Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:39:49 (1107101): wrapper (7.7.26015): starting
19:39:49 (1107101): wrapper: running run_atlas (--nthreads 12)
[2024-05-18 19:39:49] Arguments: --nthreads 12
[2024-05-18 19:39:49] Threads: 12
[2024-05-18 19:39:49] Checking for CVMFS
[2024-05-18 19:39:49] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-18 19:39:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-18 19:39:49] Running cvmfs_config stat atlas.cern.ch
[2024-05-18 19:39:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-18 19:39:49] 2.11.2.0 114863 3681 85912 132894 2 56 3349517 4096000 0 65024 1 3575260 99.864 863896 1270 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch DIRECT 1
[2024-05-18 19:39:49] CVMFS is ok
[2024-05-18 19:39:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-18 19:39:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-18 19:39:49] Small home clusters do not require a local http proxy but it is suggested if
[2024-05-18 19:39:49] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2024-05-18 19:39:49] Further information can be found at the LHC@home message board.
[2024-05-18 19:39:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-18 19:39:49] Checking for apptainer binary...
[2024-05-18 19:39:49] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-18 19:39:49] Running /usr/bin/apptainer --version
[2024-05-18 19:39:49] /usr/bin/apptainer: symbol lookup error: /usr/bin/apptainer: undefined symbol: seccomp_notify_respond
[2024-05-18 19:39:49] apptainer seems to be installed but not working
[2024-05-18 19:39:49] Will use version from CVMFS
[2024-05-18 19:39:49] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-18 19:39:50] sarnet8.local
[2024-05-18 19:39:50] apptainer works
[2024-05-18 19:39:50] Set ATHENA_PROC_NUMBER=12
[2024-05-18 19:39:50] Set ATHENA_CORE_NUMBER=12
[2024-05-18 19:39:50] Starting ATLAS job with PandaID=6208341764
[2024-05-18 19:39:50] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-19 01:33:10]  *** The last 200 lines of the pilot log: ***
[2024-05-19 01:33:10] 2024-05-19 05:32:43,935 | INFO     | this job has now completed (state=finished)
[2024-05-19 01:33:10] 2024-05-19 05:32:43,935 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-19 01:33:10] 2024-05-19 05:32:43,935 | INFO     | job 6208341764 has finished - writing final server update
[2024-05-19 01:33:10] 2024-05-19 05:32:43,935 | INFO     | total number of processed events: 1950 (read)
[2024-05-19 01:33:10] 2024-05-19 05:32:43,936 | INFO     | executing command: lscpu
[2024-05-19 01:33:10] 2024-05-19 05:32:43,956 | INFO     | found 12 cores (6 cores per socket, 2 sockets)
[2024-05-19 01:33:10] 2024-05-19 05:32:43,956 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-19 01:33:10] 2024-05-19 05:32:43,987 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-19 01:33:10] 2024-05-19 05:32:44,145 | INFO     | monitor loop #1515: job 0:6208341764 is in state 'finished'
[2024-05-19 01:33:10] 2024-05-19 05:32:44,146 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-19 01:33:10] 2024-05-19 05:32:46,648 | INFO     | monitor loop #1516: job 0:6208341764 is in state 'finished'
[2024-05-19 01:33:10] 2024-05-19 05:32:46,648 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-19 01:33:10] 2024-05-19 05:32:49,151 | INFO     | monitor loop #1517: job 0:6208341764 is in state 'finished'
[2024-05-19 01:33:10] 2024-05-19 05:32:49,152 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-19 01:33:10] 2024-05-19 05:32:50,231 | INFO     | CPU arch script returned: x86-64-v3
[2024-05-19 01:33:10] 2024-05-19 05:32:50,232 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6208341764/memory_monitor_summary.json (trf name=prmon)
[2024-05-19 01:33:10] 2024-05-19 05:32:50,232 | INFO     | extracted standard info from prmon json
[2024-05-19 01:33:10] 2024-05-19 05:32:50,232 | INFO     | extracted standard memory fields from prmon json
[2024-05-19 01:33:10] 2024-05-19 05:32:50,232 | WARNING  | GPU info not found in prmon json
[2024-05-19 01:33:10] 2024-05-19 05:32:50,236 | INFO     | fitting pss+swap vs Time
[2024-05-19 01:33:10] 2024-05-19 05:32:50,236 | INFO     | model: linear, x: [1716075621.0, 1716075682.0, 1716075743.0, 1716075804.0, 1716075865.0, 1716075926.0, 1716075987.0, 1716076048.0, 1716076109.0, 1716076170.0, 1716
[2024-05-19 01:33:10] 2024-05-19 05:32:50,237 | INFO     | sum of square deviations: 12955913882.824198
[2024-05-19 01:33:10] 2024-05-19 05:32:50,238 | INFO     | sum of deviations: 885848967464.5262
[2024-05-19 01:33:10] 2024-05-19 05:32:50,238 | INFO     | mean x: 1716086174.18732
[2024-05-19 01:33:10] 2024-05-19 05:32:50,238 | INFO     | mean y: 4331899.438040346
[2024-05-19 01:33:10] 2024-05-19 05:32:50,238 | INFO     | -- intersect: -117331517908.83554
[2024-05-19 01:33:10] 2024-05-19 05:32:50,239 | INFO     | intersect: -117331517908.83554
[2024-05-19 01:33:10] 2024-05-19 05:32:50,239 | INFO     | chi2: 20.07060254744593
[2024-05-19 01:33:10] 2024-05-19 05:32:50,239 | INFO     | model: linear, x: [1716075621.0, 1716075682.0, 1716075743.0, 1716075804.0, 1716075865.0, 1716075926.0, 1716075987.0, 1716076048.0, 1716076109.0, 1716076170.0, 1716
[2024-05-19 01:33:10] 2024-05-19 05:32:50,239 | INFO     | sum of square deviations: 12403914055.146215
[2024-05-19 01:33:10] 2024-05-19 05:32:50,241 | INFO     | sum of deviations: 1074158621264.5836
[2024-05-19 01:33:10] 2024-05-19 05:32:50,241 | INFO     | mean x: 1716086021.6900585
[2024-05-19 01:33:10] 2024-05-19 05:32:50,241 | INFO     | mean y: 4383928.760233918
[2024-05-19 01:33:10] 2024-05-19 05:32:50,241 | INFO     | -- intersect: -148605852068.90353
[2024-05-19 01:33:10] 2024-05-19 05:32:50,241 | INFO     | intersect: -148605852068.90353
[2024-05-19 01:33:10] 2024-05-19 05:32:50,241 | INFO     | chi2: 16.469763916542743
[2024-05-19 01:33:10] 2024-05-19 05:32:50,241 | INFO     | current chi2=16.469763916542743 (change=17.94085963483647 %)
[2024-05-19 01:33:10] 2024-05-19 05:32:50,241 | INFO     | right removable region: 341
[2024-05-19 01:33:10] 2024-05-19 05:32:50,242 | INFO     | model: linear, x: [1716075926.0, 1716075987.0, 1716076048.0, 1716076109.0, 1716076170.0, 1716076231.0, 1716076292.0, 1716076353.0, 1716076414.0, 1716076475.0, 1716
[2024-05-19 01:33:10] 2024-05-19 05:32:50,242 | INFO     | sum of square deviations: 12403874405.146227
[2024-05-19 01:33:10] 2024-05-19 05:32:50,243 | INFO     | sum of deviations: 694501658317.3795
[2024-05-19 01:33:10] 2024-05-19 05:32:50,243 | INFO     | mean x: 1716086326.6900585
[2024-05-19 01:33:10] 2024-05-19 05:32:50,243 | INFO     | mean y: 4384725.494152047
[2024-05-19 01:33:10] 2024-05-19 05:32:50,244 | INFO     | -- intersect: -96080496560.27179
[2024-05-19 01:33:10] 2024-05-19 05:32:50,244 | INFO     | intersect: -96080496560.27179
[2024-05-19 01:33:10] 2024-05-19 05:32:50,244 | INFO     | chi2: 16.174498266245287
[2024-05-19 01:33:10] 2024-05-19 05:32:50,244 | INFO     | current chi2=16.174498266245287 (change=19.411994592541213 %)
[2024-05-19 01:33:10] 2024-05-19 05:32:50,244 | INFO     | left removable region: 10
[2024-05-19 01:33:10] 2024-05-19 05:32:50,244 | INFO     | model: linear, x: [1716076231.0, 1716076292.0, 1716076353.0, 1716076414.0, 1716076475.0, 1716076536.0, 1716076597.0, 1716076658.0, 1716076719.0, 1716076780.0, 1716
[2024-05-19 01:33:10] 2024-05-19 05:32:50,244 | INFO     | sum of square deviations: 11245101294.23564
[2024-05-19 01:33:10] 2024-05-19 05:32:50,246 | INFO     | sum of deviations: 751070696989.2355
[2024-05-19 01:33:10] 2024-05-19 05:32:50,246 | INFO     | mean x: 1716086296.1963747
[2024-05-19 01:33:10] 2024-05-19 05:32:50,246 | INFO     | mean y: 4500398.196374622
[2024-05-19 01:33:10] 2024-05-19 05:32:50,246 | INFO     | -- intersect: -114614487626.26826
[2024-05-19 01:33:10] 2024-05-19 05:32:50,246 | INFO     | intersect: -114614487626.26826
[2024-05-19 01:33:10] 2024-05-19 05:32:50,246 | INFO     | chi2: 8.787190039477943
[2024-05-19 01:33:10] 2024-05-19 05:32:50,246 | INFO     | -- intersect: -114614487626.26826
[2024-05-19 01:33:10] 2024-05-19 05:32:50,247 | INFO     | current memory leak: 66.79 B/s (using 331 data points, chi2=8.79)
[2024-05-19 01:33:10] 2024-05-19 05:32:50,247 | INFO     | ..............................
[2024-05-19 01:33:10] 2024-05-19 05:32:50,247 | INFO     | . Timing measurements:
[2024-05-19 01:33:10] 2024-05-19 05:32:50,247 | INFO     | . get job = 0 s
[2024-05-19 01:33:10] 2024-05-19 05:32:50,247 | INFO     | . initial setup = 1 s
[2024-05-19 01:33:10] 2024-05-19 05:32:50,247 | INFO     | . payload setup = 7 s
[2024-05-19 01:33:10] 2024-05-19 05:32:50,247 | INFO     | . stage-in = 0 s
[2024-05-19 01:33:10] 2024-05-19 05:32:50,247 | INFO     | . payload execution = 21140 s
[2024-05-19 01:33:10] 2024-05-19 05:32:50,247 | INFO     | . stage-out = 1 s
[2024-05-19 01:33:10] 2024-05-19 05:32:50,247 | INFO     | . log creation = 0 s
[2024-05-19 01:33:10] 2024-05-19 05:32:50,247 | INFO     | ..............................
[2024-05-19 01:33:10] 2024-05-19 05:32:50,295 | INFO     | 
[2024-05-19 01:33:10] 2024-05-19 05:32:50,295 | INFO     | job summary report
[2024-05-19 01:33:10] 2024-05-19 05:32:50,295 | INFO     | --------------------------------------------------
[2024-05-19 01:33:10] 2024-05-19 05:32:50,295 | INFO     | PanDA job id: 6208341764
[2024-05-19 01:33:10] 2024-05-19 05:32:50,296 | INFO     | task id: 38734053
[2024-05-19 01:33:10] 2024-05-19 05:32:50,296 | INFO     | errors: (none)
[2024-05-19 01:33:10] 2024-05-19 05:32:50,296 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-19 01:33:10] 2024-05-19 05:32:50,296 | INFO     | pilot state: finished 
[2024-05-19 01:33:10] 2024-05-19 05:32:50,296 | INFO     | transexitcode: 0
[2024-05-19 01:33:10] 2024-05-19 05:32:50,296 | INFO     | exeerrorcode: 0
[2024-05-19 01:33:10] 2024-05-19 05:32:50,296 | INFO     | exeerrordiag: 
[2024-05-19 01:33:10] 2024-05-19 05:32:50,296 | INFO     | exitcode: 0
[2024-05-19 01:33:10] 2024-05-19 05:32:50,296 | INFO     | exitmsg: OK
[2024-05-19 01:33:10] 2024-05-19 05:32:50,296 | INFO     | cpuconsumptiontime: 226975 s
[2024-05-19 01:33:10] 2024-05-19 05:32:50,296 | INFO     | nevents: 1950
[2024-05-19 01:33:10] 2024-05-19 05:32:50,296 | INFO     | neventsw: 0
[2024-05-19 01:33:10] 2024-05-19 05:32:50,296 | INFO     | pid: 1118452
[2024-05-19 01:33:10] 2024-05-19 05:32:50,296 | INFO     | pgrp: 1118452
[2024-05-19 01:33:10] 2024-05-19 05:32:50,296 | INFO     | corecount: 12
[2024-05-19 01:33:10] 2024-05-19 05:32:50,296 | INFO     | event service: False
[2024-05-19 01:33:10] 2024-05-19 05:32:50,296 | INFO     | sizes: {0: 2392640, 3: 2392846, 11: 2392874, 21151: 2445356, 21153: 2454372, 21160: 2454538}
[2024-05-19 01:33:10] 2024-05-19 05:32:50,296 | INFO     | --------------------------------------------------
[2024-05-19 01:33:10] 2024-05-19 05:32:50,296 | INFO     | 
[2024-05-19 01:33:10] 2024-05-19 05:32:50,296 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2024-05-19 01:33:10] 2024-05-19 05:32:50,315 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-19 01:33:10] 2024-05-19 05:32:50,315 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-19 01:33:10] 2024-05-19 05:32:50,315 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-19 01:33:10] 2024-05-19 05:32:50,316 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-19 01:33:10] 2024-05-19 05:32:50,316 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-19 01:33:10] 2024-05-19 05:32:50,316 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-19 01:33:10] 2024-05-19 05:32:50,316 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-19 01:33:10] 2024-05-19 05:32:50,316 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-19 01:33:10] 2024-05-19 05:32:50,316 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-19 01:33:10] 2024-05-19 05:32:50,316 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-19 01:33:10] 2024-05-19 05:32:50,316 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-19 01:33:10] 2024-05-19 05:32:50,316 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-19 01:33:10] 2024-05-19 05:32:50,316 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-19 01:33:10] 2024-05-19 05:32:50,316 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-19 01:33:10] 2024-05-19 05:32:50,316 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-19 01:33:10] 2024-05-19 05:32:50,316 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-19 01:33:10] 2024-05-19 05:32:50,316 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-19 01:33:10] 2024-05-19 05:32:50,316 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-19 01:33:10] 2024-05-19 05:32:50,316 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-19 01:33:10] 2024-05-19 05:32:50,316 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-19 01:33:10] 2024-05-19 05:32:50,317 | INFO     | job 6208341764 has completed (purged errors)
[2024-05-19 01:33:10] 2024-05-19 05:32:50,317 | INFO     | overall cleanup function is called
[2024-05-19 01:33:10] 2024-05-19 05:32:51,332 | INFO     | --- collectZombieJob: --- 10, [1118452]
[2024-05-19 01:33:10] 2024-05-19 05:32:51,332 | INFO     | zombie collector waiting for pid 1118452
[2024-05-19 01:33:10] 2024-05-19 05:32:51,332 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-19 01:33:10] 2024-05-19 05:32:52,337 | INFO     | collected zombie processes
[2024-05-19 01:33:10] 2024-05-19 05:32:52,337 | INFO     | will now attempt to kill all subprocesses of pid=1118452
[2024-05-19 01:33:10] 2024-05-19 05:32:52,396 | INFO     | process IDs to be killed: [1118452] (in reverse order)
[2024-05-19 01:33:10] 2024-05-19 05:32:52,429 | WARNING  | found no corresponding commands to process id(s)
[2024-05-19 01:33:10] 2024-05-19 05:32:52,429 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-19 01:33:10] 2024-05-19 05:32:52,431 | INFO     | did not find any defunct processes belonging to 1118452
[2024-05-19 01:33:10] 2024-05-19 05:32:52,433 | INFO     | did not find any defunct processes belonging to 1118452
[2024-05-19 01:33:10] 2024-05-19 05:32:52,433 | INFO     | ready for new job
[2024-05-19 01:33:10] 2024-05-19 05:32:52,433 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-19 01:33:10] 2024-05-19 05:32:52,434 | INFO     | *************************************
[2024-05-19 01:33:10] 2024-05-19 05:32:52,434 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-19 01:33:10] 2024-05-19 05:32:52,434 | INFO     | *************************************
[2024-05-19 01:33:10] 2024-05-19 05:32:52,434 | INFO     | 
[2024-05-19 01:33:10] 2024-05-19 05:32:52,435 | INFO     | pilot is running in a VM
[2024-05-19 01:33:10] 2024-05-19 05:32:52,435 | INFO     | architecture information:
[2024-05-19 01:33:10] 2024-05-19 05:32:52,435 | INFO     | executing command: cat /etc/os-release
[2024-05-19 01:33:10] 2024-05-19 05:32:52,451 | INFO     | cat /etc/os-release:
[2024-05-19 01:33:10] NAME="CentOS Linux"
[2024-05-19 01:33:10] VERSION="7 (Core)"
[2024-05-19 01:33:10] ID="centos"
[2024-05-19 01:33:10] ID_LIKE="rhel fedora"
[2024-05-19 01:33:10] VERSION_ID="7"
[2024-05-19 01:33:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-19 01:33:10] ANSI_COLOR="0;31"
[2024-05-19 01:33:10] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-19 01:33:10] HOME_URL="https://www.centos.org/"
[2024-05-19 01:33:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-19 01:33:10] 
[2024-05-19 01:33:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-19 01:33:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-19 01:33:10] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-19 01:33:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-19 01:33:10] 
[2024-05-19 01:33:10] 2024-05-19 05:32:52,451 | INFO     | *************************************
[2024-05-19 01:33:10] 2024-05-19 05:32:52,954 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2024-05-19 01:33:10] 2024-05-19 05:32:52,976 | INFO     | sufficient remaining disk space (25417482240 B)
[2024-05-19 01:33:10] 2024-05-19 05:32:52,976 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-19 01:33:10] 2024-05-19 05:32:52,976 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-19 01:33:10] 2024-05-19 05:32:52,977 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-19 01:33:10] 2024-05-19 05:32:52,977 | INFO     | aborting loop
[2024-05-19 01:33:10] 2024-05-19 05:32:53,194 | INFO     | all job control threads have been joined
[2024-05-19 01:33:10] 2024-05-19 05:32:53,417 | INFO     | all data control threads have been joined
[2024-05-19 01:33:10] 2024-05-19 05:32:53,934 | INFO     | found 0 job(s) in 20 queues
[2024-05-19 01:33:10] 2024-05-19 05:32:53,934 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-19 01:33:10] 2024-05-19 05:32:53,934 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-19 01:33:10] 2024-05-19 05:32:53,982 | INFO     | [job] retrieve thread has finished
[2024-05-19 01:33:10] 2024-05-19 05:32:53,982 | INFO     | [job] job monitor thread has finished
[2024-05-19 01:33:10] 2024-05-19 05:32:53,991 | INFO     | [payload] failed_post thread has finished
[2024-05-19 01:33:10] 2024-05-19 05:32:54,198 | INFO     | [payload] validate_post thread has finished
[2024-05-19 01:33:10] 2024-05-19 05:32:54,200 | INFO     | [job] control thread has finished
[2024-05-19 01:33:10] 2024-05-19 05:32:54,290 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-19 01:33:10] 2024-05-19 05:32:54,414 | INFO     | all payload control threads have been joined
[2024-05-19 01:33:10] 2024-05-19 05:32:54,423 | INFO     | [data] control thread has finished
[2024-05-19 01:33:10] 2024-05-19 05:32:54,444 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-19 01:33:10] 2024-05-19 05:32:54,548 | INFO     | [data] copytool_in thread has finished
[2024-05-19 01:33:10] 2024-05-19 05:32:54,774 | INFO     | [job] create_data_payload thread has finished
[2024-05-19 01:33:10] 2024-05-19 05:32:54,955 | INFO     | [payload] execute_payloads thread has finished
[2024-05-19 01:33:10] 2024-05-19 05:32:55,029 | INFO     | [payload] validate_pre thread has finished
[2024-05-19 01:33:10] 2024-05-19 05:32:55,101 | INFO     | [job] validate thread has finished
[2024-05-19 01:33:10] 2024-05-19 05:32:55,306 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-19 01:33:10] 2024-05-19 05:32:55,420 | INFO     | [payload] control thread has finished
[2024-05-19 01:33:10] 2024-05-19 05:32:56,296 | INFO     | [data] copytool_out thread has finished
[2024-05-19 01:33:10] 2024-05-19 05:32:56,311 | INFO     | [job] queue monitor thread has finished
[2024-05-19 01:33:10] 2024-05-19 05:32:58,449 | INFO     | [data] queue_monitor thread has finished
[2024-05-19 01:33:10] 2024-05-19 05:33:03,294 | INFO     | job.realtimelogging is not enabled
[2024-05-19 01:33:10] 2024-05-19 05:33:04,299 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-19 01:33:10] 2024-05-19 05:33:04,824 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139956620396352)>', '<ExcThread(monitor, started 139956173387520)>']
[2024-05-19 01:33:10] 2024-05-19 05:33:04,990 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-19 01:33:10] 2024-05-19 05:33:04,991 | INFO     | [monitor] control thread has ended
[2024-05-19 01:33:10] 2024-05-19 05:33:09,850 | INFO     | all workflow threads have been joined
[2024-05-19 01:33:10] 2024-05-19 05:33:09,850 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-19 01:33:10] 2024-05-19 05:33:09,850 | INFO     | traces error code: 0
[2024-05-19 01:33:10] 2024-05-19 05:33:09,850 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-19 01:33:10] 2024-05-19 05:33:09,895 [wrapper] ==== pilot stdout END ====
[2024-05-19 01:33:10] 2024-05-19 05:33:09,897 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-19 01:33:10] 2024-05-19 05:33:09,899 [wrapper] pilotpid: 1111300
[2024-05-19 01:33:10] 2024-05-19 05:33:09,901 [wrapper] Pilot exit status: 0
[2024-05-19 01:33:10] 2024-05-19 05:33:09,909 [wrapper] pandaids: 6208341764
[2024-05-19 01:33:10] 2024-05-19 05:33:09,929 [wrapper] cleanup: SIGTERM to supervisor_pilot 1165559 1111301
[2024-05-19 01:33:10] 2024-05-19 05:33:09,931 [wrapper] Test setup, not cleaning
[2024-05-19 01:33:10] 2024-05-19 05:33:09,933 [wrapper] ==== wrapper stdout END ====
[2024-05-19 01:33:10] 2024-05-19 05:33:09,935 [wrapper] ==== wrapper stderr END ====
[2024-05-19 01:33:10] 2024-05-19 05:33:09,939 [wrapper] apfmon messages muted
[2024-05-19 01:33:10]  *** Error codes and diagnostics ***
[2024-05-19 01:33:10]     "exeErrorCode": 0,
[2024-05-19 01:33:10]     "exeErrorDiag": "",
[2024-05-19 01:33:10]     "pilotErrorCode": 0,
[2024-05-19 01:33:10]     "pilotErrorDiag": "",
[2024-05-19 01:33:10]  *** Listing of results directory ***
[2024-05-19 01:33:10] total 1491680
[2024-05-19 01:33:10] -rw-r--r--. 1 boinc boinc     467845 May 17 15:53 pilot3.tar.gz
[2024-05-19 01:33:10] -rwx------. 1 boinc boinc      32251 May 17 16:10 runpilot2-wrapper.sh
[2024-05-19 01:33:10] -rw-r--r--. 1 boinc boinc       5633 May 17 16:10 queuedata.json
[2024-05-19 01:33:10] -rw-r--r--. 1 boinc boinc        100 May 18 19:39 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-19 01:33:10] -rwxr-xr-x. 1 boinc boinc       7986 May 18 19:39 run_atlas
[2024-05-19 01:33:10] -rw-r--r--. 1 boinc boinc        105 May 18 19:39 job.xml
[2024-05-19 01:33:10] -rw-r--r--. 2 boinc boinc      17537 May 18 19:39 start_atlas.sh
[2024-05-19 01:33:10] drwxrwx--x. 2 boinc boinc         68 May 18 19:39 shared
[2024-05-19 01:33:10] -rw-r--r--. 2 boinc boinc     480170 May 18 19:39 input.tar.gz
[2024-05-19 01:33:10] -rw-r--r--. 1 boinc boinc       6167 May 18 19:39 init_data.xml
[2024-05-19 01:33:10] -rw-r--r--. 2 boinc boinc  329375022 May 18 19:39 EVNT.38734051._000521.pool.root.1
[2024-05-19 01:33:10] -rw-r--r--. 1 boinc boinc          0 May 18 19:39 boinc_lockfile
[2024-05-19 01:33:10] -rw-r--r--. 1 boinc boinc       2853 May 18 19:39 pandaJob.out
[2024-05-19 01:33:10] -rw-------. 1 boinc boinc        424 May 18 19:39 setup.sh.local
[2024-05-19 01:33:10] -rw-------. 1 boinc boinc    1013712 May 18 19:39 agis_schedconf.cvmfs.json
[2024-05-19 01:33:10] -rw-------. 1 boinc boinc    1324701 May 18 19:39 cric_ddmendpoints.json
[2024-05-19 01:33:10] drwx------. 4 boinc boinc       4096 May 18 19:39 pilot3
[2024-05-19 01:33:10] -rw-r--r--. 1 boinc boinc        533 May 19 01:24 boinc_task_state.xml
[2024-05-19 01:33:10] -rw-------. 1 boinc boinc 1185266718 May 19 01:32 HITS.38734053._007995.pool.root.1
[2024-05-19 01:33:10] -rw-------. 1 boinc boinc         95 May 19 01:32 pilot_heartbeat.json
[2024-05-19 01:33:10] -rw-------. 1 boinc boinc       1052 May 19 01:32 memory_monitor_summary.json
[2024-05-19 01:33:10] -rw-------. 1 boinc boinc          0 May 19 01:32 agis_ddmendpoints.agis.ALL.json
[2024-05-19 01:33:10] -rw-------. 1 boinc boinc    2361057 May 19 01:32 log.38734053._007995.job.log.tgz.1
[2024-05-19 01:33:10] -rw-------. 1 boinc boinc      27169 May 19 01:32 heartbeat.json
[2024-05-19 01:33:10] -rw-r--r--. 1 boinc boinc       8192 May 19 01:33 boinc_mmap_file
[2024-05-19 01:33:10] -rw-r--r--. 1 boinc boinc         29 May 19 01:33 wrapper_checkpoint.txt
[2024-05-19 01:33:10] -rw-------. 1 boinc boinc       4345 May 19 01:33 pilotlog.txt
[2024-05-19 01:33:10] -rw-------. 1 boinc boinc    2277881 May 19 01:33 log.38734053._007995.job.log.1
[2024-05-19 01:33:10] -rw-------. 1 boinc boinc        353 May 19 01:33 output.list
[2024-05-19 01:33:10] -rw-r--r--. 1 boinc boinc        620 May 19 01:33 runtime_log
[2024-05-19 01:33:10] -rw-------. 1 boinc boinc    4679680 May 19 01:33 result.tar.gz
[2024-05-19 01:33:10] -rw-r--r--. 1 boinc boinc      10989 May 19 01:33 runtime_log.err
[2024-05-19 01:33:10] -rw-------. 1 boinc boinc        653 May 19 01:33 BBfNDm05IS5n9Rq4apoT9bVoABFKDmABFKDmlqFKDm9SLKDmQvolSo.diag
[2024-05-19 01:33:10] -rw-r--r--. 1 boinc boinc      22316 May 19 01:33 stderr.txt
[2024-05-19 01:33:10] HITS file was successfully produced:
[2024-05-19 01:33:10] -rw-------. 1 boinc boinc 1185266718 May 19 01:32 shared/HITS.pool.root.1
[2024-05-19 01:33:10]  *** Contents of shared directory: ***
[2024-05-19 01:33:10] total 1484208
[2024-05-19 01:33:10] -rw-r--r--. 2 boinc boinc      17537 May 18 19:39 start_atlas.sh
[2024-05-19 01:33:10] -rw-r--r--. 2 boinc boinc     480170 May 18 19:39 input.tar.gz
[2024-05-19 01:33:10] -rw-r--r--. 2 boinc boinc  329375022 May 18 19:39 ATLAS.root_0
[2024-05-19 01:33:10] -rw-------. 1 boinc boinc 1185266718 May 19 01:32 HITS.pool.root.1
[2024-05-19 01:33:10] -rw-------. 1 boinc boinc    4679680 May 19 01:33 result.tar.gz
01:33:11 (1107101): run_atlas exited; CPU time 226734.789900
01:33:11 (1107101): called boinc_finish(0)

</stderr_txt>
]]>

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