Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:43:04 (2639589): wrapper (7.7.26015): starting
03:43:04 (2639589): wrapper: running run_atlas (--nthreads 4)
[2024-05-20 03:43:04] Arguments: --nthreads 4
[2024-05-20 03:43:04] Threads: 4
[2024-05-20 03:43:04] Checking for CVMFS
[2024-05-20 03:43:04] No cvmfs_config command found, will try listing directly
[2024-05-20 03:43:04] CVMFS is ok
[2024-05-20 03:43:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-20 03:43:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-20 03:43:04] Further information can be found at the LHC@home message board.
[2024-05-20 03:43:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-20 03:43:04] Checking for apptainer binary...
[2024-05-20 03:43:04] which: no apptainer in ((null))
[2024-05-20 03:43:04] apptainer is not installed, using version from CVMFS
[2024-05-20 03:43:04] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-20 03:43:06] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot64/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut06.grid.cesnet.cz
[2024-05-20 03:43:06] apptainer works
[2024-05-20 03:43:06] Set ATHENA_PROC_NUMBER=4
[2024-05-20 03:43:06] Set ATHENA_CORE_NUMBER=4
[2024-05-20 03:43:06] Starting ATLAS job with PandaID=6208280656
[2024-05-20 03:43:06] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot64/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-20 06:36:58]  *** The last 200 lines of the pilot log: ***
[2024-05-20 06:36:58] 2024-05-20 04:36:35,343 | INFO     | model: linear, x: [1716170029.0, 1716170090.0, 1716170151.0, 1716170212.0, 1716170273.0, 1716170334.0, 1716170395.0, 1716170456.0, 1716170517.0, 1716170578.0, 1716
[2024-05-20 06:36:58] 2024-05-20 04:36:35,343 | INFO     | sum of square deviations: 1270051720.0
[2024-05-20 06:36:58] 2024-05-20 04:36:35,344 | INFO     | sum of deviations: 3499309499.499999
[2024-05-20 06:36:58] 2024-05-20 04:36:35,344 | INFO     | mean x: 1716174878.5
[2024-05-20 06:36:58] 2024-05-20 04:36:35,344 | INFO     | mean y: 2338892.63125
[2024-05-20 06:36:58] 2024-05-20 04:36:35,344 | INFO     | -- intersect: -4726151262.980922
[2024-05-20 06:36:58] 2024-05-20 04:36:35,344 | INFO     | intersect: -4726151262.980922
[2024-05-20 06:36:58] 2024-05-20 04:36:35,344 | INFO     | chi2: 0.051404172351971616
[2024-05-20 06:36:58] 2024-05-20 04:36:35,344 | INFO     | current chi2=0.051404172351971616 (change=95.91100085913257 %)
[2024-05-20 06:36:58] 2024-05-20 04:36:35,344 | INFO     | model: linear, x: [1716170334.0, 1716170395.0, 1716170456.0, 1716170517.0, 1716170578.0, 1716170639.0, 1716170700.0, 1716170761.0, 1716170822.0, 1716170883.0, 1716
[2024-05-20 06:36:58] 2024-05-20 04:36:35,345 | INFO     | sum of square deviations: 1154663510.0
[2024-05-20 06:36:58] 2024-05-20 04:36:35,345 | INFO     | sum of deviations: 680912926.9999994
[2024-05-20 06:36:58] 2024-05-20 04:36:35,345 | INFO     | mean x: 1716175031.0
[2024-05-20 06:36:58] 2024-05-20 04:36:35,345 | INFO     | mean y: 2342528.7225806452
[2024-05-20 06:36:58] 2024-05-20 04:36:35,345 | INFO     | -- intersect: -1009697562.1628796
[2024-05-20 06:36:58] 2024-05-20 04:36:35,345 | INFO     | intersect: -1009697562.1628796
[2024-05-20 06:36:58] 2024-05-20 04:36:35,345 | INFO     | chi2: 0.009436371867065493
[2024-05-20 06:36:58] 2024-05-20 04:36:35,345 | INFO     | current chi2=0.009436371867065493 (change=81.64279000067674 %)
[2024-05-20 06:36:58] 2024-05-20 04:36:35,346 | INFO     | model: linear, x: [1716170639.0, 1716170700.0, 1716170761.0, 1716170822.0, 1716170883.0, 1716170944.0, 1716171005.0, 1716171066.0, 1716171127.0, 1716171188.0, 1716
[2024-05-20 06:36:58] 2024-05-20 04:36:35,346 | INFO     | sum of square deviations: 1046484737.5
[2024-05-20 06:36:58] 2024-05-20 04:36:35,346 | INFO     | sum of deviations: 2010669739.0000002
[2024-05-20 06:36:58] 2024-05-20 04:36:35,346 | INFO     | mean x: 1716175183.5
[2024-05-20 06:36:58] 2024-05-20 04:36:35,346 | INFO     | mean y: 2340650.28
[2024-05-20 06:36:58] 2024-05-20 04:36:35,346 | INFO     | -- intersect: -3295042851.48963
[2024-05-20 06:36:58] 2024-05-20 04:36:35,346 | INFO     | intersect: -3295042851.48963
[2024-05-20 06:36:58] 2024-05-20 04:36:35,346 | INFO     | chi2: 0.005817237629005357
[2024-05-20 06:36:58] 2024-05-20 04:36:35,346 | INFO     | current chi2=0.005817237629005357 (change=38.3530268735118 %)
[2024-05-20 06:36:58] 2024-05-20 04:36:35,347 | INFO     | model: linear, x: [1716170944.0, 1716171005.0, 1716171066.0, 1716171127.0, 1716171188.0, 1716171249.0, 1716171310.0, 1716171371.0, 1716171432.0, 1716171493.0, 1716
[2024-05-20 06:36:58] 2024-05-20 04:36:35,347 | INFO     | sum of square deviations: 945282840.0
[2024-05-20 06:36:58] 2024-05-20 04:36:35,347 | INFO     | sum of deviations: 3265462614.0
[2024-05-20 06:36:58] 2024-05-20 04:36:35,347 | INFO     | mean x: 1716175336.0
[2024-05-20 06:36:58] 2024-05-20 04:36:35,347 | INFO     | mean y: 2338776.9310344825
[2024-05-20 06:36:58] 2024-05-20 04:36:35,347 | INFO     | -- intersect: -5926158135.989641
[2024-05-20 06:36:58] 2024-05-20 04:36:35,347 | INFO     | intersect: -5926158135.989641
[2024-05-20 06:36:58] 2024-05-20 04:36:35,347 | INFO     | chi2: 0.00024734102901919876
[2024-05-20 06:36:58] 2024-05-20 04:36:35,348 | INFO     | current chi2=0.00024734102901919876 (change=95.74813606056026 %)
[2024-05-20 06:36:58] 2024-05-20 04:36:35,348 | INFO     | model: linear, x: [1716171249.0, 1716171310.0, 1716171371.0, 1716171432.0, 1716171493.0, 1716171554.0, 1716171615.0, 1716171676.0, 1716171737.0, 1716171798.0, 1716
[2024-05-20 06:36:58] 2024-05-20 04:36:35,348 | INFO     | sum of square deviations: 850825255.0
[2024-05-20 06:36:58] 2024-05-20 04:36:35,348 | INFO     | sum of deviations: 2786779692.9999995
[2024-05-20 06:36:58] 2024-05-20 04:36:35,348 | INFO     | mean x: 1716175488.5
[2024-05-20 06:36:58] 2024-05-20 04:36:35,348 | INFO     | mean y: 2339549.657142857
[2024-05-20 06:36:58] 2024-05-20 04:36:35,348 | INFO     | -- intersect: -5618794723.062764
[2024-05-20 06:36:58] 2024-05-20 04:36:35,348 | INFO     | intersect: -5618794723.062764
[2024-05-20 06:36:58] 2024-05-20 04:36:35,348 | INFO     | chi2: 0.00019709116221053595
[2024-05-20 06:36:58] 2024-05-20 04:36:35,349 | INFO     | current chi2=0.00019709116221053595 (change=20.31602561367301 %)
[2024-05-20 06:36:58] 2024-05-20 04:36:35,349 | INFO     | left removable region: 60
[2024-05-20 06:36:58] 2024-05-20 04:36:35,349 | INFO     | model: linear, x: [1716173079.0, 1716173140.0, 1716173201.0, 1716173262.0, 1716173323.0, 1716173384.0, 1716173445.0, 1716173506.0, 1716173567.0, 1716173628.0, 1716
[2024-05-20 06:36:58] 2024-05-20 04:36:35,349 | INFO     | sum of square deviations: 348769330.0
[2024-05-20 06:36:58] 2024-05-20 04:36:35,349 | INFO     | sum of deviations: 993496447.0
[2024-05-20 06:36:58] 2024-05-20 04:36:35,349 | INFO     | mean x: 1716176220.5
[2024-05-20 06:36:58] 2024-05-20 04:36:35,349 | INFO     | mean y: 2342834.153846154
[2024-05-20 06:36:58] 2024-05-20 04:36:35,349 | INFO     | -- intersect: -4886318039.474689
[2024-05-20 06:36:58] 2024-05-20 04:36:35,349 | INFO     | intersect: -4886318039.474689
[2024-05-20 06:36:58] 2024-05-20 04:36:35,349 | INFO     | chi2: 0.00011220683286653498
[2024-05-20 06:36:58] 2024-05-20 04:36:35,349 | INFO     | -- intersect: -4886318039.474689
[2024-05-20 06:36:58] 2024-05-20 04:36:35,349 | INFO     | current memory leak: 2.85 B/s (using 104 data points, chi2=0.00)
[2024-05-20 06:36:58] 2024-05-20 04:36:35,350 | INFO     | ..............................
[2024-05-20 06:36:58] 2024-05-20 04:36:35,350 | INFO     | . Timing measurements:
[2024-05-20 06:36:58] 2024-05-20 04:36:35,350 | INFO     | . get job = 0 s
[2024-05-20 06:36:58] 2024-05-20 04:36:35,350 | INFO     | . initial setup = 1 s
[2024-05-20 06:36:58] 2024-05-20 04:36:35,350 | INFO     | . payload setup = 5 s
[2024-05-20 06:36:58] 2024-05-20 04:36:35,350 | INFO     | . stage-in = 0 s
[2024-05-20 06:36:58] 2024-05-20 04:36:35,350 | INFO     | . payload execution = 10369 s
[2024-05-20 06:36:58] 2024-05-20 04:36:35,350 | INFO     | . stage-out = 0 s
[2024-05-20 06:36:58] 2024-05-20 04:36:35,350 | INFO     | . log creation = 0 s
[2024-05-20 06:36:58] 2024-05-20 04:36:35,350 | INFO     | ..............................
[2024-05-20 06:36:58] 2024-05-20 04:36:35,475 | WARNING  | process 2651458 is no longer using CPU - aborting
[2024-05-20 06:36:58] 2024-05-20 04:36:35,475 | INFO     | aborting job monitoring since job object (job id=6208280656) has expired
[2024-05-20 06:36:58] 2024-05-20 04:36:35,643 | INFO     | 
[2024-05-20 06:36:58] 2024-05-20 04:36:35,643 | INFO     | job summary report
[2024-05-20 06:36:58] 2024-05-20 04:36:35,643 | INFO     | --------------------------------------------------
[2024-05-20 06:36:58] 2024-05-20 04:36:35,643 | INFO     | PanDA job id: 6208280656
[2024-05-20 06:36:58] 2024-05-20 04:36:35,643 | INFO     | task id: 38776104
[2024-05-20 06:36:58] 2024-05-20 04:36:35,643 | INFO     | errors: (none)
[2024-05-20 06:36:58] 2024-05-20 04:36:35,643 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-20 06:36:58] 2024-05-20 04:36:35,643 | INFO     | pilot state: finished 
[2024-05-20 06:36:58] 2024-05-20 04:36:35,643 | INFO     | transexitcode: 0
[2024-05-20 06:36:58] 2024-05-20 04:36:35,643 | INFO     | exeerrorcode: 0
[2024-05-20 06:36:58] 2024-05-20 04:36:35,644 | INFO     | exeerrordiag: 
[2024-05-20 06:36:58] 2024-05-20 04:36:35,644 | INFO     | exitcode: 0
[2024-05-20 06:36:58] 2024-05-20 04:36:35,644 | INFO     | exitmsg: OK
[2024-05-20 06:36:58] 2024-05-20 04:36:35,644 | INFO     | cpuconsumptiontime: 38685 s
[2024-05-20 06:36:58] 2024-05-20 04:36:35,644 | INFO     | nevents: 400
[2024-05-20 06:36:58] 2024-05-20 04:36:35,644 | INFO     | neventsw: 0
[2024-05-20 06:36:58] 2024-05-20 04:36:35,644 | INFO     | pid: 2651458
[2024-05-20 06:36:58] 2024-05-20 04:36:35,644 | INFO     | pgrp: 2651458
[2024-05-20 06:36:58] 2024-05-20 04:36:35,644 | INFO     | corecount: 4
[2024-05-20 06:36:58] 2024-05-20 04:36:35,644 | INFO     | event service: False
[2024-05-20 06:36:58] 2024-05-20 04:36:35,644 | INFO     | sizes: {0: 2392264, 4: 2392470, 11: 2392498, 10378: 2421410, 10379: 2430392, 10382: 2430448, 10386: 2430746}
[2024-05-20 06:36:58] 2024-05-20 04:36:35,644 | INFO     | --------------------------------------------------
[2024-05-20 06:36:58] 2024-05-20 04:36:35,644 | INFO     | 
[2024-05-20 06:36:58] 2024-05-20 04:36:35,645 | INFO     | executing command: ls -lF /scratch/boinc/var/slot64/slots/0
[2024-05-20 06:36:58] 2024-05-20 04:36:35,663 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-20 06:36:58] 2024-05-20 04:36:35,663 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-20 06:36:58] 2024-05-20 04:36:35,663 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-20 06:36:58] 2024-05-20 04:36:35,663 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-20 06:36:58] 2024-05-20 04:36:35,663 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-20 06:36:58] 2024-05-20 04:36:35,663 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-20 06:36:58] 2024-05-20 04:36:35,663 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-20 06:36:58] 2024-05-20 04:36:35,663 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-20 06:36:58] 2024-05-20 04:36:35,663 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-20 06:36:58] 2024-05-20 04:36:35,663 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-20 06:36:58] 2024-05-20 04:36:35,663 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-20 06:36:58] 2024-05-20 04:36:35,663 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-20 06:36:58] 2024-05-20 04:36:35,663 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-20 06:36:58] 2024-05-20 04:36:35,663 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-20 06:36:58] 2024-05-20 04:36:35,663 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-20 06:36:58] 2024-05-20 04:36:35,664 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-20 06:36:58] 2024-05-20 04:36:35,664 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-20 06:36:58] 2024-05-20 04:36:35,664 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-20 06:36:58] 2024-05-20 04:36:35,664 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-20 06:36:58] 2024-05-20 04:36:35,664 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-20 06:36:58] 2024-05-20 04:36:35,664 | INFO     | job 6208280656 has completed (purged errors)
[2024-05-20 06:36:58] 2024-05-20 04:36:35,664 | INFO     | overall cleanup function is called
[2024-05-20 06:36:58] 2024-05-20 04:36:36,671 | INFO     | --- collectZombieJob: --- 10, [2651458]
[2024-05-20 06:36:58] 2024-05-20 04:36:36,671 | INFO     | zombie collector waiting for pid 2651458
[2024-05-20 06:36:58] 2024-05-20 04:36:36,671 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-20 06:36:58] 2024-05-20 04:36:37,676 | INFO     | collected zombie processes
[2024-05-20 06:36:58] 2024-05-20 04:36:37,676 | INFO     | will now attempt to kill all subprocesses of pid=2651458
[2024-05-20 06:36:58] 2024-05-20 04:36:37,829 | INFO     | process IDs to be killed: [2651458] (in reverse order)
[2024-05-20 06:36:58] 2024-05-20 04:36:37,931 | WARNING  | found no corresponding commands to process id(s)
[2024-05-20 06:36:58] 2024-05-20 04:36:37,932 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-20 06:36:58] 2024-05-20 04:36:37,939 | INFO     | did not find any defunct processes belonging to 2651458
[2024-05-20 06:36:58] 2024-05-20 04:36:37,945 | INFO     | did not find any defunct processes belonging to 2651458
[2024-05-20 06:36:58] 2024-05-20 04:36:37,945 | INFO     | ready for new job
[2024-05-20 06:36:58] 2024-05-20 04:36:37,945 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-20 06:36:58] 2024-05-20 04:36:37,946 | INFO     | *************************************
[2024-05-20 06:36:58] 2024-05-20 04:36:37,947 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-20 06:36:58] 2024-05-20 04:36:37,947 | INFO     | *************************************
[2024-05-20 06:36:58] 2024-05-20 04:36:37,947 | INFO     | 
[2024-05-20 06:36:58] 2024-05-20 04:36:37,949 | INFO     | architecture information:
[2024-05-20 06:36:58] 2024-05-20 04:36:37,950 | INFO     | executing command: cat /etc/os-release
[2024-05-20 06:36:58] 2024-05-20 04:36:37,963 | INFO     | cat /etc/os-release:
[2024-05-20 06:36:58] NAME="CentOS Linux"
[2024-05-20 06:36:58] VERSION="7 (Core)"
[2024-05-20 06:36:58] ID="centos"
[2024-05-20 06:36:58] ID_LIKE="rhel fedora"
[2024-05-20 06:36:58] VERSION_ID="7"
[2024-05-20 06:36:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-20 06:36:58] ANSI_COLOR="0;31"
[2024-05-20 06:36:58] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-20 06:36:58] HOME_URL="https://www.centos.org/"
[2024-05-20 06:36:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-20 06:36:58] 
[2024-05-20 06:36:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-20 06:36:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-20 06:36:58] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-20 06:36:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-20 06:36:58] 
[2024-05-20 06:36:58] 2024-05-20 04:36:37,963 | INFO     | *************************************
[2024-05-20 06:36:58] 2024-05-20 04:36:38,466 | INFO     | executing command: df -mP /scratch/boinc/var/slot64/slots/0
[2024-05-20 06:36:58] 2024-05-20 04:36:38,487 | INFO     | sufficient remaining disk space (593492967424 B)
[2024-05-20 06:36:58] 2024-05-20 04:36:38,487 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-20 06:36:58] 2024-05-20 04:36:38,487 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-20 06:36:58] 2024-05-20 04:36:38,487 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-20 06:36:58] 2024-05-20 04:36:38,488 | INFO     | found 0 job(s) in 20 queues
[2024-05-20 06:36:58] 2024-05-20 04:36:38,488 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-20 06:36:58] 2024-05-20 04:36:38,488 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-20 06:36:58] 2024-05-20 04:36:38,571 | INFO     | all data control threads have been joined
[2024-05-20 06:36:58] 2024-05-20 04:36:38,859 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-20 06:36:58] 2024-05-20 04:36:38,983 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-20 06:36:58] 2024-05-20 04:36:38,983 | INFO     | aborting loop
[2024-05-20 06:36:58] 2024-05-20 04:36:39,492 | INFO     | [job] retrieve thread has finished
[2024-05-20 06:36:58] 2024-05-20 04:36:39,506 | INFO     | all job control threads have been joined
[2024-05-20 06:36:58] 2024-05-20 04:36:39,576 | INFO     | [data] control thread has finished
[2024-05-20 06:36:58] 2024-05-20 04:36:39,691 | INFO     | all payload control threads have been joined
[2024-05-20 06:36:58] 2024-05-20 04:36:39,746 | INFO     | [payload] validate_post thread has finished
[2024-05-20 06:36:58] 2024-05-20 04:36:39,784 | INFO     | [job] validate thread has finished
[2024-05-20 06:36:58] 2024-05-20 04:36:39,864 | INFO     | [job] create_data_payload thread has finished
[2024-05-20 06:36:58] 2024-05-20 04:36:39,922 | INFO     | [payload] validate_pre thread has finished
[2024-05-20 06:36:58] 2024-05-20 04:36:39,985 | INFO     | [job] job monitor thread has finished
[2024-05-20 06:36:58] 2024-05-20 04:36:40,414 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-20 06:36:58] 2024-05-20 04:36:40,489 | INFO     | [data] copytool_in thread has finished
[2024-05-20 06:36:58] 2024-05-20 04:36:40,512 | INFO     | [job] control thread has finished
[2024-05-20 06:36:58] 2024-05-20 04:36:40,528 | INFO     | [payload] execute_payloads thread has finished
[2024-05-20 06:36:58] 2024-05-20 04:36:40,696 | INFO     | [payload] control thread has finished
[2024-05-20 06:36:58] 2024-05-20 04:36:40,812 | INFO     | [payload] failed_post thread has finished
[2024-05-20 06:36:58] 2024-05-20 04:36:40,862 | INFO     | [data] copytool_out thread has finished
[2024-05-20 06:36:58] 2024-05-20 04:36:41,420 | INFO     | [job] queue monitor thread has finished
[2024-05-20 06:36:58] 2024-05-20 04:36:41,495 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-20 06:36:58] 2024-05-20 04:36:45,500 | INFO     | [data] queue_monitor thread has finished
[2024-05-20 06:36:58] 2024-05-20 04:36:49,469 | INFO     | job.realtimelogging is not enabled
[2024-05-20 06:36:58] 2024-05-20 04:36:50,474 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-20 06:36:58] 2024-05-20 04:36:52,197 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47202105398336)>', '<ExcThread(monitor, started 47202280851200)>']
[2024-05-20 06:36:58] 2024-05-20 04:36:52,554 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-20 06:36:58] 2024-05-20 04:36:52,554 | INFO     | [monitor] control thread has ended
[2024-05-20 06:36:58] 2024-05-20 04:36:57,222 | INFO     | all workflow threads have been joined
[2024-05-20 06:36:58] 2024-05-20 04:36:57,222 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-20 06:36:58] 2024-05-20 04:36:57,222 | INFO     | traces error code: 0
[2024-05-20 06:36:58] 2024-05-20 04:36:57,222 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-20 06:36:58] 2024-05-20 04:36:57,293 [wrapper] ==== pilot stdout END ====
[2024-05-20 06:36:58] 2024-05-20 04:36:57,297 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-20 06:36:58] 2024-05-20 04:36:57,300 [wrapper] pilotpid: 2644105
[2024-05-20 06:36:58] 2024-05-20 04:36:57,302 [wrapper] Pilot exit status: 0
[2024-05-20 06:36:58] 2024-05-20 04:36:57,309 [wrapper] pandaids: 6208280656
[2024-05-20 06:36:58] 2024-05-20 04:36:57,408 [wrapper] cleanup: SIGTERM to supervisor_pilot 3093983 2644106
[2024-05-20 06:36:58] 2024-05-20 04:36:57,410 [wrapper] Test setup, not cleaning
[2024-05-20 06:36:58] 2024-05-20 04:36:57,412 [wrapper] ==== wrapper stdout END ====
[2024-05-20 06:36:58] 2024-05-20 04:36:57,414 [wrapper] ==== wrapper stderr END ====
[2024-05-20 06:36:58] 2024-05-20 04:36:57,418 [wrapper] apfmon messages muted
[2024-05-20 06:36:58]  *** Error codes and diagnostics ***
[2024-05-20 06:36:58]     "exeErrorCode": 0,
[2024-05-20 06:36:58]     "exeErrorDiag": "",
[2024-05-20 06:36:58]     "pilotErrorCode": 0,
[2024-05-20 06:36:58]     "pilotErrorDiag": "",
[2024-05-20 06:36:58]  *** Listing of results directory ***
[2024-05-20 06:36:58] total 820212
[2024-05-20 06:36:58] -rw-r--r-- 1 boinc boinc      5633 May 17 20:32 queuedata.json
[2024-05-20 06:36:58] -rwx------ 1 boinc boinc     32251 May 17 20:35 runpilot2-wrapper.sh
[2024-05-20 06:36:58] -rw-r--r-- 1 boinc boinc    467845 May 17 20:35 pilot3.tar.gz
[2024-05-20 06:36:58] -rw-r--r-- 1 boinc boinc       100 May 20 03:42 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-20 06:36:58] -rwxr-xr-x 1 boinc boinc      7986 May 20 03:42 run_atlas
[2024-05-20 06:36:58] -rw-r--r-- 1 boinc boinc       105 May 20 03:42 job.xml
[2024-05-20 06:36:58] -rw-r--r-- 1 boinc boinc      6663 May 20 03:43 init_data.xml
[2024-05-20 06:36:58] -rw-r--r-- 2 boinc boinc 604371066 May 20 03:43 EVNT.38776100._000201.pool.root.1
[2024-05-20 06:36:58] -rw-r--r-- 2 boinc boinc     17537 May 20 03:43 start_atlas.sh
[2024-05-20 06:36:58] drwxrwx--x 2 boinc boinc      4096 May 20 03:43 shared
[2024-05-20 06:36:58] -rw-r--r-- 2 boinc boinc    480008 May 20 03:43 input.tar.gz
[2024-05-20 06:36:58] -rw-r--r-- 1 boinc boinc         0 May 20 03:43 boinc_lockfile
[2024-05-20 06:36:58] -rw-r--r-- 1 boinc boinc      2642 May 20 03:43 pandaJob.out
[2024-05-20 06:36:58] -rw------- 1 boinc boinc       424 May 20 03:43 setup.sh.local
[2024-05-20 06:36:58] -rw------- 1 boinc boinc   1013669 May 20 03:43 agis_schedconf.cvmfs.json
[2024-05-20 06:36:58] -rw------- 1 boinc boinc         0 May 20 03:43 agis_ddmendpoints.agis.ALL.json
[2024-05-20 06:36:58] -rw------- 1 boinc boinc   1324701 May 20 03:43 cric_ddmendpoints.json
[2024-05-20 06:36:58] drwx------ 4 boinc boinc      4096 May 20 03:43 pilot3
[2024-05-20 06:36:58] -rw------- 1 boinc boinc        95 May 20 06:35 pilot_heartbeat.json
[2024-05-20 06:36:58] -rw------- 1 boinc boinc 229145812 May 20 06:35 HITS.38776104._013975.pool.root.1
[2024-05-20 06:36:58] -rw-r--r-- 1 boinc boinc       531 May 20 06:36 boinc_task_state.xml
[2024-05-20 06:36:58] -rw------- 1 boinc boinc      1049 May 20 06:36 memory_monitor_summary.json
[2024-05-20 06:36:58] -rw------- 1 boinc boinc    320680 May 20 06:36 log.38776104._013975.job.log.tgz.1
[2024-05-20 06:36:58] -rw------- 1 boinc boinc      7760 May 20 06:36 heartbeat.json
[2024-05-20 06:36:58] -rw-r--r-- 1 boinc boinc      8192 May 20 06:36 boinc_mmap_file
[2024-05-20 06:36:58] -rw-r--r-- 1 boinc boinc        28 May 20 06:36 wrapper_checkpoint.txt
[2024-05-20 06:36:58] -rw------- 1 boinc boinc      4416 May 20 06:36 pilotlog.txt
[2024-05-20 06:36:58] -rw------- 1 boinc boinc   1105875 May 20 06:36 log.38776104._013975.job.log.1
[2024-05-20 06:36:58] -rw------- 1 boinc boinc       357 May 20 06:36 output.list
[2024-05-20 06:36:58] -rw-r--r-- 1 boinc boinc       620 May 20 06:36 runtime_log
[2024-05-20 06:36:58] -rw------- 1 boinc boinc   1443840 May 20 06:36 result.tar.gz
[2024-05-20 06:36:58] -rw------- 1 boinc boinc       657 May 20 06:36 wZeNDmwbHS5n7Olcko1bjSoqABFKDmABFKDmOtvXDmUsZKDm5aQrOm.diag
[2024-05-20 06:36:58] -rw-r--r-- 1 boinc boinc     11410 May 20 06:36 runtime_log.err
[2024-05-20 06:36:58] -rw-r--r-- 1 boinc boinc     21426 May 20 06:36 stderr.txt
[2024-05-20 06:36:58] HITS file was successfully produced:
[2024-05-20 06:36:58] -rw------- 1 boinc boinc 229145812 May 20 06:35 shared/HITS.pool.root.1
[2024-05-20 06:36:58]  *** Contents of shared directory: ***
[2024-05-20 06:36:58] total 815896
[2024-05-20 06:36:58] -rw-r--r-- 2 boinc boinc 604371066 May 20 03:43 ATLAS.root_0
[2024-05-20 06:36:58] -rw-r--r-- 2 boinc boinc     17537 May 20 03:43 start_atlas.sh
[2024-05-20 06:36:58] -rw-r--r-- 2 boinc boinc    480008 May 20 03:43 input.tar.gz
[2024-05-20 06:36:58] -rw------- 1 boinc boinc 229145812 May 20 06:35 HITS.pool.root.1
[2024-05-20 06:36:58] -rw------- 1 boinc boinc   1443840 May 20 06:36 result.tar.gz
06:36:59 (2639589): run_atlas exited; CPU time 38463.593700
06:36:59 (2639589): called boinc_finish(0)

</stderr_txt>
]]>

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