Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2024-05-17 20:26:16 (21832): Detected: vboxwrapper 26206
2024-05-17 20:26:16 (21832): Detected: BOINC client v7.24.1
2024-05-17 20:26:17 (21832): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2024-05-17 20:26:17 (21832): Successfully copied 'init_data.xml' to the shared directory.
2024-05-17 20:26:18 (21832): Create VM. (boinc_1b2ff7cc35bd9ed6, slot#5)
2024-05-17 20:26:18 (21832): Setting Memory Size for VM. (4500MB)
2024-05-17 20:26:19 (21832): Setting CPU Count for VM. (5)
2024-05-17 20:26:19 (21832): Setting Chipset Options for VM.
2024-05-17 20:26:19 (21832): Setting Graphics Controller Options for VM.
2024-05-17 20:26:19 (21832): Setting Boot Options for VM.
2024-05-17 20:26:20 (21832): Setting Network Configuration for NAT.
2024-05-17 20:26:20 (21832): Enabling VM Network Access.
2024-05-17 20:26:20 (21832): Disabling USB Support for VM.
2024-05-17 20:26:21 (21832): Disabling COM Port Support for VM.
2024-05-17 20:26:21 (21832): Disabling LPT Port Support for VM.
2024-05-17 20:26:21 (21832): Disabling Audio Support for VM.
2024-05-17 20:26:21 (21832): Disabling Clipboard Support for VM.
2024-05-17 20:26:22 (21832): Disabling Drag and Drop Support for VM.
2024-05-17 20:26:22 (21832): Adding storage controller(s) to VM.
2024-05-17 20:26:22 (21832): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-05-17 20:26:25 (21832): Adding VirtualBox Guest Additions to VM.
2024-05-17 20:26:25 (21832): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-05-17 20:26:26 (21832): forwarding host port 61297 to guest port 80
2024-05-17 20:26:26 (21832): Enabling remote desktop for VM.
2024-05-17 20:26:26 (21832): Required extension pack not installed, remote desktop not enabled.
2024-05-17 20:26:26 (21832): Enabling shared directory for VM.
2024-05-17 20:26:27 (21832): Starting VM using VBoxManage interface. (boinc_1b2ff7cc35bd9ed6, slot#5)
2024-05-17 20:26:32 (21832): Successfully started VM. (PID = '26812')
2024-05-17 20:26:32 (21832): Reporting VM Process ID to BOINC.
2024-05-17 20:26:32 (21832): Guest Log: BIOS: VirtualBox 7.0.6
2024-05-17 20:26:32 (21832): Guest Log: CPUID EDX: 0x178bfbff
2024-05-17 20:26:32 (21832): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-05-17 20:26:32 (21832): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-05-17 20:26:32 (21832): VM state change detected. (old = 'poweredoff', new = 'running')
2024-05-17 20:26:32 (21832): Detected: Web Application Enabled (http://localhost:61297)
2024-05-17 20:26:33 (21832): VM state change detected. (old = 'running', new = 'paused')
2024-05-17 20:26:46 (21832): Preference change detected
2024-05-17 20:26:46 (21832): Setting CPU throttle for VM. (100%)
2024-05-17 20:26:46 (21832): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-05-17 20:26:46 (21832): VM state change detected. (old = 'paused', new = 'running')
2024-05-17 20:26:47 (21832): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-05-17 20:26:47 (21832): Guest Log: BIOS: Booting from Hard Disk...
2024-05-17 20:26:49 (21832): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-05-17 20:26:49 (21832): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-05-17 20:26:49 (21832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-05-17 20:26:49 (21832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-05-17 20:26:49 (21832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-05-17 20:26:49 (21832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-05-17 20:26:49 (21832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-05-17 20:26:49 (21832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-05-17 20:26:49 (21832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-05-17 20:26:49 (21832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-05-17 20:26:49 (21832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-05-17 20:26:49 (21832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-05-17 20:26:49 (21832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-05-17 20:26:49 (21832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-05-17 20:26:49 (21832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-05-17 20:26:49 (21832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-05-17 20:26:49 (21832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-05-17 20:26:49 (21832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-05-17 20:26:49 (21832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-05-17 20:26:49 (21832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-05-17 20:26:49 (21832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-05-17 20:26:49 (21832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-05-17 20:26:49 (21832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-05-17 20:26:49 (21832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-05-17 20:26:49 (21832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-05-17 20:26:49 (21832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-05-17 20:26:49 (21832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-05-17 20:26:49 (21832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-05-17 20:26:49 (21832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-05-17 20:26:49 (21832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-05-17 20:26:49 (21832): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-05-17 20:26:49 (21832): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-05-17 20:26:55 (21832): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-05-17 20:26:55 (21832): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-05-17 20:26:56 (21832): VM state change detected. (old = 'running', new = 'paused')
2024-05-17 20:27:16 (21832): VM state change detected. (old = 'paused', new = 'running')
2024-05-17 20:27:18 (21832): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-05-17 20:27:18 (21832): Guest Log: 00:00:00.000076 main     Log opened 2024-05-17T20:26:43.814794000Z
2024-05-17 20:27:18 (21832): Guest Log: 00:00:00.000139 main     OS Product: Linux
2024-05-17 20:27:18 (21832): Guest Log: 00:00:00.000163 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-05-17 20:27:18 (21832): Guest Log: 00:00:00.000181 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-05-17 20:27:18 (21832): Guest Log: 00:00:00.000199 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-05-17 20:27:18 (21832): Guest Log: 00:00:00.000200 main     Process ID: 1318
2024-05-17 20:27:18 (21832): Guest Log: 00:00:00.000200 main     Package type: LINUX_64BITS_GENERIC
2024-05-17 20:27:18 (21832): Guest Log: 00:00:00.001520 main     5.2.32 r132073 started. Verbose level = 0
2024-05-17 20:27:18 (21832): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-05-17 20:27:18 (21832): Guest Log: [INFO] Mounting shared directory
2024-05-17 20:27:19 (21832): Guest Log: [INFO] Checking for init_data.xml
2024-05-17 20:27:28 (21832): Guest Log: 00:00:10.026245 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 445 090 268 000ns (GuestNow=1 715 992 048 908 102 000 ns GuestLast=1 715 977 603 817 834 000 ns fSetTimeLastLoop=true )
2024-05-17 20:27:30 (21832): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-05-17 20:27:30 (21832): Guest Log: [INFO] Detected branch: prod
2024-05-17 20:27:30 (21832): Guest Log: This is the prod version of the ATLAS job wrapper
2024-05-17 20:27:30 (21832): Guest Log: Copying input files
2024-05-17 20:27:32 (21832): Guest Log: Copied input files into RunAtlas.
2024-05-17 20:27:32 (21832): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-05-17 20:27:32 (21832): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-05-17 20:27:32 (21832): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-05-17 20:27:32 (21832): Guest Log: Further information can be found at the LHC@home message board.
2024-05-17 20:27:40 (21832): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-05-17 20:27:40 (21832): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-05-17 20:27:40 (21832): Guest Log: 2.6.3.0 1598 0 30140 132860 4 1 3116989 4096000 0 65024 0 0 n/a 0 0 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2024-05-17 20:27:40 (21832): Guest Log: copied the webapp to /var/www
2024-05-17 20:27:40 (21832): Guest Log: ATHENA_PROC_NUMBER=5
2024-05-17 20:27:40 (21832): Guest Log: ATHENA_CORE_NUMBER=5
2024-05-17 20:27:41 (21832): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-05-17 20:27:41 (21832): Guest Log:  *** Starting ATLAS job. (PandaID=6208327646 taskID=38744253) ***
2024-05-17 21:38:57 (21832): VM state change detected. (old = 'running', new = 'paused')
2024-05-17 21:39:17 (21832): VM state change detected. (old = 'paused', new = 'running')
2024-05-17 22:07:33 (21832): Status Report: Elapsed Time: '6000.000000'
2024-05-17 22:07:33 (21832): Status Report: CPU Time: '11935.203125'
2024-05-17 22:07:47 (21832): Guest Log:  *** Job finished ***
2024-05-17 22:07:47 (21832): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-05-17 22:07:47 (21832): Guest Log: 2024-05-18 02:07:09,942 | INFO     | [data] queue_monitor thread has finished
2024-05-17 22:07:47 (21832): Guest Log: 2024-05-18 02:07:16,445 | INFO     | job.realtimelogging is not enabled
2024-05-17 22:07:47 (21832): Guest Log: 2024-05-18 02:07:17,448 | INFO     | [payload] run_realtimelog thread has finished
2024-05-17 22:07:47 (21832): Guest Log: 2024-05-18 02:07:18,968 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140503329339200)>', '<ExcThread(monitor, started 140502406002432)>']
2024-05-17 22:07:47 (21832): Guest Log: 2024-05-18 02:07:19,969 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-05-17 22:07:47 (21832): Guest Log: 2024-05-18 02:07:19,970 | INFO     | [monitor] control thread has ended
2024-05-17 22:07:47 (21832): Guest Log: 2024-05-18 02:07:23,968 | INFO     | all workflow threads have been joined
2024-05-17 22:07:47 (21832): Guest Log: 2024-05-18 02:07:23,968 | INFO     | end of generic workflow (traces error code: 0)
2024-05-17 22:07:47 (21832): Guest Log: 2024-05-18 02:07:23,969 | INFO     | traces error code: 0
2024-05-17 22:07:47 (21832): Guest Log: 2024-05-18 02:07:23,969 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-05-17 22:07:47 (21832): Guest Log: 2024-05-18 02:07:24,012 [wrapper] ==== pilot stdout END ====
2024-05-17 22:07:47 (21832): Guest Log: 2024-05-18 02:07:24,015 [wrapper] ==== wrapper stdout RESUME ====
2024-05-17 22:07:47 (21832): Guest Log: 2024-05-18 02:07:24,017 [wrapper] pilotpid: 6518
2024-05-17 22:07:47 (21832): Guest Log: 2024-05-18 02:07:24,019 [wrapper] Pilot exit status: 0
2024-05-17 22:07:47 (21832): Guest Log: 2024-05-18 02:07:26,300 [wrapper] pandaids: 6208327646
2024-05-17 22:07:47 (21832): Guest Log: 2024-05-18 02:07:26,321 [wrapper] cleanup: SIGTERM to supervisor_pilot  3272 6519
2024-05-17 22:07:47 (21832): Guest Log: 2024-05-18 02:07:26,324 [wrapper] Test setup, not cleaning
2024-05-17 22:07:47 (21832): Guest Log: 2024-05-18 02:07:26,327 [wrapper] ==== wrapper stdout END ====
2024-05-17 22:07:47 (21832): Guest Log: 2024-05-18 02:07:26,330 [wrapper] ==== wrapper stderr END ====
2024-05-17 22:07:47 (21832): Guest Log: 2024-05-18 02:07:26,336 [wrapper] apfmon messages muted
2024-05-17 22:07:47 (21832): Guest Log:  *** Error codes and diagnostics ***
2024-05-17 22:07:47 (21832): Guest Log:     "exeErrorCode": 0,
2024-05-17 22:07:47 (21832): Guest Log:     "exeErrorDiag": "",
2024-05-17 22:07:47 (21832): Guest Log:     "pilotErrorCode": 0,
2024-05-17 22:07:47 (21832): Guest Log:     "pilotErrorDiag": "",
2024-05-17 22:07:47 (21832): Guest Log:  *** Listing of results directory ***
2024-05-17 22:07:47 (21832): Guest Log: total 222924
2024-05-17 22:07:47 (21832): Guest Log: -rwx------. 1 atlas atlas     32251 May 17 19:53 runpilot2-wrapper.sh
2024-05-17 22:07:47 (21832): Guest Log: -rw-r--r--. 1 atlas atlas      5633 May 17 19:53 queuedata.json
2024-05-17 22:07:47 (21832): Guest Log: -rw-r--r--. 1 atlas atlas    467845 May 17 19:53 pilot3.tar.gz
2024-05-17 22:07:47 (21832): Guest Log: -rwxr-xr-x. 1 atlas atlas     12176 May 18 00:27 init_data.xml
2024-05-17 22:07:47 (21832): Guest Log: -rwxr-xr-x. 1 atlas atlas    479956 May 18 00:27 input.tar.gz
2024-05-17 22:07:47 (21832): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 May 18 00:27 start_atlas.sh
2024-05-17 22:07:47 (21832): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 18 00:27 EVNT.38744251._000001.pool.root.1 -> /data/./ATLAS.root_0
2024-05-17 22:07:47 (21832): Guest Log: -rw-r--r--. 1 atlas atlas      2511 May 18 00:27 pandaJob.out
2024-05-17 22:07:47 (21832): Guest Log: -rw-------. 1 atlas atlas       424 May 18 00:28 setup.sh.local
2024-05-17 22:07:47 (21832): Guest Log: -rw-------. 1 atlas atlas   1019073 May 18 00:31 agis_schedconf.cvmfs.json
2024-05-17 22:07:47 (21832): Guest Log: -rw-------. 1 atlas atlas         0 May 18 00:31 agis_ddmendpoints.agis.ALL.json
2024-05-17 22:07:47 (21832): Guest Log: -rw-------. 1 atlas atlas   1324701 May 18 00:31 cric_ddmendpoints.json
2024-05-17 22:07:47 (21832): Guest Log: drwx------. 4 atlas atlas      4096 May 18 00:31 pilot3
2024-05-17 22:07:47 (21832): Guest Log: -rw-------. 1 atlas atlas 223490909 May 18 02:06 HITS.38744253._000747.pool.root.1
2024-05-17 22:07:47 (21832): Guest Log: -rw-------. 1 atlas atlas      1029 May 18 02:06 memory_monitor_summary.json
2024-05-17 22:07:47 (21832): Guest Log: -rw-------. 1 atlas atlas    250123 May 18 02:06 log.38744253._000747.job.log.tgz.1
2024-05-17 22:07:47 (21832): Guest Log: -rw-------. 1 atlas atlas      7718 May 18 02:07 heartbeat.json
2024-05-17 22:07:47 (21832): Guest Log: -rw-------. 1 atlas atlas        95 May 18 02:07 pilot_heartbeat.json
2024-05-17 22:07:47 (21832): Guest Log: -rw-------. 1 atlas atlas      4466 May 18 02:07 pilotlog.txt
2024-05-17 22:07:47 (21832): Guest Log: -rw-------. 1 atlas atlas    411453 May 18 02:07 log.38744253._000747.job.log.1
2024-05-17 22:07:47 (21832): Guest Log: -rw-------. 1 atlas atlas       357 May 18 02:07 output.list
2024-05-17 22:07:47 (21832): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 18 02:07 runtime_log
2024-05-17 22:07:47 (21832): Guest Log: -rw-------. 1 atlas atlas    675840 May 18 02:07 result.tar.gz
2024-05-17 22:07:47 (21832): Guest Log: -rw-r--r--. 1 atlas atlas     10933 May 18 02:07 runtime_log.err
2024-05-17 22:07:47 (21832): Guest Log: -rw-------. 1 atlas atlas       644 May 18 02:07 q36LDmmoIS5nsSi4apGgGQJmABFKDmABFKDm4ySLDmvURKDmjbbTGn.diag
2024-05-17 22:07:47 (21832): Guest Log: Looking for outputfile HITS.38744253._000747.pool.root.1
2024-05-17 22:07:47 (21832): Guest Log: HITS file was successfully produced
2024-05-17 22:07:47 (21832): Guest Log: -rw-------. 1 atlas atlas 223490909 May 18 02:06 /home/atlas/RunAtlas/HITS.38744253._000747.pool.root.1
2024-05-17 22:07:47 (21832): Guest Log: Successfully finished the ATLAS job!
2024-05-17 22:07:47 (21832): Guest Log: Copying the results back to the shared directory!
2024-05-17 22:07:47 (21832): Guest Log:  *** Contents of shared directory: ***
2024-05-17 22:07:47 (21832): Guest Log: total 797548
2024-05-17 22:07:47 (21832): Guest Log: -rwxrwxrwx. 1 root root 592001961 May 18 00:26 ATLAS.root_0
2024-05-17 22:07:47 (21832): Guest Log: -rwxrwxrwx. 1 root root 223490909 May 18  2024 HITS.pool.root.1
2024-05-17 22:07:47 (21832): Guest Log: -rwxrwxrwx. 1 root root     12176 May 18 00:26 init_data.xml
2024-05-17 22:07:47 (21832): Guest Log: -rwxrwxrwx. 1 root root    479956 May 17 23:51 input.tar.gz
2024-05-17 22:07:47 (21832): Guest Log: -rwxrwxrwx. 1 root root    675840 May 18  2024 result.tar.gz
2024-05-17 22:07:47 (21832): Guest Log: -rwxrwxrwx. 1 root root     17537 May 17 23:51 start_atlas.sh
2024-05-17 22:07:47 (21832): Guest Log:  *** Success! Shutting down the machine. ***
2024-05-17 22:07:47 (21832): VM Completion File Detected.
2024-05-17 22:07:47 (21832): Powering off VM.
2024-05-17 22:07:47 (21832): Successfully stopped VM.
2024-05-17 22:07:47 (21832): Deregistering VM. (boinc_1b2ff7cc35bd9ed6, slot#5)
2024-05-17 22:07:47 (21832): Removing network bandwidth throttle group from VM.
2024-05-17 22:07:48 (21832): Removing VM from VirtualBox.
22:07:53 (21832): called boinc_finish(0)

</stderr_txt>
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