0
[2024-05-17 22:35:31] 2024-05-18 05:35:12,907 | INFO     | sum of deviations: 37412398.00000001
[2024-05-17 22:35:31] 2024-05-18 05:35:12,907 | INFO     | mean x: 1716008457.0
[2024-05-17 22:35:31] 2024-05-18 05:35:12,907 | INFO     | mean y: 2778527.890909091
[2024-05-17 22:35:31] 2024-05-18 05:35:12,907 | INFO     | -- intersect: -1242057271.3548577
[2024-05-17 22:35:31] 2024-05-18 05:35:12,907 | INFO     | intersect: -1242057271.3548577
[2024-05-17 22:35:31] 2024-05-18 05:35:12,907 | INFO     | chi2: 4.111070751727303e-05
[2024-05-17 22:35:31] 2024-05-18 05:35:12,908 | INFO     | -- intersect: -1242057271.3548577
[2024-05-17 22:35:31] 2024-05-18 05:35:12,908 | INFO     | current memory leak: 0.73 B/s (using 55 data points, chi2=0.00)
[2024-05-17 22:35:31] 2024-05-18 05:35:12,908 | INFO     | ..............................
[2024-05-17 22:35:31] 2024-05-18 05:35:12,908 | INFO     | . Timing measurements:
[2024-05-17 22:35:31] 2024-05-18 05:35:12,908 | INFO     | . get job = 0 s
[2024-05-17 22:35:31] 2024-05-18 05:35:12,909 | INFO     | . initial setup = 2 s
[2024-05-17 22:35:31] 2024-05-18 05:35:12,909 | INFO     | . payload setup = 5 s
[2024-05-17 22:35:31] 2024-05-18 05:35:12,909 | INFO     | . stage-in = 0 s
[2024-05-17 22:35:31] 2024-05-18 05:35:12,909 | INFO     | . payload execution = 6135 s
[2024-05-17 22:35:31] 2024-05-18 05:35:12,909 | INFO     | . stage-out = 0 s
[2024-05-17 22:35:31] 2024-05-18 05:35:12,909 | INFO     | . log creation = 0 s
[2024-05-17 22:35:31] 2024-05-18 05:35:12,909 | INFO     | ..............................
[2024-05-17 22:35:31] 2024-05-18 05:35:13,206 | INFO     | 
[2024-05-17 22:35:31] 2024-05-18 05:35:13,206 | INFO     | job summary report
[2024-05-17 22:35:31] 2024-05-18 05:35:13,206 | INFO     | --------------------------------------------------
[2024-05-17 22:35:31] 2024-05-18 05:35:13,206 | INFO     | PanDA job id: 6208344543
[2024-05-17 22:35:31] 2024-05-18 05:35:13,206 | INFO     | task id: 38920987
[2024-05-17 22:35:31] 2024-05-18 05:35:13,207 | INFO     | errors: (none)
[2024-05-17 22:35:31] 2024-05-18 05:35:13,207 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-17 22:35:31] 2024-05-18 05:35:13,207 | INFO     | pilot state: finished 
[2024-05-17 22:35:31] 2024-05-18 05:35:13,207 | INFO     | transexitcode: 0
[2024-05-17 22:35:31] 2024-05-18 05:35:13,207 | INFO     | exeerrorcode: 0
[2024-05-17 22:35:31] 2024-05-18 05:35:13,207 | INFO     | exeerrordiag: 
[2024-05-17 22:35:31] 2024-05-18 05:35:13,207 | INFO     | exitcode: 0
[2024-05-17 22:35:31] 2024-05-18 05:35:13,207 | INFO     | exitmsg: OK
[2024-05-17 22:35:31] 2024-05-18 05:35:13,208 | INFO     | cpuconsumptiontime: 61258 s
[2024-05-17 22:35:31] 2024-05-18 05:35:13,208 | INFO     | nevents: 400
[2024-05-17 22:35:31] 2024-05-18 05:35:13,208 | INFO     | neventsw: 0
[2024-05-17 22:35:31] 2024-05-18 05:35:13,208 | INFO     | pid: 212052
[2024-05-17 22:35:31] 2024-05-18 05:35:13,208 | INFO     | pgrp: 212052
[2024-05-17 22:35:31] 2024-05-18 05:35:13,208 | INFO     | corecount: 12
[2024-05-17 22:35:31] 2024-05-18 05:35:13,208 | INFO     | event service: False
[2024-05-17 22:35:31] 2024-05-18 05:35:13,208 | INFO     | sizes: {0: 2392167, 4: 2392373, 11: 2392401, 6143: 2419308, 6144: 2419307, 6145: 2428317, 6148: 2428501, 6152: 2428671}
[2024-05-17 22:35:31] 2024-05-18 05:35:13,208 | INFO     | --------------------------------------------------
[2024-05-17 22:35:31] 2024-05-18 05:35:13,209 | INFO     | 
[2024-05-17 22:35:31] 2024-05-18 05:35:13,209 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-17 22:35:31] 2024-05-18 05:35:13,237 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-17 22:35:31] 2024-05-18 05:35:13,238 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-17 22:35:31] 2024-05-18 05:35:13,238 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-17 22:35:31] 2024-05-18 05:35:13,238 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-17 22:35:31] 2024-05-18 05:35:13,238 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-17 22:35:31] 2024-05-18 05:35:13,238 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-17 22:35:31] 2024-05-18 05:35:13,238 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-17 22:35:31] 2024-05-18 05:35:13,239 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-17 22:35:31] 2024-05-18 05:35:13,239 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-17 22:35:31] 2024-05-18 05:35:13,239 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-17 22:35:31] 2024-05-18 05:35:13,239 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-17 22:35:31] 2024-05-18 05:35:13,239 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-17 22:35:31] 2024-05-18 05:35:13,239 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-17 22:35:31] 2024-05-18 05:35:13,239 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-17 22:35:31] 2024-05-18 05:35:13,239 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-17 22:35:31] 2024-05-18 05:35:13,239 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-17 22:35:31] 2024-05-18 05:35:13,240 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-17 22:35:31] 2024-05-18 05:35:13,240 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-17 22:35:31] 2024-05-18 05:35:13,240 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-17 22:35:31] 2024-05-18 05:35:13,240 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-17 22:35:31] 2024-05-18 05:35:13,240 | INFO     | job 6208344543 has completed (purged errors)
[2024-05-17 22:35:31] 2024-05-18 05:35:13,240 | INFO     | overall cleanup function is called
[2024-05-17 22:35:31] 2024-05-18 05:35:14,250 | INFO     | --- collectZombieJob: --- 10, [212052]
[2024-05-17 22:35:31] 2024-05-18 05:35:14,250 | INFO     | zombie collector waiting for pid 212052
[2024-05-17 22:35:31] 2024-05-18 05:35:14,250 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-17 22:35:31] 2024-05-18 05:35:15,255 | INFO     | collected zombie processes
[2024-05-17 22:35:31] 2024-05-18 05:35:15,256 | INFO     | will now attempt to kill all subprocesses of pid=212052
[2024-05-17 22:35:31] 2024-05-18 05:35:15,448 | INFO     | process IDs to be killed: [212052] (in reverse order)
[2024-05-17 22:35:31] 2024-05-18 05:35:15,582 | WARNING  | found no corresponding commands to process id(s)
[2024-05-17 22:35:31] 2024-05-18 05:35:15,583 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-17 22:35:31] 2024-05-18 05:35:15,595 | INFO     | did not find any defunct processes belonging to 212052
[2024-05-17 22:35:31] 2024-05-18 05:35:15,606 | INFO     | did not find any defunct processes belonging to 212052
[2024-05-17 22:35:31] 2024-05-18 05:35:15,606 | INFO     | ready for new job
[2024-05-17 22:35:31] 2024-05-18 05:35:15,606 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-17 22:35:31] 2024-05-18 05:35:15,609 | INFO     | *************************************
[2024-05-17 22:35:31] 2024-05-18 05:35:15,609 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-17 22:35:31] 2024-05-18 05:35:15,609 | INFO     | *************************************
[2024-05-17 22:35:31] 2024-05-18 05:35:15,609 | INFO     | 
[2024-05-17 22:35:31] 2024-05-18 05:35:15,613 | INFO     | architecture information:
[2024-05-17 22:35:31] 2024-05-18 05:35:15,614 | INFO     | executing command: cat /etc/os-release
[2024-05-17 22:35:31] 2024-05-18 05:35:15,635 | INFO     | cat /etc/os-release:
[2024-05-17 22:35:31] NAME="CentOS Linux"
[2024-05-17 22:35:31] VERSION="7 (Core)"
[2024-05-17 22:35:31] ID="centos"
[2024-05-17 22:35:31] ID_LIKE="rhel fedora"
[2024-05-17 22:35:31] VERSION_ID="7"
[2024-05-17 22:35:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-17 22:35:31] ANSI_COLOR="0;31"
[2024-05-17 22:35:31] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-17 22:35:31] HOME_URL="https://www.centos.org/"
[2024-05-17 22:35:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-17 22:35:31] 
[2024-05-17 22:35:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-17 22:35:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-17 22:35:31] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-17 22:35:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-17 22:35:31] 
[2024-05-17 22:35:31] 2024-05-18 05:35:15,636 | INFO     | *************************************
[2024-05-17 22:35:31] 2024-05-18 05:35:16,139 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-17 22:35:31] 2024-05-18 05:35:16,160 | INFO     | sufficient remaining disk space (2071104323584 B)
[2024-05-17 22:35:31] 2024-05-18 05:35:16,160 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-17 22:35:31] 2024-05-18 05:35:16,160 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-17 22:35:31] 2024-05-18 05:35:16,161 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-17 22:35:31] 2024-05-18 05:35:16,161 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-17 22:35:31] 2024-05-18 05:35:16,161 | INFO     | found 0 job(s) in 20 queues
[2024-05-17 22:35:31] 2024-05-18 05:35:16,162 | INFO     | aborting loop
[2024-05-17 22:35:31] 2024-05-18 05:35:16,162 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-17 22:35:31] 2024-05-18 05:35:16,162 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-17 22:35:31] 2024-05-18 05:35:16,265 | INFO     | all data control threads have been joined
[2024-05-17 22:35:31] 2024-05-18 05:35:16,320 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-17 22:35:31] 2024-05-18 05:35:16,440 | INFO     | all payload control threads have been joined
[2024-05-17 22:35:31] 2024-05-18 05:35:17,166 | INFO     | [job] retrieve thread has finished
[2024-05-17 22:35:31] 2024-05-18 05:35:17,167 | INFO     | [job] job monitor thread has finished
[2024-05-17 22:35:31] 2024-05-18 05:35:17,224 | INFO     | [job] create_data_payload thread has finished
[2024-05-17 22:35:31] 2024-05-18 05:35:17,271 | INFO     | [data] control thread has finished
[2024-05-17 22:35:31] 2024-05-18 05:35:17,317 | INFO     | [payload] validate_pre thread has finished
[2024-05-17 22:35:31] 2024-05-18 05:35:17,332 | INFO     | [payload] failed_post thread has finished
[2024-05-17 22:35:31] 2024-05-18 05:35:17,446 | INFO     | [payload] control thread has finished
[2024-05-17 22:35:31] 2024-05-18 05:35:17,533 | INFO     | [data] copytool_in thread has finished
[2024-05-17 22:35:31] 2024-05-18 05:35:17,563 | INFO     | all job control threads have been joined
[2024-05-17 22:35:31] 2024-05-18 05:35:17,795 | INFO     | [payload] execute_payloads thread has finished
[2024-05-17 22:35:31] 2024-05-18 05:35:18,005 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-17 22:35:31] 2024-05-18 05:35:18,135 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-17 22:35:31] 2024-05-18 05:35:18,323 | INFO     | [data] copytool_out thread has finished
[2024-05-17 22:35:31] 2024-05-18 05:35:18,508 | INFO     | [job] validate thread has finished
[2024-05-17 22:35:31] 2024-05-18 05:35:18,567 | INFO     | [job] control thread has finished
[2024-05-17 22:35:31] 2024-05-18 05:35:18,671 | INFO     | [payload] validate_post thread has finished
[2024-05-17 22:35:31] 2024-05-18 05:35:19,011 | INFO     | [job] queue monitor thread has finished
[2024-05-17 22:35:31] 2024-05-18 05:35:19,330 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-17 22:35:31] 2024-05-18 05:35:23,336 | INFO     | [data] queue_monitor thread has finished
[2024-05-17 22:35:31] 2024-05-18 05:35:25,343 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140107065988928)>', '<ExcThread(monitor, started 140106648246016)>']
[2024-05-17 22:35:31] 2024-05-18 05:35:26,211 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-17 22:35:31] 2024-05-18 05:35:26,211 | INFO     | [monitor] control thread has ended
[2024-05-17 22:35:31] 2024-05-18 05:35:30,369 | INFO     | all workflow threads have been joined
[2024-05-17 22:35:31] 2024-05-18 05:35:30,369 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-17 22:35:31] 2024-05-18 05:35:30,370 | INFO     | traces error code: 0
[2024-05-17 22:35:31] 2024-05-18 05:35:30,370 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-17 22:35:31] 2024-05-18 05:35:30,484 [wrapper] ==== pilot stdout END ====
[2024-05-17 22:35:31] 2024-05-18 05:35:30,488 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-17 22:35:31] 2024-05-18 05:35:30,491 [wrapper] pilotpid: 203548
[2024-05-17 22:35:31] 2024-05-18 05:35:30,494 [wrapper] Pilot exit status: 0
[2024-05-17 22:35:31] 2024-05-18 05:35:30,506 [wrapper] pandaids: 6208344543
[2024-05-17 22:35:31] 2024-05-18 05:35:30,594 [wrapper] cleanup: SIGTERM to supervisor_pilot 153695 203549
[2024-05-17 22:35:31] 2024-05-18 05:35:30,598 [wrapper] Test setup, not cleaning
[2024-05-17 22:35:31] 2024-05-18 05:35:30,602 [wrapper] ==== wrapper stdout END ====
[2024-05-17 22:35:31] 2024-05-18 05:35:30,605 [wrapper] ==== wrapper stderr END ====
[2024-05-17 22:35:31] 2024-05-18 05:35:30,612 [wrapper] apfmon messages muted
[2024-05-17 22:35:31]  *** Error codes and diagnostics ***
[2024-05-17 22:35:31]     "exeErrorCode": 0,
[2024-05-17 22:35:31]     "exeErrorDiag": "",
[2024-05-17 22:35:31]     "pilotErrorCode": 0,
[2024-05-17 22:35:31]     "pilotErrorDiag": "",
[2024-05-17 22:35:31]  *** Listing of results directory ***
[2024-05-17 22:35:31] total 957468
[2024-05-17 22:35:31] -rw-r--r-- 1 boinc boinc    467845 May 17 13:40 pilot3.tar.gz
[2024-05-17 22:35:31] -rwx------ 1 boinc boinc     32251 May 17 13:44 runpilot2-wrapper.sh
[2024-05-17 22:35:31] -rw-r--r-- 1 boinc boinc      5633 May 17 13:44 queuedata.json
[2024-05-17 22:35:31] -rw-r--r-- 1 boinc boinc       100 May 17 20:52 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-17 22:35:31] -rwxr-xr-x 1 boinc boinc      7986 May 17 20:52 run_atlas
[2024-05-17 22:35:31] -rw-r--r-- 1 boinc boinc       105 May 17 20:52 job.xml
[2024-05-17 22:35:31] -rw-r--r-- 1 boinc boinc      6626 May 17 20:52 init_data.xml
[2024-05-17 22:35:31] -rw-r--r-- 2 boinc boinc 642815671 May 17 20:52 EVNT.38776170._000003.pool.root.1
[2024-05-17 22:35:31] drwxrwx--x 2 boinc boinc      4096 May 17 20:52 shared
[2024-05-17 22:35:31] -rw-r--r-- 2 boinc boinc    479996 May 17 20:52 input.tar.gz
[2024-05-17 22:35:31] -rw-r--r-- 2 boinc boinc     17537 May 17 20:52 start_atlas.sh
[2024-05-17 22:35:31] -rw-r--r-- 1 boinc boinc         0 May 17 20:52 boinc_lockfile
[2024-05-17 22:35:31] -rw-r--r-- 1 boinc boinc      2613 May 17 20:52 pandaJob.out
[2024-05-17 22:35:31] -rw------- 1 boinc boinc       424 May 17 20:52 setup.sh.local
[2024-05-17 22:35:31] -rw------- 1 boinc boinc   1019073 May 17 20:52 agis_schedconf.cvmfs.json
[2024-05-17 22:35:31] -rw------- 1 boinc boinc         0 May 17 20:52 agis_ddmendpoints.agis.ALL.json
[2024-05-17 22:35:31] -rw------- 1 boinc boinc   1324701 May 17 20:52 cric_ddmendpoints.json
[2024-05-17 22:35:31] drwx------ 4 boinc boinc      4096 May 17 20:52 pilot3
[2024-05-17 22:35:31] -rw------- 1 boinc boinc 332110786 May 17 22:34 HITS.38920987._004620.pool.root.1
[2024-05-17 22:35:31] -rw------- 1 boinc boinc        95 May 17 22:34 pilot_heartbeat.json
[2024-05-17 22:35:31] -rw-r--r-- 1 boinc boinc       530 May 17 22:34 boinc_task_state.xml
[2024-05-17 22:35:31] -rw------- 1 boinc boinc      1051 May 17 22:35 memory_monitor_summary.json
[2024-05-17 22:35:31] -rw------- 1 boinc boinc    378871 May 17 22:35 log.38920987._004620.job.log.tgz.1
[2024-05-17 22:35:31] -rw------- 1 boinc boinc      7752 May 17 22:35 heartbeat.json
[2024-05-17 22:35:31] -rw-r--r-- 1 boinc boinc      8192 May 17 22:35 boinc_mmap_file
[2024-05-17 22:35:31] -rw-r--r-- 1 boinc boinc        27 May 17 22:35 wrapper_checkpoint.txt
[2024-05-17 22:35:31] -rw------- 1 boinc boinc      4333 May 17 22:35 pilotlog.txt
[2024-05-17 22:35:31] -rw------- 1 boinc boinc    611095 May 17 22:35 log.38920987._004620.job.log.1
[2024-05-17 22:35:31] -rw------- 1 boinc boinc       357 May 17 22:35 output.list
[2024-05-17 22:35:31] -rw-r--r-- 1 boinc boinc       620 May 17 22:35 runtime_log
[2024-05-17 22:35:31] -rw------- 1 boinc boinc   1013760 May 17 22:35 result.tar.gz
[2024-05-17 22:35:31] -rw-r--r-- 1 boinc boinc     11286 May 17 22:35 runtime_log.err
[2024-05-17 22:35:31] -rw------- 1 boinc boinc       653 May 17 22:35 GJQLDmscJS5nsSi4apGgGQJmABFKDmABFKDm4ySLDmiXRKDmT5ejUm.diag
[2024-05-17 22:35:31] -rw-r--r-- 1 boinc boinc     21861 May 17 22:35 stderr.txt
[2024-05-17 22:35:31] HITS file was successfully produced:
[2024-05-17 22:35:31] -rw------- 1 boinc boinc 332110786 May 17 22:34 shared/HITS.pool.root.1
[2024-05-17 22:35:31]  *** Contents of shared directory: ***
[2024-05-17 22:35:31] total 953572
[2024-05-17 22:35:31] -rw-r--r-- 2 boinc boinc 642815671 May 17 20:52 ATLAS.root_0
[2024-05-17 22:35:31] -rw-r--r-- 2 boinc boinc    479996 May 17 20:52 input.tar.gz
[2024-05-17 22:35:31] -rw-r--r-- 2 boinc boinc     17537 May 17 20:52 start_atlas.sh
[2024-05-17 22:35:31] -rw------- 1 boinc boinc 332110786 May 17 22:34 HITS.pool.root.1
[2024-05-17 22:35:31] -rw------- 1 boinc boinc   1013760 May 17 22:35 result.tar.gz
22:35:33 (199316): run_atlas exited; CPU time 61053.784750
22:35:33 (199316): called boinc_finish(0)

</stderr_txt>
]]>

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